ZRdb KZFP & Repeats
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LINE_L1PA11_3END

  • Name
    L1PA11_3END
  • Repbase
    L1PA11
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000329
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagagtctacaaggaacttaaacaaatttacaagaaaaaaacaaacaaccccattaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatacatgcggccaacaaacatatgaaaaaaagctcaacatcactgatcattagagaaatgcaaatcaaaaccacaatgagataccatctcacgccagtcagaatggctattattaaaaagtcaaaaaacaacagatgctggcgaggttgcggagaaaaaggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggcgattcctcaaagacctagaggcagaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctattataaagatacatgcacgcgtatgttcattgcagcactattcacaatagcaaagacatggaatcaacctaaatgcccatcaatgatagactggataaagaaaatgtggtacatatacaccatggaatactatgcagccataaaaaggaacgagatcatgtcctttgcagggacatggatggagctggaagccattatcctcagcaaactaacgcaggaacagaaaaccaaacaccgcatgttctcacttataagtgggagctgaatgatgagaacacatggacacatggnggggaacaacacacactggggcctgtcggagggtggggggtggggggagggagagcatcaggaagaatagctaatggatgctgggcttaatacctaggtgatgggatgatctgtgcagcaaaccaccatggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtacccctgaacttaaaataaaagttgaagaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 261 8.6 Weakly correlated
2 ZNF382 239 99.0 Weakly correlated
3 ZNF84 228 99.0 Weakly correlated
4 ZNF92 217 28.9 Weakly correlated
5 ZNF490 206 43.0 Weakly correlated
6 ZNF263 173 180.0 Weakly correlated
7 ZNF705B 104 28.9 Weakly correlated
8 ZNF317 91 99.0 Weakly correlated
9 ZNF679 85 28.9 Weakly correlated
10 ZNF248 80 99.0 Weakly correlated
11 ZIM3 59 87.0 Weakly correlated
12 ZNF705D 59 28.9 Weakly correlated
13 ZNF558 55 99.0 Weakly correlated
14 ZNF8 55 99.0 Weakly correlated
15 ZNF766 41 43.0 Weakly correlated
16 ZNF394 31 99.0 Weakly correlated
17 ZNF534 24 19.6 Weakly correlated
18 ZNF547 24 74.0 Highly correlated
19 ZFP57 23 87.0 Weakly correlated
20 ZNF136 20 74.0 Highly correlated
21 ZNF479 20 6.4 Weakly correlated
22 ZNF324 18 99.0 Weakly correlated
23 ZNF75D 17 94.0 Weakly correlated
24 ZKSCAN1 16 160.0 Weakly correlated
25 ZNF677 16 99.0 Weakly correlated
26 ZNF786 16 99.0 Weakly correlated
27 ZNF18 15 160.0 Weakly correlated
28 ZNF425 15 94.0 Weakly correlated
29 ZNF680 15 28.9 Weakly correlated
30 ZNF793 15 99.0 Weakly correlated
31 ZNF197 14 99.0 Weakly correlated
32 ZNF320 14 28.9 Weakly correlated
33 ZNF337 14 43.0 Weakly correlated
34 ZNF723 14 15.2 Weakly correlated
35 ZNF274 12 99.0 Weakly correlated
36 ZNF2 12 99.0 Weakly correlated
37 ZNF528 12 43.0 Weakly correlated
38 ZNF589 12 28.9 Weakly correlated
39 ZNF583 11 99.0 Weakly correlated
40 ZNF101 10 43.0 Weakly correlated
41 ZNF175 10 94.0 Weakly correlated
42 ZNF506 10 28.9 Weakly correlated
43 ZFP69B 9 99.0 Weakly correlated
44 ZNF485 9 94.0 Weakly correlated
45 ZFP37 8 99.0 Weakly correlated
46 ZNF133 8 99.0 Weakly correlated
47 ZFP90 7 99.0 Weakly correlated
48 ZNF160 7 74.0 Highly correlated
49 ZNF182 7 99.0 Weakly correlated
50 ZNF519 7 19.6 Weakly correlated
51 ZNF584 7 99.0 Weakly correlated
52 ZKSCAN8 6 160.0 Weakly correlated
53 ZNF10 6 99.0 Weakly correlated
54 ZNF141 6 43.0 Weakly correlated
55 ZNF17 6 69.0 Moderately correlated
56 ZNF251 6 94.0 Weakly correlated
57 ZNF483 6 99.0 Weakly correlated
58 ZNF554 6 99.0 Weakly correlated
59 ZNF585A 6 99.0 Weakly correlated
60 ZNF597 6 94.0 Weakly correlated
61 ZFP28 5 99.0 Weakly correlated
62 ZNF140 5 99.0 Weakly correlated
63 ZNF257 5 0.0 Weakly correlated
64 ZNF28 5 28.9 Weakly correlated
65 ZNF610 5 28.9 Weakly correlated
66 ZNF202 4 160.0 Weakly correlated
67 ZNF250 4 99.0 Weakly correlated
68 ZNF331 4 94.0 Weakly correlated
69 ZNF560 4 43.0 Weakly correlated
70 ZNF264 3 99.0 Weakly correlated
71 ZNF287 3 99.0 Weakly correlated
72 ZNF429 3 28.9 Weakly correlated
73 ZNF471 3 94.0 Weakly correlated
74 ZNF549 3 87.0 Weakly correlated
75 ZNF682 3 28.9 Weakly correlated
76 ZNF701 3 28.9 Weakly correlated
77 ZNF808 3 19.6 Weakly correlated
78 ZNF157 2 99.0 Weakly correlated
79 ZNF211 2 94.0 Weakly correlated
80 ZNF253 2 19.6 Weakly correlated
81 ZNF284 2 43.0 Weakly correlated
82 ZNF334 2 99.0 Weakly correlated
83 ZNF33A 2 99.0 Weakly correlated
84 ZNF350 2 99.0 Weakly correlated
85 ZNF418 2 43.0 Weakly correlated
86 ZNF441 2 43.0 Weakly correlated
87 ZNF44 2 43.0 Weakly correlated
88 ZNF468 2 28.9 Weakly correlated
89 ZNF567 2 99.0 Weakly correlated
90 ZNF585B 2 99.0 Weakly correlated
91 ZNF700 2 28.9 Weakly correlated
92 ZNF735 2 28.9 Weakly correlated
93 ZNF736 2 43.0 Weakly correlated
94 ZNF823 2 43.0 Weakly correlated
95 ZNF879 2 99.0 Weakly correlated
96 ZNF93 2 8.6 Weakly correlated
97 ZNF114 1 28.9 Weakly correlated
98 ZNF222 1 43.0 Weakly correlated
99 ZNF230 1 28.9 Weakly correlated
100 ZNF273 1 28.9 Weakly correlated
101 ZNF282 1 319.0 Weakly correlated
102 ZNF430 1 19.6 Weakly correlated
103 ZNF440 1 28.9 Weakly correlated
104 ZNF540 1 87.0 Weakly correlated
105 ZNF563 1 28.9 Weakly correlated
106 ZNF573 1 94.0 Weakly correlated
107 ZNF586 1 43.0 Weakly correlated
108 ZNF627 1 74.0 Highly correlated
109 ZNF630 1 94.0 Weakly correlated
110 ZNF641 1 99.0 Weakly correlated
111 ZNF674 1 99.0 Weakly correlated
112 ZNF675 1 8.6 Weakly correlated
113 ZNF695 1 28.9 Weakly correlated
114 ZNF707 1 74.0 Highly correlated
115 ZNF75A 1 94.0 Weakly correlated
116 ZNF763 1 15.2 Weakly correlated
117 ZNF765 1 8.6 Weakly correlated
118 ZNF778 1 74.0 Highly correlated
119 ZNF790 1 99.0 Weakly correlated
120 ZNF792 1 94.0 Weakly correlated
121 ZNF845 1 28.9 Weakly correlated
122 ZNF850 1 28.9 Weakly correlated
123 ZNF878 1 43.0 Weakly correlated
124 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF84 216 99.0 Weakly correlated
2 ZNF486 209 8.6 Weakly correlated
3 ZNF490 185 43.0 Weakly correlated
4 ZNF92 181 28.9 Weakly correlated
5 ZNF263 128 180.0 Weakly correlated
6 ZNF248 81 99.0 Weakly correlated
7 ZNF382 62 99.0 Weakly correlated
8 ZNF8 51 99.0 Weakly correlated
9 ZIM3 39 87.0 Weakly correlated
10 ZNF317 30 99.0 Weakly correlated
11 ZNF534 17 19.6 Weakly correlated
12 ZNF136 16 74.0 Highly correlated
13 ZNF558 16 99.0 Weakly correlated
14 ZNF677 16 99.0 Weakly correlated
15 ZNF337 15 43.0 Weakly correlated
16 ZNF679 15 28.9 Weakly correlated
17 ZFP57 13 87.0 Weakly correlated
18 ZNF786 13 99.0 Weakly correlated
19 ZNF425 12 94.0 Weakly correlated
20 ZNF75D 10 94.0 Weakly correlated
21 ZNF324 9 99.0 Weakly correlated
22 ZNF528 6 43.0 Weakly correlated
23 ZNF766 6 43.0 Weakly correlated
24 ZNF394 6 99.0 Weakly correlated
25 ZFP90 6 99.0 Weakly correlated
26 ZNF506 6 28.9 Weakly correlated
27 ZNF479 6 6.4 Weakly correlated
28 ZNF10 5 99.0 Weakly correlated
29 ZNF101 5 43.0 Weakly correlated
30 ZNF18 5 160.0 Weakly correlated
31 ZNF141 5 43.0 Weakly correlated
32 ZNF585A 5 99.0 Weakly correlated
33 ZNF320 4 28.9 Weakly correlated
34 ZNF250 4 99.0 Weakly correlated
35 ZNF160 4 74.0 Highly correlated
36 ZNF140 4 99.0 Weakly correlated
37 ZNF197 4 99.0 Weakly correlated
38 ZNF597 4 94.0 Weakly correlated
39 ZNF723 4 15.2 Weakly correlated
40 ZNF485 4 94.0 Weakly correlated
41 ZNF793 3 99.0 Weakly correlated
42 ZNF680 3 28.9 Weakly correlated
43 ZNF17 3 69.0 Moderately correlated
44 ZNF257 3 0.0 Weakly correlated
45 ZNF264 2 99.0 Weakly correlated
46 ZNF682 2 28.9 Weakly correlated
47 ZNF610 2 28.9 Weakly correlated
48 ZNF554 2 99.0 Weakly correlated
49 ZNF175 2 94.0 Weakly correlated
50 ZKSCAN1 2 160.0 Weakly correlated
51 ZNF471 2 94.0 Weakly correlated
52 ZNF44 2 43.0 Weakly correlated
53 ZNF468 2 28.9 Weakly correlated
54 ZNF792 1 94.0 Weakly correlated
55 ZNF573 1 94.0 Weakly correlated
56 ZNF705B 1 28.9 Weakly correlated
57 ZNF674 1 99.0 Weakly correlated
58 ZNF583 1 99.0 Weakly correlated
59 ZNF735 1 28.9 Weakly correlated
60 ZFP69B 1 99.0 Weakly correlated
61 ZNF133 1 99.0 Weakly correlated
62 ZNF202 1 160.0 Weakly correlated
63 ZNF334 1 99.0 Weakly correlated
64 ZNF430 1 19.6 Weakly correlated
65 ZNF251 1 94.0 Weakly correlated
66 ZNF549 1 87.0 Weakly correlated
67 ZNF879 1 99.0 Weakly correlated
68 ZNF114 1 28.9 Weakly correlated
69 ZNF287 1 99.0 Weakly correlated
70 ZNF589 1 28.9 Weakly correlated
71 ZNF641 1 99.0 Weakly correlated
72 ZNF701 1 28.9 Weakly correlated
73 ZNF707 1 74.0 Highly correlated
74 ZNF211 1 94.0 Weakly correlated
75 ZNF823 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF248 99.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF486 8.6 Weakly correlated
5 ZNF84 99.0 Weakly correlated
6 ZNF92 28.9 Weakly correlated