ZRdb KZFP & Repeats
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LINE_L1PA10_3END

  • Name
    L1PA10_3END
  • Repbase
    L1PA10
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000327
Description :

ORF2 ends at bp 684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaaggaacttaaacaaatttacaagaaaaaaacaaacaaccccattaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatttatgcggccaacaaacatatgaaaaaaagctcaacatcactgatcattagagaaatgcaaatcaaaaccacaatgagataccatctcacgccagtcagaatggcgattattaaaaagtcaagaaacaacagatgctggcgaggctgcggagaaataggaacgcttttacactgttggtgggaatgtaaattagttcaaccattgtggaagacagtgtggcgattcctcaaagacctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctattataaagatacatgcacgcgtatgttcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcccatcaatgatagactggataaagaaaatgtggtacatatacaccatggaatactatgcagccataaaaaggaacgagatcatgtcctttgcagggacatggatggagctggaagccattatcctcagcaaactaacgcaggaacagaaaaccaaacaccgcatgttctcacttataagtgggagctgaacaatgagaacacatggacacagggaggggaacaacacacactggggcctgtcggggggtgggggcggggggagggagagcatcaggaaaaatagctaatgcatgctgggcttaatacctaggtgatgggttgataggtgcagcaaaccaccatggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccccggaacttaaaataaaaattaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 663 99.0 Weakly correlated
2 ZNF486 474 8.6 Weakly correlated
3 ZNF84 346 99.0 Weakly correlated
4 ZNF490 339 43.0 Weakly correlated
5 ZNF92 326 28.9 Weakly correlated
6 ZNF317 182 99.0 Weakly correlated
7 ZIM3 166 87.0 Weakly correlated
8 ZNF679 119 28.9 Weakly correlated
9 ZNF248 110 99.0 Weakly correlated
10 ZNF263 104 180.0 Weakly correlated
11 ZNF705B 95 28.9 Weakly correlated
12 ZNF8 92 99.0 Weakly correlated
13 ZNF680 51 28.9 Weakly correlated
14 ZNF394 47 99.0 Weakly correlated
15 ZNF705D 46 28.9 Weakly correlated
16 ZNF558 45 99.0 Weakly correlated
17 ZNF766 44 43.0 Weakly correlated
18 ZNF793 44 99.0 Weakly correlated
19 ZNF75D 37 94.0 Weakly correlated
20 ZNF136 36 74.0 Highly correlated
21 ZNF677 36 99.0 Weakly correlated
22 ZNF534 33 19.6 Weakly correlated
23 ZNF2 32 99.0 Weakly correlated
24 ZNF519 31 19.6 Weakly correlated
25 ZFP57 30 87.0 Weakly correlated
26 ZNF337 27 43.0 Weakly correlated
27 ZNF479 27 6.4 Weakly correlated
28 ZNF425 26 94.0 Weakly correlated
29 ZFP37 24 99.0 Weakly correlated
30 ZNF583 22 99.0 Weakly correlated
31 ZNF786 22 99.0 Weakly correlated
32 ZNF251 20 94.0 Weakly correlated
33 ZNF10 19 99.0 Weakly correlated
34 ZNF141 17 43.0 Weakly correlated
35 ZNF506 17 28.9 Weakly correlated
36 ZNF589 16 28.9 Weakly correlated
37 ZNF723 16 15.2 Weakly correlated
38 ZFP69B 14 99.0 Weakly correlated
39 ZFP90 14 99.0 Weakly correlated
40 ZKSCAN1 14 160.0 Weakly correlated
41 ZNF18 14 160.0 Weakly correlated
42 ZNF28 14 28.9 Weakly correlated
43 ZNF101 13 43.0 Weakly correlated
44 ZNF160 13 74.0 Highly correlated
45 ZNF324 13 99.0 Weakly correlated
46 ZNF528 13 43.0 Weakly correlated
47 ZNF547 13 74.0 Highly correlated
48 ZNF133 12 99.0 Weakly correlated
49 ZNF182 11 99.0 Weakly correlated
50 ZNF274 11 99.0 Weakly correlated
51 ZNF114 10 28.9 Weakly correlated
52 ZNF175 10 94.0 Weakly correlated
53 ZNF197 10 99.0 Weakly correlated
54 ZNF468 10 28.9 Weakly correlated
55 ZNF560 10 43.0 Weakly correlated
56 ZNF585A 10 99.0 Weakly correlated
57 ZNF701 10 28.9 Weakly correlated
58 ZNF140 9 99.0 Weakly correlated
59 ZNF287 9 99.0 Weakly correlated
60 ZNF320 9 28.9 Weakly correlated
61 ZNF485 9 94.0 Weakly correlated
62 ZNF610 8 28.9 Weakly correlated
63 ZNF17 7 69.0 Moderately correlated
64 ZNF250 7 99.0 Weakly correlated
65 ZNF584 7 99.0 Weakly correlated
66 ZNF597 7 94.0 Weakly correlated
67 ZNF93 7 8.6 Weakly correlated
68 ZKSCAN8 6 160.0 Weakly correlated
69 ZNF202 6 160.0 Weakly correlated
70 ZNF441 6 43.0 Weakly correlated
71 ZNF549 6 87.0 Weakly correlated
72 ZNF624 6 99.0 Weakly correlated
73 ZNF735 6 28.9 Weakly correlated
74 ZNF429 5 28.9 Weakly correlated
75 ZNF483 5 99.0 Weakly correlated
76 ZNF554 5 99.0 Weakly correlated
77 ZNF682 5 28.9 Weakly correlated
78 ZNF705A 5 28.9 Weakly correlated
79 ZNF157 4 99.0 Weakly correlated
80 ZNF33A 4 99.0 Weakly correlated
81 ZNF41 4 99.0 Weakly correlated
82 ZNF471 4 94.0 Weakly correlated
83 ZNF732 4 28.9 Weakly correlated
84 ZNF780A 4 43.0 Weakly correlated
85 ZNF808 4 19.6 Weakly correlated
86 ZNF91 4 6.0 Weakly correlated
87 ZIK1 3 87.0 Weakly correlated
88 ZNF227 3 99.0 Weakly correlated
89 ZNF257 3 0.0 Weakly correlated
90 ZNF331 3 94.0 Weakly correlated
91 ZNF354A 3 99.0 Weakly correlated
92 ZNF454 3 99.0 Weakly correlated
93 ZNF573 3 94.0 Weakly correlated
94 ZNF599 3 99.0 Weakly correlated
95 ZNF665 3 28.9 Weakly correlated
96 ZNF675 3 8.6 Weakly correlated
97 ZNF700 3 28.9 Weakly correlated
98 ZNF707 3 74.0 Highly correlated
99 ZNF773 3 94.0 Weakly correlated
100 ZNF823 3 43.0 Weakly correlated
101 ZNF852 3 94.0 Weakly correlated
102 ZFP28 2 99.0 Weakly correlated
103 ZNF112 2 99.0 Weakly correlated
104 ZNF169 2 94.0 Weakly correlated
105 ZNF189 2 99.0 Weakly correlated
106 ZNF215 2 99.0 Weakly correlated
107 ZNF225 2 74.0 Highly correlated
108 ZNF230 2 28.9 Weakly correlated
109 ZNF26 2 99.0 Weakly correlated
110 ZNF284 2 43.0 Weakly correlated
111 ZNF334 2 99.0 Weakly correlated
112 ZNF43 2 43.0 Weakly correlated
113 ZNF445 2 99.0 Weakly correlated
114 ZNF563 2 28.9 Weakly correlated
115 ZNF585B 2 99.0 Weakly correlated
116 ZNF587B 2 8.6 Weakly correlated
117 ZNF611 2 19.6 Weakly correlated
118 ZNF630 2 94.0 Weakly correlated
119 ZNF669 2 43.0 Weakly correlated
120 ZNF695 2 28.9 Weakly correlated
121 ZNF761 2 19.6 Weakly correlated
122 ZNF765 2 8.6 Weakly correlated
123 ZNF777 2 319.0 Weakly correlated
124 ZNF829 2 99.0 Weakly correlated
125 ZNF836 2 43.0 Weakly correlated
126 RBAK 1 99.0 Weakly correlated
127 ZFP1 1 99.0 Weakly correlated
128 ZKSCAN2 1 180.0 Weakly correlated
129 ZKSCAN4 1 99.0 Weakly correlated
130 ZNF100 1 28.9 Weakly correlated
131 ZNF124 1 43.0 Weakly correlated
132 ZNF14 1 69.0 Moderately correlated
133 ZNF177 1 94.0 Weakly correlated
134 ZNF20 1 43.0 Weakly correlated
135 ZNF211 1 94.0 Weakly correlated
136 ZNF214 1 99.0 Weakly correlated
137 ZNF222 1 43.0 Weakly correlated
138 ZNF224 1 69.0 Moderately correlated
139 ZNF226 1 99.0 Weakly correlated
140 ZNF233 1 99.0 Weakly correlated
141 ZNF234 1 99.0 Weakly correlated
142 ZNF256 1 74.0 Highly correlated
143 ZNF268 1 94.0 Weakly correlated
144 ZNF273 1 28.9 Weakly correlated
145 ZNF282 1 319.0 Weakly correlated
146 ZNF30 1 94.0 Weakly correlated
147 ZNF416 1 43.0 Weakly correlated
148 ZNF417 1 28.9 Weakly correlated
149 ZNF418 1 43.0 Weakly correlated
150 ZNF420 1 94.0 Weakly correlated
151 ZNF430 1 19.6 Weakly correlated
152 ZNF439 1 8.6 Weakly correlated
153 ZNF470 1 99.0 Weakly correlated
154 ZNF480 1 43.0 Weakly correlated
155 ZNF510 1 99.0 Weakly correlated
156 ZNF514 1 94.0 Weakly correlated
157 ZNF517 1 94.0 Weakly correlated
158 ZNF529 1 99.0 Weakly correlated
159 ZNF544 1 0.0 Weakly correlated
160 ZNF556 1 94.0 Weakly correlated
161 ZNF557 1 15.2 Weakly correlated
162 ZNF559 1 74.0 Highly correlated
163 ZNF567 1 99.0 Weakly correlated
164 ZNF578 1 15.2 Weakly correlated
165 ZNF587 1 28.9 Weakly correlated
166 ZNF605 1 99.0 Weakly correlated
167 ZNF627 1 74.0 Highly correlated
168 ZNF671 1 94.0 Weakly correlated
169 ZNF688 1 160.0 Weakly correlated
170 ZNF709 1 87.0 Weakly correlated
171 ZNF718 1 19.6 Weakly correlated
172 ZNF726 1 28.9 Weakly correlated
173 ZNF729 1 8.6 Weakly correlated
174 ZNF746 1 99.0 Weakly correlated
175 ZNF776 1 43.0 Weakly correlated
176 ZNF778 1 74.0 Highly correlated
177 ZNF789 1 99.0 Weakly correlated
178 ZNF816 1 28.9 Weakly correlated
179 ZNF846 1 74.0 Highly correlated
180 ZNF850 1 28.9 Weakly correlated
181 ZNF85 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 382 8.6 Weakly correlated
2 ZNF84 323 99.0 Weakly correlated
3 ZNF490 314 43.0 Weakly correlated
4 ZNF92 265 28.9 Weakly correlated
5 ZNF382 151 99.0 Weakly correlated
6 ZIM3 122 87.0 Weakly correlated
7 ZNF248 109 99.0 Weakly correlated
8 ZNF8 79 99.0 Weakly correlated
9 ZNF317 71 99.0 Weakly correlated
10 ZNF263 58 180.0 Weakly correlated
11 ZNF677 34 99.0 Weakly correlated
12 ZNF136 31 74.0 Highly correlated
13 ZNF337 27 43.0 Weakly correlated
14 ZNF534 24 19.6 Weakly correlated
15 ZNF680 22 28.9 Weakly correlated
16 ZNF793 21 99.0 Weakly correlated
17 ZNF425 20 94.0 Weakly correlated
18 ZNF75D 20 94.0 Weakly correlated
19 ZNF10 17 99.0 Weakly correlated
20 ZNF786 16 99.0 Weakly correlated
21 ZNF558 14 99.0 Weakly correlated
22 ZFP57 13 87.0 Weakly correlated
23 ZNF141 12 43.0 Weakly correlated
24 ZFP90 12 99.0 Weakly correlated
25 ZNF506 11 28.9 Weakly correlated
26 ZNF468 9 28.9 Weakly correlated
27 ZNF679 9 28.9 Weakly correlated
28 ZNF160 9 74.0 Highly correlated
29 ZNF101 8 43.0 Weakly correlated
30 ZNF766 8 43.0 Weakly correlated
31 ZNF479 8 6.4 Weakly correlated
32 ZNF250 7 99.0 Weakly correlated
33 ZNF287 6 99.0 Weakly correlated
34 ZNF18 5 160.0 Weakly correlated
35 ZNF723 5 15.2 Weakly correlated
36 ZNF140 5 99.0 Weakly correlated
37 ZNF735 5 28.9 Weakly correlated
38 ZNF585A 4 99.0 Weakly correlated
39 ZNF780A 4 43.0 Weakly correlated
40 ZNF93 4 8.6 Weakly correlated
41 ZNF17 4 69.0 Moderately correlated
42 ZNF394 4 99.0 Weakly correlated
43 ZNF133 3 99.0 Weakly correlated
44 ZNF573 3 94.0 Weakly correlated
45 ZNF28 3 28.9 Weakly correlated
46 ZNF597 3 94.0 Weakly correlated
47 ZNF197 3 99.0 Weakly correlated
48 ZNF251 3 94.0 Weakly correlated
49 ZNF528 3 43.0 Weakly correlated
50 ZNF202 3 160.0 Weakly correlated
51 ZNF705B 3 28.9 Weakly correlated
52 ZFP69B 2 99.0 Weakly correlated
53 ZNF320 2 28.9 Weakly correlated
54 ZNF675 2 8.6 Weakly correlated
55 ZNF701 2 28.9 Weakly correlated
56 ZNF589 2 28.9 Weakly correlated
57 ZNF549 2 87.0 Weakly correlated
58 ZNF157 2 99.0 Weakly correlated
59 ZKSCAN1 2 160.0 Weakly correlated
60 ZNF2 2 99.0 Weakly correlated
61 ZNF682 2 28.9 Weakly correlated
62 ZNF485 2 94.0 Weakly correlated
63 ZNF583 2 99.0 Weakly correlated
64 ZNF324 2 99.0 Weakly correlated
65 ZNF225 2 74.0 Highly correlated
66 ZNF354A 2 99.0 Weakly correlated
67 ZNF584 2 99.0 Weakly correlated
68 ZNF175 1 94.0 Weakly correlated
69 ZNF836 1 43.0 Weakly correlated
70 ZNF483 1 99.0 Weakly correlated
71 ZNF707 1 74.0 Highly correlated
72 ZNF829 1 99.0 Weakly correlated
73 ZFP37 1 99.0 Weakly correlated
74 ZIK1 1 87.0 Weakly correlated
75 ZNF257 1 0.0 Weakly correlated
76 ZNF33A 1 99.0 Weakly correlated
77 ZNF43 1 43.0 Weakly correlated
78 ZNF705A 1 28.9 Weakly correlated
79 ZNF846 1 74.0 Highly correlated
80 ZNF282 1 319.0 Weakly correlated
81 ZNF519 1 19.6 Weakly correlated
82 ZNF773 1 94.0 Weakly correlated
83 ZNF182 1 99.0 Weakly correlated
84 ZNF852 1 94.0 Weakly correlated
85 ZNF630 1 94.0 Weakly correlated
86 ZNF671 1 94.0 Weakly correlated
87 ZFP1 1 99.0 Weakly correlated
88 ZKSCAN2 1 180.0 Weakly correlated
89 ZNF417 1 28.9 Weakly correlated
90 ZNF268 1 94.0 Weakly correlated
91 ZNF560 1 43.0 Weakly correlated
92 ZNF789 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF248 99.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF486 8.6 Weakly correlated
5 ZNF793 99.0 Weakly correlated
6 ZNF84 99.0 Weakly correlated
7 ZNF92 28.9 Weakly correlated