ZRdb KZFP & Repeats
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LINE_L1PA13_3END

  • Name
    L1PA13_3END
  • Repbase
    L1PA13
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000331
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagcatctataaggaacttaaacaaatttacaagaaaaaaacaaacaaccccattaaaaagtgggcaaaggacatgaacagacacttttcaaaagaagacatacatgcggccaacaatcatatgaaaaaaagctcaacatcactgatcattagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtcagaatggctattattaaaaagtcaaaaaataacagatgctggcgaggttgcggagaaaaaggaacgcttatacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggcgattcctcaaagacctaaagacagaaataccattcgacccagcaatcccattactgggtatatacccaaaggaatataaatcgttctattataaagacacatgcacgcgtatgttcattgcagcactattcacaatagcaaagacatggaatcaacctaaatgcccatcaatgatagactggataaagaaaatgtggtacatatacaccatggaatactatgcagccataaaaaagaacgagatcatgtcctttgcagggacatggatggagctggaggccattatccttagcaaactaacgcaggaacagaaaaccaaataccgcatgttctcacttataagtgggagctaaatgatgagaacacatggacacatagaggggaacaacacacactggggcctatcggagggtggagggtgggaggagggagaggatcaggaaaaataactaatgggtactaggcttaatacctgggtgatgaaataatctgtacaacaaacccccatgacacaagtttacctatgtaacaaacctgcacatgtacccctgaacttaaaataaaagttaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 669 8.6 Weakly correlated
2 ZNF382 537 99.0 Weakly correlated
3 ZNF705B 414 28.9 Weakly correlated
4 ZNF490 344 43.0 Weakly correlated
5 ZNF92 297 28.9 Weakly correlated
6 ZNF705D 292 28.9 Weakly correlated
7 ZNF263 291 180.0 Weakly correlated
8 ZNF84 291 99.0 Weakly correlated
9 ZNF317 210 99.0 Weakly correlated
10 ZNF8 134 99.0 Weakly correlated
11 ZIM3 108 87.0 Weakly correlated
12 ZNF679 105 28.9 Weakly correlated
13 ZNF558 99 99.0 Weakly correlated
14 ZNF248 97 99.0 Weakly correlated
15 ZNF485 96 94.0 Weakly correlated
16 ZNF479 69 6.4 Weakly correlated
17 ZNF394 65 99.0 Weakly correlated
18 ZNF723 60 15.2 Weakly correlated
19 ZNF766 53 43.0 Weakly correlated
20 ZNF680 48 28.9 Weakly correlated
21 ZNF433 41 43.0 Weakly correlated
22 ZNF2 33 99.0 Weakly correlated
23 ZNF324 33 99.0 Weakly correlated
24 ZFP37 31 99.0 Weakly correlated
25 ZNF136 30 74.0 Highly correlated
26 ZNF274 30 99.0 Weakly correlated
27 ZNF101 29 43.0 Weakly correlated
28 ZNF534 29 19.6 Weakly correlated
29 ZNF793 29 99.0 Weakly correlated
30 ZFP57 24 87.0 Weakly correlated
31 ZNF483 24 99.0 Weakly correlated
32 ZNF133 23 99.0 Weakly correlated
33 ZNF28 23 28.9 Weakly correlated
34 ZNF589 22 28.9 Weakly correlated
35 ZNF175 21 94.0 Weakly correlated
36 ZNF75D 19 94.0 Weakly correlated
37 ZNF547 18 74.0 Highly correlated
38 ZNF18 17 160.0 Weakly correlated
39 ZNF786 17 99.0 Weakly correlated
40 ZNF10 15 99.0 Weakly correlated
41 ZNF251 15 94.0 Weakly correlated
42 ZNF114 14 28.9 Weakly correlated
43 ZKSCAN1 13 160.0 Weakly correlated
44 ZNF320 13 28.9 Weakly correlated
45 ZNF584 13 99.0 Weakly correlated
46 ZFP69B 12 99.0 Weakly correlated
47 ZNF224 12 69.0 Moderately correlated
48 ZNF287 12 99.0 Weakly correlated
49 ZNF160 11 74.0 Highly correlated
50 ZNF257 11 0.0 Weakly correlated
51 ZFP90 10 99.0 Weakly correlated
52 ZNF141 10 43.0 Weakly correlated
53 ZNF471 10 94.0 Weakly correlated
54 ZNF519 10 19.6 Weakly correlated
55 ZNF250 9 99.0 Weakly correlated
56 ZNF337 9 43.0 Weakly correlated
57 ZNF585A 9 99.0 Weakly correlated
58 ZKSCAN8 8 160.0 Weakly correlated
59 ZNF140 8 99.0 Weakly correlated
60 ZNF197 8 99.0 Weakly correlated
61 ZNF425 8 94.0 Weakly correlated
62 ZNF506 8 28.9 Weakly correlated
63 ZNF528 8 43.0 Weakly correlated
64 ZNF701 8 28.9 Weakly correlated
65 ZNF554 7 99.0 Weakly correlated
66 ZNF264 6 99.0 Weakly correlated
67 ZNF334 6 99.0 Weakly correlated
68 ZNF182 5 99.0 Weakly correlated
69 ZNF202 5 160.0 Weakly correlated
70 ZNF211 5 94.0 Weakly correlated
71 ZNF30 5 94.0 Weakly correlated
72 ZNF468 5 28.9 Weakly correlated
73 ZNF792 5 94.0 Weakly correlated
74 ZNF808 5 19.6 Weakly correlated
75 ZNF845 5 28.9 Weakly correlated
76 ZFP28 4 99.0 Weakly correlated
77 ZNF157 4 99.0 Weakly correlated
78 ZNF17 4 69.0 Moderately correlated
79 ZNF563 4 28.9 Weakly correlated
80 ZNF610 4 28.9 Weakly correlated
81 ZNF677 4 99.0 Weakly correlated
82 ZNF707 4 74.0 Highly correlated
83 ZNF331 3 94.0 Weakly correlated
84 ZNF441 3 43.0 Weakly correlated
85 ZNF549 3 87.0 Weakly correlated
86 ZNF560 3 43.0 Weakly correlated
87 ZNF57 3 28.9 Weakly correlated
88 ZNF641 3 99.0 Weakly correlated
89 ZNF682 3 28.9 Weakly correlated
90 ZNF735 3 28.9 Weakly correlated
91 ZNF777 3 319.0 Weakly correlated
92 ZNF816 3 28.9 Weakly correlated
93 ZNF93 3 8.6 Weakly correlated
94 ZFP30 2 99.0 Weakly correlated
95 ZIK1 2 87.0 Weakly correlated
96 ZNF222 2 43.0 Weakly correlated
97 ZNF284 2 43.0 Weakly correlated
98 ZNF529 2 99.0 Weakly correlated
99 ZNF583 2 99.0 Weakly correlated
100 ZNF585B 2 99.0 Weakly correlated
101 ZNF597 2 94.0 Weakly correlated
102 ZNF671 2 94.0 Weakly correlated
103 ZNF81 2 99.0 Weakly correlated
104 ZNF878 2 43.0 Weakly correlated
105 ZFP69 1 99.0 Weakly correlated
106 ZKSCAN5 1 160.0 Weakly correlated
107 ZNF124 1 43.0 Weakly correlated
108 ZNF14 1 69.0 Moderately correlated
109 ZNF189 1 99.0 Weakly correlated
110 ZNF223 1 43.0 Weakly correlated
111 ZNF225 1 74.0 Highly correlated
112 ZNF230 1 28.9 Weakly correlated
113 ZNF253 1 19.6 Weakly correlated
114 ZNF26 1 99.0 Weakly correlated
115 ZNF273 1 28.9 Weakly correlated
116 ZNF282 1 319.0 Weakly correlated
117 ZNF302 1 43.0 Weakly correlated
118 ZNF304 1 99.0 Weakly correlated
119 ZNF350 1 99.0 Weakly correlated
120 ZNF354A 1 99.0 Weakly correlated
121 ZNF354C 1 99.0 Weakly correlated
122 ZNF37A 1 99.0 Weakly correlated
123 ZNF417 1 28.9 Weakly correlated
124 ZNF41 1 99.0 Weakly correlated
125 ZNF44 1 43.0 Weakly correlated
126 ZNF480 1 43.0 Weakly correlated
127 ZNF510 1 99.0 Weakly correlated
128 ZNF559 1 74.0 Highly correlated
129 ZNF566 1 99.0 Weakly correlated
130 ZNF567 1 99.0 Weakly correlated
131 ZNF582 1 99.0 Weakly correlated
132 ZNF587B 1 8.6 Weakly correlated
133 ZNF611 1 19.6 Weakly correlated
134 ZNF616 1 43.0 Weakly correlated
135 ZNF624 1 99.0 Weakly correlated
136 ZNF627 1 74.0 Highly correlated
137 ZNF649 1 28.9 Weakly correlated
138 ZNF681 1 28.9 Weakly correlated
139 ZNF699 1 99.0 Weakly correlated
140 ZNF700 1 28.9 Weakly correlated
141 ZNF716 1 19.6 Weakly correlated
142 ZNF765 1 8.6 Weakly correlated
143 ZNF77 1 87.0 Weakly correlated
144 ZNF780B 1 74.0 Highly correlated
145 ZNF799 1 43.0 Weakly correlated
146 ZNF85 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 519 8.6 Weakly correlated
2 ZNF490 319 43.0 Weakly correlated
3 ZNF84 278 99.0 Weakly correlated
4 ZNF92 233 28.9 Weakly correlated
5 ZNF263 184 180.0 Weakly correlated
6 ZNF8 123 99.0 Weakly correlated
7 ZNF382 111 99.0 Weakly correlated
8 ZNF248 90 99.0 Weakly correlated
9 ZNF485 82 94.0 Weakly correlated
10 ZNF317 79 99.0 Weakly correlated
11 ZIM3 69 87.0 Weakly correlated
12 ZNF479 50 6.4 Weakly correlated
13 ZNF433 36 43.0 Weakly correlated
14 ZNF723 29 15.2 Weakly correlated
15 ZNF534 24 19.6 Weakly correlated
16 ZNF136 23 74.0 Highly correlated
17 ZNF558 23 99.0 Weakly correlated
18 ZNF680 17 28.9 Weakly correlated
19 ZNF679 15 28.9 Weakly correlated
20 ZNF101 14 43.0 Weakly correlated
21 ZNF10 14 99.0 Weakly correlated
22 ZNF324 11 99.0 Weakly correlated
23 ZFP57 10 87.0 Weakly correlated
24 ZNF75D 10 94.0 Weakly correlated
25 ZNF250 9 99.0 Weakly correlated
26 ZFP90 9 99.0 Weakly correlated
27 ZNF786 8 99.0 Weakly correlated
28 ZNF160 8 74.0 Highly correlated
29 ZNF337 8 43.0 Weakly correlated
30 ZNF28 8 28.9 Weakly correlated
31 ZNF766 8 43.0 Weakly correlated
32 ZNF133 8 99.0 Weakly correlated
33 ZNF793 7 99.0 Weakly correlated
34 ZNF257 7 0.0 Weakly correlated
35 ZNF18 7 160.0 Weakly correlated
36 ZNF140 6 99.0 Weakly correlated
37 ZNF425 5 94.0 Weakly correlated
38 ZNF287 5 99.0 Weakly correlated
39 ZNF705D 5 28.9 Weakly correlated
40 ZNF506 5 28.9 Weakly correlated
41 ZNF264 4 99.0 Weakly correlated
42 ZNF141 4 43.0 Weakly correlated
43 ZNF705B 4 28.9 Weakly correlated
44 ZNF17 4 69.0 Moderately correlated
45 ZKSCAN1 4 160.0 Weakly correlated
46 ZNF468 3 28.9 Weakly correlated
47 ZNF320 3 28.9 Weakly correlated
48 ZNF471 3 94.0 Weakly correlated
49 ZNF251 3 94.0 Weakly correlated
50 ZNF792 3 94.0 Weakly correlated
51 ZNF585A 3 99.0 Weakly correlated
52 ZNF677 3 99.0 Weakly correlated
53 ZNF483 2 99.0 Weakly correlated
54 ZNF394 2 99.0 Weakly correlated
55 ZNF560 2 43.0 Weakly correlated
56 ZNF528 2 43.0 Weakly correlated
57 ZNF707 2 74.0 Highly correlated
58 ZNF30 2 94.0 Weakly correlated
59 ZNF211 2 94.0 Weakly correlated
60 ZFP28 1 99.0 Weakly correlated
61 ZNF282 1 319.0 Weakly correlated
62 ZFP69B 1 99.0 Weakly correlated
63 ZNF671 1 94.0 Weakly correlated
64 ZNF816 1 28.9 Weakly correlated
65 ZNF610 1 28.9 Weakly correlated
66 ZNF566 1 99.0 Weakly correlated
67 ZKSCAN5 1 160.0 Weakly correlated
68 ZNF331 1 94.0 Weakly correlated
69 ZNF350 1 99.0 Weakly correlated
70 ZIK1 1 87.0 Weakly correlated
71 ZNF417 1 28.9 Weakly correlated
72 ZNF81 1 99.0 Weakly correlated
73 ZNF225 1 74.0 Highly correlated
74 ZNF510 1 99.0 Weakly correlated
75 ZNF584 1 99.0 Weakly correlated
76 ZNF589 1 28.9 Weakly correlated
77 ZNF780B 1 74.0 Highly correlated
78 ZNF202 1 160.0 Weakly correlated
79 ZNF197 1 99.0 Weakly correlated
80 ZNF274 1 99.0 Weakly correlated
81 ZNF44 1 43.0 Weakly correlated
82 ZNF563 1 28.9 Weakly correlated
83 ZNF334 1 99.0 Weakly correlated
84 ZNF189 1 99.0 Weakly correlated
85 ZNF735 1 28.9 Weakly correlated
86 ZNF583 1 99.0 Weakly correlated
87 ZNF2 1 99.0 Weakly correlated
88 ZNF273 1 28.9 Weakly correlated
89 ZNF93 1 8.6 Weakly correlated
90 ZNF549 1 87.0 Weakly correlated
91 ZNF701 1 28.9 Weakly correlated
92 ZNF799 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF18 160.0 Weakly correlated
3 ZNF248 99.0 Weakly correlated
4 ZNF257 0.0 Weakly correlated
5 ZNF263 180.0 Weakly correlated
6 ZNF486 8.6 Weakly correlated
7 ZNF75D 94.0 Weakly correlated
8 ZNF84 99.0 Weakly correlated
9 ZNF92 28.9 Weakly correlated