ZRdb KZFP & Repeats
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LINE_L1PA12_3END

  • Name
    L1PA12_3END
  • Repbase
    L1PA12
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000330
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagcatctataaggaacttaaacaaatttacaagaaaaaaacaaacaaccccattaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatacatgcggccaacaatcatatgaaaaaaagctcaacatcactgatcattagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtcagaatggctattattaaaaagtcaaaaaataacagatgctggcgaggttgtggagaaaaaggaacgcttntacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggcgattcctcaaagacctaaagacagaaataccattcgacccagcaatcccattactgggtatatacccaaaggaatataaatcgttctattataaagacacatgcacgcgtatgttcattgcagcactattcacaatagcaaagacatggaatcaacctaaatgcccatcaatgatagactggataaagaaaatgtggtacatatacaccatggaatactatgcagccataaaaaagaacgagatcatgtcctttgcagggacatggatggagctggaggccattatccttagcaaactaacgcaggaacagaaaaccaaataccgcatgttctcacttataagtgggagctaaatgatgagaacacatggacacatagaggggaacaacacacactggggcctatcggagggtggagggtgggaggagggagaggatcaggaaaaataactaatggatactaggcttaatacctgggtgatgaaataatctgtacaacaaacccccatgacacacgtttacctatgtaacaaacctgcacatcctgcacatgtacccctgaacttaaaataaaagttaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 114 8.6 Weakly correlated
2 ZNF382 79 99.0 Weakly correlated
3 ZNF92 64 28.9 Weakly correlated
4 ZNF705B 55 28.9 Weakly correlated
5 ZNF490 51 43.0 Weakly correlated
6 ZNF84 48 99.0 Weakly correlated
7 ZNF705D 40 28.9 Weakly correlated
8 ZNF263 36 180.0 Weakly correlated
9 ZNF8 31 99.0 Weakly correlated
10 ZNF679 24 28.9 Weakly correlated
11 ZNF793 21 99.0 Weakly correlated
12 ZIM3 19 87.0 Weakly correlated
13 ZNF558 18 99.0 Weakly correlated
14 ZNF534 18 19.6 Weakly correlated
15 ZNF248 17 99.0 Weakly correlated
16 ZNF680 15 28.9 Weakly correlated
17 ZNF485 14 94.0 Weakly correlated
18 ZNF560 13 43.0 Weakly correlated
19 ZNF766 13 43.0 Weakly correlated
20 ZNF394 11 99.0 Weakly correlated
21 ZNF317 11 99.0 Weakly correlated
22 ZNF433 11 43.0 Weakly correlated
23 ZNF479 10 6.4 Weakly correlated
24 ZNF75D 9 94.0 Weakly correlated
25 ZNF786 9 99.0 Weakly correlated
26 ZNF28 8 28.9 Weakly correlated
27 ZNF251 8 94.0 Weakly correlated
28 ZNF506 8 28.9 Weakly correlated
29 ZNF133 8 99.0 Weakly correlated
30 ZNF175 7 94.0 Weakly correlated
31 ZNF324 7 99.0 Weakly correlated
32 ZNF320 7 28.9 Weakly correlated
33 ZFP69B 7 99.0 Weakly correlated
34 ZNF468 6 28.9 Weakly correlated
35 ZNF723 6 15.2 Weakly correlated
36 ZNF2 6 99.0 Weakly correlated
37 ZFP37 5 99.0 Weakly correlated
38 ZNF274 5 99.0 Weakly correlated
39 ZFP90 5 99.0 Weakly correlated
40 ZNF735 4 28.9 Weakly correlated
41 ZNF18 4 160.0 Weakly correlated
42 ZNF528 4 43.0 Weakly correlated
43 ZNF101 4 43.0 Weakly correlated
44 ZFP57 3 87.0 Weakly correlated
45 ZNF334 3 99.0 Weakly correlated
46 ZNF589 3 28.9 Weakly correlated
47 ZNF597 3 94.0 Weakly correlated
48 ZNF701 3 28.9 Weakly correlated
49 ZNF445 3 99.0 Weakly correlated
50 ZNF182 3 99.0 Weakly correlated
51 ZNF471 3 94.0 Weakly correlated
52 ZNF141 3 43.0 Weakly correlated
53 ZNF136 2 74.0 Highly correlated
54 ZNF302 2 43.0 Weakly correlated
55 ZNF554 2 99.0 Weakly correlated
56 ZNF547 2 74.0 Highly correlated
57 ZNF519 2 19.6 Weakly correlated
58 ZNF483 2 99.0 Weakly correlated
59 ZNF202 2 160.0 Weakly correlated
60 ZNF792 2 94.0 Weakly correlated
61 ZKSCAN1 2 160.0 Weakly correlated
62 ZNF257 2 0.0 Weakly correlated
63 ZNF429 2 28.9 Weakly correlated
64 ZNF425 2 94.0 Weakly correlated
65 ZNF284 2 43.0 Weakly correlated
66 ZNF264 2 99.0 Weakly correlated
67 ZNF287 2 99.0 Weakly correlated
68 ZNF823 2 43.0 Weakly correlated
69 ZFP30 1 99.0 Weakly correlated
70 ZNF140 1 99.0 Weakly correlated
71 ZNF695 1 28.9 Weakly correlated
72 ZNF845 1 28.9 Weakly correlated
73 ZNF114 1 28.9 Weakly correlated
74 ZNF705E 1 0.0 Weakly correlated
75 ZNF10 1 99.0 Weakly correlated
76 ZNF808 1 19.6 Weakly correlated
77 ZNF765 1 8.6 Weakly correlated
78 ZNF100 1 28.9 Weakly correlated
79 ZKSCAN8 1 160.0 Weakly correlated
80 ZNF189 1 99.0 Weakly correlated
81 ZNF273 1 28.9 Weakly correlated
82 ZNF331 1 94.0 Weakly correlated
83 ZNF333 1 99.0 Weakly correlated
84 ZNF33A 1 99.0 Weakly correlated
85 ZNF26 1 99.0 Weakly correlated
86 ZNF41 1 99.0 Weakly correlated
87 ZNF441 1 43.0 Weakly correlated
88 ZNF250 1 99.0 Weakly correlated
89 ZNF197 1 99.0 Weakly correlated
90 ZNF677 1 99.0 Weakly correlated
91 ZNF17 1 69.0 Moderately correlated
92 ZNF160 1 74.0 Highly correlated
93 ZNF157 1 99.0 Weakly correlated
94 ZNF567 1 99.0 Weakly correlated
95 ZNF584 1 99.0 Weakly correlated
96 ZNF585A 1 99.0 Weakly correlated
97 ZNF585B 1 99.0 Weakly correlated
98 ZNF610 1 28.9 Weakly correlated
99 ZNF641 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 78 8.6 Weakly correlated
2 ZNF92 56 28.9 Weakly correlated
3 ZNF84 47 99.0 Weakly correlated
4 ZNF490 43 43.0 Weakly correlated
5 ZNF8 26 99.0 Weakly correlated
6 ZNF263 18 180.0 Weakly correlated
7 ZNF248 17 99.0 Weakly correlated
8 ZIM3 12 87.0 Weakly correlated
9 ZNF382 12 99.0 Weakly correlated
10 ZNF485 12 94.0 Weakly correlated
11 ZNF793 11 99.0 Weakly correlated
12 ZNF534 9 19.6 Weakly correlated
13 ZNF433 9 43.0 Weakly correlated
14 ZNF506 8 28.9 Weakly correlated
15 ZNF680 6 28.9 Weakly correlated
16 ZNF679 6 28.9 Weakly correlated
17 ZNF786 6 99.0 Weakly correlated
18 ZNF317 5 99.0 Weakly correlated
19 ZNF75D 5 94.0 Weakly correlated
20 ZFP90 5 99.0 Weakly correlated
21 ZNF558 4 99.0 Weakly correlated
22 ZNF723 3 15.2 Weakly correlated
23 ZNF471 3 94.0 Weakly correlated
24 ZNF705D 3 28.9 Weakly correlated
25 ZFP57 2 87.0 Weakly correlated
26 ZNF677 2 99.0 Weakly correlated
27 ZNF133 2 99.0 Weakly correlated
28 ZNF136 2 74.0 Highly correlated
29 ZNF320 2 28.9 Weakly correlated
30 ZNF468 2 28.9 Weakly correlated
31 ZNF425 2 94.0 Weakly correlated
32 ZNF766 2 43.0 Weakly correlated
33 ZNF479 2 6.4 Weakly correlated
34 ZNF324 1 99.0 Weakly correlated
35 ZNF695 1 28.9 Weakly correlated
36 ZNF18 1 160.0 Weakly correlated
37 ZNF10 1 99.0 Weakly correlated
38 ZNF735 1 28.9 Weakly correlated
39 ZNF257 1 0.0 Weakly correlated
40 ZNF641 1 99.0 Weakly correlated
41 ZNF597 1 94.0 Weakly correlated
42 ZNF287 1 99.0 Weakly correlated
43 ZNF141 1 43.0 Weakly correlated
44 ZNF175 1 94.0 Weakly correlated
45 ZNF792 1 94.0 Weakly correlated
46 ZNF273 1 28.9 Weakly correlated
47 ZNF251 1 94.0 Weakly correlated
48 ZNF2 1 99.0 Weakly correlated
49 ZNF567 1 99.0 Weakly correlated
50 ZNF429 1 28.9 Weakly correlated
51 ZNF189 1 99.0 Weakly correlated
52 ZNF701 1 28.9 Weakly correlated
53 ZNF250 1 99.0 Weakly correlated
54 ZNF445 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF248 99.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF486 8.6 Weakly correlated
4 ZNF84 99.0 Weakly correlated
5 ZNF92 28.9 Weakly correlated