ZRdb KZFP & Repeats
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LINE_L1PA14_3END

  • Name
    L1PA14_3END
  • Repbase
    L1PA14
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000333
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagcatctataaggaacttaaacaaatttacaagagaaaaacaaacaaccccattaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatacatgcggccaacaagcatatgaaaaaaagctcaatatcactgatcattagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtcagaatggctattattaaaaagtcaaaaaataacagatgctggcgaggttgcggagaaaagggaacacttatacactgttggtgggagtgtaaattagttcaaccattgtggaaagcagtatggcgattcctcaaagagctaaaagcagaactaccattcgacccagcaatcccattactgggtatatacccagaggaatataaatcattctaccataaagacacatgcacgcgaatgttcattgcagcactattcacaatagcaaagacatggaatcaacctaaatgcccatcaatgacagattggataaagaaaatgtggtacatatacaccatggaatactatgcagccataaaaaagaacgagatcatgtcttttgcgggaacatggatggagctggaggctattatccttagcaaactaacgcaggaacagaaaaccaaataccgcatgttctcacttataagtgggagctaaatgatgagaacttatgaacacaaagaaggaaacaacagacactggggtctacttgagggnggagggtgggaggagggagaggagcagaaaagataactattgggtactgggcttaatacctgggtgatgaaataatctgtacaacaaacccccgtgacacgngtttacctatgtaacaaaccttcacatgtacccccgaacctaaaataaaagttaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 340 99.0 Weakly correlated
2 ZNF705B 247 28.9 Weakly correlated
3 ZNF486 244 8.6 Weakly correlated
4 ZNF705D 208 28.9 Weakly correlated
5 ZNF490 163 43.0 Weakly correlated
6 ZNF84 153 99.0 Weakly correlated
7 ZNF263 135 180.0 Weakly correlated
8 ZNF92 135 28.9 Weakly correlated
9 ZNF679 97 28.9 Weakly correlated
10 ZNF248 75 99.0 Weakly correlated
11 ZNF723 70 15.2 Weakly correlated
12 ZNF558 66 99.0 Weakly correlated
13 ZNF8 63 99.0 Weakly correlated
14 ZNF317 51 99.0 Weakly correlated
15 ZIM3 48 87.0 Weakly correlated
16 ZNF766 28 43.0 Weakly correlated
17 ZNF433 25 43.0 Weakly correlated
18 ZNF680 25 28.9 Weakly correlated
19 ZNF136 23 74.0 Highly correlated
20 ZNF440 23 28.9 Weakly correlated
21 ZNF793 22 99.0 Weakly correlated
22 ZNF485 18 94.0 Weakly correlated
23 ZFP90 16 99.0 Weakly correlated
24 ZNF394 15 99.0 Weakly correlated
25 ZNF2 14 99.0 Weakly correlated
26 ZNF10 13 99.0 Weakly correlated
27 ZNF274 13 99.0 Weakly correlated
28 ZNF534 13 19.6 Weakly correlated
29 ZNF547 13 74.0 Highly correlated
30 ZFP37 12 99.0 Weakly correlated
31 ZFP69B 12 99.0 Weakly correlated
32 ZNF133 11 99.0 Weakly correlated
33 ZNF786 11 99.0 Weakly correlated
34 ZNF324 10 99.0 Weakly correlated
35 ZNF479 10 6.4 Weakly correlated
36 ZNF506 10 28.9 Weakly correlated
37 ZNF101 9 43.0 Weakly correlated
38 ZNF251 9 94.0 Weakly correlated
39 ZNF429 8 28.9 Weakly correlated
40 ZNF554 8 99.0 Weakly correlated
41 ZNF18 6 160.0 Weakly correlated
42 ZNF257 6 0.0 Weakly correlated
43 ZNF287 6 99.0 Weakly correlated
44 ZNF28 6 28.9 Weakly correlated
45 ZNF337 6 43.0 Weakly correlated
46 ZNF528 6 43.0 Weakly correlated
47 ZNF75D 6 94.0 Weakly correlated
48 ZNF33A 5 99.0 Weakly correlated
49 ZNF597 5 94.0 Weakly correlated
50 ZNF677 5 99.0 Weakly correlated
51 ZNF182 4 99.0 Weakly correlated
52 ZNF441 4 43.0 Weakly correlated
53 ZNF471 4 94.0 Weakly correlated
54 ZNF519 4 19.6 Weakly correlated
55 ZNF585A 4 99.0 Weakly correlated
56 ZNF589 4 28.9 Weakly correlated
57 ZKSCAN8 3 160.0 Weakly correlated
58 ZNF175 3 94.0 Weakly correlated
59 ZNF202 3 160.0 Weakly correlated
60 ZNF250 3 99.0 Weakly correlated
61 ZNF320 3 28.9 Weakly correlated
62 ZNF585B 3 99.0 Weakly correlated
63 ZNF605 3 99.0 Weakly correlated
64 ZNF610 3 28.9 Weakly correlated
65 ZFP28 2 99.0 Weakly correlated
66 ZNF114 2 28.9 Weakly correlated
67 ZNF140 2 99.0 Weakly correlated
68 ZNF160 2 74.0 Highly correlated
69 ZNF230 2 28.9 Weakly correlated
70 ZNF234 2 99.0 Weakly correlated
71 ZNF26 2 99.0 Weakly correlated
72 ZNF286A 2 160.0 Weakly correlated
73 ZNF41 2 99.0 Weakly correlated
74 ZNF483 2 99.0 Weakly correlated
75 ZNF487 2 28.9 Weakly correlated
76 ZNF500 2 160.0 Weakly correlated
77 ZNF510 2 99.0 Weakly correlated
78 ZNF563 2 28.9 Weakly correlated
79 ZNF630 2 94.0 Weakly correlated
80 ZNF641 2 99.0 Weakly correlated
81 ZNF700 2 28.9 Weakly correlated
82 ZNF701 2 28.9 Weakly correlated
83 ZNF705E 2 0.0 Weakly correlated
84 ZNF707 2 74.0 Highly correlated
85 ZNF792 2 94.0 Weakly correlated
86 ZNF85 2 28.9 Weakly correlated
87 ZNF91 2 6.0 Weakly correlated
88 ZNF93 2 8.6 Weakly correlated
89 ZFP30 1 99.0 Weakly correlated
90 ZFP57 1 87.0 Weakly correlated
91 ZKSCAN1 1 160.0 Weakly correlated
92 ZNF141 1 43.0 Weakly correlated
93 ZNF154 1 94.0 Weakly correlated
94 ZNF177 1 94.0 Weakly correlated
95 ZNF189 1 99.0 Weakly correlated
96 ZNF197 1 99.0 Weakly correlated
97 ZNF253 1 19.6 Weakly correlated
98 ZNF264 1 99.0 Weakly correlated
99 ZNF331 1 94.0 Weakly correlated
100 ZNF354A 1 99.0 Weakly correlated
101 ZNF419 1 28.9 Weakly correlated
102 ZNF425 1 94.0 Weakly correlated
103 ZNF460 1 74.0 Highly correlated
104 ZNF480 1 43.0 Weakly correlated
105 ZNF530 1 28.9 Weakly correlated
106 ZNF544 1 0.0 Weakly correlated
107 ZNF560 1 43.0 Weakly correlated
108 ZNF569 1 99.0 Weakly correlated
109 ZNF584 1 99.0 Weakly correlated
110 ZNF626 1 0.0 Weakly correlated
111 ZNF649 1 28.9 Weakly correlated
112 ZNF658 1 99.0 Weakly correlated
113 ZNF665 1 28.9 Weakly correlated
114 ZNF667 1 99.0 Weakly correlated
115 ZNF66 1 0.0 Weakly correlated
116 ZNF671 1 94.0 Weakly correlated
117 ZNF681 1 28.9 Weakly correlated
118 ZNF695 1 28.9 Weakly correlated
119 ZNF735 1 28.9 Weakly correlated
120 ZNF736 1 43.0 Weakly correlated
121 ZNF747 1 43.0 Weakly correlated
122 ZNF772 1 94.0 Weakly correlated
123 ZNF778 1 74.0 Highly correlated
124 ZNF789 1 99.0 Weakly correlated
125 ZNF813 1 28.9 Weakly correlated
126 ZNF816 1 28.9 Weakly correlated
127 ZNF81 1 99.0 Weakly correlated
128 ZNF823 1 43.0 Weakly correlated
129 ZNF845 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 202 8.6 Weakly correlated
2 ZNF84 146 99.0 Weakly correlated
3 ZNF490 134 43.0 Weakly correlated
4 ZNF92 116 28.9 Weakly correlated
5 ZNF263 98 180.0 Weakly correlated
6 ZNF248 72 99.0 Weakly correlated
7 ZNF382 67 99.0 Weakly correlated
8 ZNF8 59 99.0 Weakly correlated
9 ZIM3 32 87.0 Weakly correlated
10 ZNF440 21 28.9 Weakly correlated
11 ZNF433 20 43.0 Weakly correlated
12 ZNF136 18 74.0 Highly correlated
13 ZNF723 18 15.2 Weakly correlated
14 ZNF485 17 94.0 Weakly correlated
15 ZNF558 15 99.0 Weakly correlated
16 ZNF793 14 99.0 Weakly correlated
17 ZFP90 14 99.0 Weakly correlated
18 ZNF317 12 99.0 Weakly correlated
19 ZNF10 11 99.0 Weakly correlated
20 ZNF680 11 28.9 Weakly correlated
21 ZNF679 10 28.9 Weakly correlated
22 ZNF705D 9 28.9 Weakly correlated
23 ZNF766 9 43.0 Weakly correlated
24 ZNF534 9 19.6 Weakly correlated
25 ZNF133 7 99.0 Weakly correlated
26 ZNF786 7 99.0 Weakly correlated
27 ZNF479 6 6.4 Weakly correlated
28 ZNF506 5 28.9 Weakly correlated
29 ZNF251 4 94.0 Weakly correlated
30 ZNF337 4 43.0 Weakly correlated
31 ZNF101 4 43.0 Weakly correlated
32 ZNF250 4 99.0 Weakly correlated
33 ZNF677 4 99.0 Weakly correlated
34 ZNF471 3 94.0 Weakly correlated
35 ZNF597 2 94.0 Weakly correlated
36 ZNF75D 2 94.0 Weakly correlated
37 ZNF287 2 99.0 Weakly correlated
38 ZNF175 2 94.0 Weakly correlated
39 ZNF324 2 99.0 Weakly correlated
40 ZNF2 1 99.0 Weakly correlated
41 ZNF160 1 74.0 Highly correlated
42 ZNF93 1 8.6 Weakly correlated
43 ZNF735 1 28.9 Weakly correlated
44 ZNF33A 1 99.0 Weakly correlated
45 ZNF530 1 28.9 Weakly correlated
46 ZNF28 1 28.9 Weakly correlated
47 ZNF701 1 28.9 Weakly correlated
48 ZNF354A 1 99.0 Weakly correlated
49 ZNF671 1 94.0 Weakly correlated
50 ZFP57 1 87.0 Weakly correlated
51 ZFP69B 1 99.0 Weakly correlated
52 ZNF154 1 94.0 Weakly correlated
53 ZNF18 1 160.0 Weakly correlated
54 ZNF394 1 99.0 Weakly correlated
55 ZNF429 1 28.9 Weakly correlated
56 ZNF569 1 99.0 Weakly correlated
57 ZNF140 1 99.0 Weakly correlated
58 ZNF257 1 0.0 Weakly correlated
59 ZNF264 1 99.0 Weakly correlated
60 ZNF641 1 99.0 Weakly correlated
61 ZNF85 1 28.9 Weakly correlated
62 ZNF695 1 28.9 Weakly correlated
63 ZNF705B 1 28.9 Weakly correlated
64 ZNF707 1 74.0 Highly correlated
65 ZNF202 1 160.0 Weakly correlated
66 ZNF320 1 28.9 Weakly correlated
67 ZNF483 1 99.0 Weakly correlated
68 ZFP28 1 99.0 Weakly correlated
69 ZNF585A 1 99.0 Weakly correlated
70 ZNF626 1 0.0 Weakly correlated
71 ZNF649 1 28.9 Weakly correlated
72 ZNF789 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP90 99.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF317 99.0 Weakly correlated
4 ZNF486 8.6 Weakly correlated
5 ZNF84 99.0 Weakly correlated
6 ZNF92 28.9 Weakly correlated