ZRdb KZFP & Repeats
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LINE_L1P4_ORF2

  • Name
    L1P4_ORF2
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000326
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
atgacaggatcaaaacctcacatatcaatattaaccttgaatgtaaatggnctaaacgccccacttaaaaggcacagagtggcaagttggataaaaaaacaagacccanccgtctgctgtcttcaagagacccatctcacatgtaacgacacccataggctcaaagtaaagggntggagaaagatctatcacgcaaacggaaaacaaaaaagagcaggggtcgctattcttatatcagataaaacagactttaaaccaacaacagtaaaaaaggacaaagaagggcattacataatgataaagggttcaattcaacaagaagacttaactatcctaaatatatacgcacccaacattggagcacccagattcataaaacaagtncttctagacctacgaaaagacttagacagccacacaataatagtgggggacttcaacaccccactgacagcgttagacagatcatcgaggcagaaaactaacaaagaaattctggacttaaactcgacacttgaccaattggacctaatagacatctacagaatactccacccancaaccacagaatatacattcttctcatctgcacacggaacatactctaagatcgaccacatgctcggccataaagcaagtctcaataaattcaaaaaaatcgaaatcataccaaccatactctcggaccacagtgnaataaaaatagaaatcaataccaagaagatctctcaaaaccacacaattacatggaaattaaacaacttgctcctgaatgacttttgggtaaacaacgaaattaaggcagaaatcaaaaaattctttgaaatnaatgaaaacagagacacaacataccaaaatctctgggatgcagcnaaagcagtgttaagaggaaagtttatagcgctaaacgcctacatcaaaaagttagaaagatctcaaattaacaatctaacatcgcacctagaggaactagaaaaacaagaacaaaccaaccccaaagctagcagaagaaaagaaataactaaaatcagagcagaactgaacgaaattgagacncaaaaatccatacaaaggatcaacgaaaccaaaagttggttctttgaaaggataaacaagatcgatagaccgctagctagattaacaaagaaaaaaagagagaagatccaaataagcacaatcagaaatgacaaaggtgacattacaaccgatcccacagaaatacaaaagatcctcagagactattatgaacacctctatgcacacaaactagaaaatctagaggaaatggataaattcctggaaacacacaacctcccaagattgaaccaggaagaaattgaaaccctgaacagaccaatancgagttccgaaattgaatcagtaataaaaaacctaccaaccaaaaaaagccccggaccagatggattcacagccgaattctaccagacgtacaaagaagagctggtaccaatcctactgaaactattccaaaaaatcgaggaggagggactcctccctaactcattctacgaagccagcatcaccctgataccaaaacctggcaaagacacaacgaaaaaagaaaactncaggccaatatccctgatgaacatagacgcaaaaatcctcaacaaaatactagcaaaccgaatccagcagcacatcaaaaagttaattcaccacgatcaagtaggctttattcctgggatgcaaggttggttcaacatacgcaaatcaataaatgtgattcaccacataaacagaattaaaaacaaaaaccatatgatcatctcaatagacgcagaaaaagctttcgataaaatccaacatcccttcatgataaaaaccctcaacaaactaggcatcgaaggaacatacctcaaaataataagagccatctatgacaaacccacagccaacatcatactgaacgggcaaaagctggaagcattccccttgagaactggaacaagacaaggatgcccactctcaccactcctattcaacatagtactggaagtcctagccagagcaatcaggcaagagaaagaaataaaaggcatccaaataggaaaagaagaagtcaaactatctctcttcgctgacgatatgattctatacctagaaaaccctaaagactccgccaaaaggctcctagaactgataaacgacttcagtaaagtttcaggatacaaaatcaatgtacaaaaatcagtagcatttctatacaccaataacgttcaagctgagagccaaatcaagaacgcaatcccatttacaatagccacaaaaaaaataaaatacctaggaatacatctaaccaaggaggtgaaagatctctacaaggagaactacaaaacactgctgaaagaaatcanagatgacacaaacaaatggaaaaacattccatgctcatggattggaagaatcaatatcgttaaaatggccatactgcccaaagcaatctacagattcaacgctattcctatcaaactaccaacgtcatttttcacagaattagaaaaaactattctaaaattcatatggaaccaaaaaagagcccgaatagccaaagcaatcctaagcaaaaagaacaaagccggaggcatcacattacccgacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtacaaaaacagacacatagaccaatggaacagaatagagaacccagaaataaagccgcacacctacaaccatctgatcttcgacaaagtcgacaaaaataagcaatggggaaaggactccctattcaataaatggtgctgggataactggctagccatatgcagaagaatgaaactggacccctacctttcaccatatacaaaaattaactcaagatggattaaagacttaaatgtaagacctcaaactataaaaatcctagaagaaaacctaggaaataccnttctggacatcggccttggcaaagaatttatgactaagtcctcaaaagcaattgcaacaaaaacaaaaattgacaagtgggacctaattaaactaaagagcttctgcacagcaaaagaaactatcaacagagtaaacagacaacctacagaatgggagaaaatattcgcaaactatgcatccgacaaaggtctaatatccagaatctataaggaacttaaacaantcaacaagcaaaaaacaaataaccccattaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatacaagcggccaacaaacatatgaaaaaatgctcaacatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 346 99.0 Weakly correlated
2 ZNF92 101 28.9 Weakly correlated
3 ZNF84 89 99.0 Weakly correlated
4 ZIM3 57 87.0 Weakly correlated
5 ZNF317 32 99.0 Weakly correlated
6 ZNF394 28 99.0 Weakly correlated
7 ZNF248 27 99.0 Weakly correlated
8 ZNF680 27 28.9 Weakly correlated
9 ZNF486 25 8.6 Weakly correlated
10 ZNF766 24 43.0 Weakly correlated
11 ZNF324 22 99.0 Weakly correlated
12 ZNF679 22 28.9 Weakly correlated
13 ZNF723 21 15.2 Weakly correlated
14 ZFP37 19 99.0 Weakly correlated
15 ZNF2 17 99.0 Weakly correlated
16 ZNF793 16 99.0 Weakly correlated
17 ZNF101 15 43.0 Weakly correlated
18 ZNF8 14 99.0 Weakly correlated
19 ZNF263 13 180.0 Weakly correlated
20 ZNF471 13 94.0 Weakly correlated
21 ZNF705B 13 28.9 Weakly correlated
22 ZFP69B 11 99.0 Weakly correlated
23 ZNF558 11 99.0 Weakly correlated
24 ZNF610 11 28.9 Weakly correlated
25 ZKSCAN1 10 160.0 Weakly correlated
26 ZNF705D 10 28.9 Weakly correlated
27 ZNF792 10 94.0 Weakly correlated
28 ZNF175 9 94.0 Weakly correlated
29 ZNF18 9 160.0 Weakly correlated
30 ZNF585B 9 99.0 Weakly correlated
31 ZNF133 8 99.0 Weakly correlated
32 ZNF251 8 94.0 Weakly correlated
33 ZNF264 8 99.0 Weakly correlated
34 ZKSCAN8 7 160.0 Weakly correlated
35 ZNF140 7 99.0 Weakly correlated
36 ZNF479 7 6.4 Weakly correlated
37 ZNF547 7 74.0 Highly correlated
38 ZNF707 7 74.0 Highly correlated
39 ZNF75D 7 94.0 Weakly correlated
40 ZNF490 6 43.0 Weakly correlated
41 ZNF528 6 43.0 Weakly correlated
42 ZNF589 6 28.9 Weakly correlated
43 ZNF641 6 99.0 Weakly correlated
44 ZFP28 5 99.0 Weakly correlated
45 ZNF202 5 160.0 Weakly correlated
46 ZNF250 5 99.0 Weakly correlated
47 ZNF28 5 28.9 Weakly correlated
48 ZNF554 5 99.0 Weakly correlated
49 ZNF677 5 99.0 Weakly correlated
50 ZNF695 5 28.9 Weakly correlated
51 ZNF735 5 28.9 Weakly correlated
52 ZNF182 4 99.0 Weakly correlated
53 ZNF257 4 0.0 Weakly correlated
54 ZNF350 4 99.0 Weakly correlated
55 ZNF429 4 28.9 Weakly correlated
56 ZNF506 4 28.9 Weakly correlated
57 ZNF549 4 87.0 Weakly correlated
58 ZNF583 4 99.0 Weakly correlated
59 ZNF585A 4 99.0 Weakly correlated
60 ZFP57 3 87.0 Weakly correlated
61 ZFP90 3 99.0 Weakly correlated
62 ZNF100 3 28.9 Weakly correlated
63 ZNF160 3 74.0 Highly correlated
64 ZNF197 3 99.0 Weakly correlated
65 ZNF287 3 99.0 Weakly correlated
66 ZNF354A 3 99.0 Weakly correlated
67 ZNF445 3 99.0 Weakly correlated
68 ZNF454 3 99.0 Weakly correlated
69 ZNF480 3 43.0 Weakly correlated
70 ZNF485 3 94.0 Weakly correlated
71 ZNF519 3 19.6 Weakly correlated
72 ZNF534 3 19.6 Weakly correlated
73 ZNF560 3 43.0 Weakly correlated
74 ZNF597 3 94.0 Weakly correlated
75 ZNF701 3 28.9 Weakly correlated
76 ZNF778 3 74.0 Highly correlated
77 ZNF813 3 28.9 Weakly correlated
78 ZNF823 3 43.0 Weakly correlated
79 ZNF879 3 99.0 Weakly correlated
80 ZFP69 2 99.0 Weakly correlated
81 ZFP92 2 99.0 Weakly correlated
82 ZIK1 2 87.0 Weakly correlated
83 ZNF10 2 99.0 Weakly correlated
84 ZNF136 2 74.0 Highly correlated
85 ZNF141 2 43.0 Weakly correlated
86 ZNF169 2 94.0 Weakly correlated
87 ZNF223 2 43.0 Weakly correlated
88 ZNF225 2 74.0 Highly correlated
89 ZNF230 2 28.9 Weakly correlated
90 ZNF233 2 99.0 Weakly correlated
91 ZNF234 2 99.0 Weakly correlated
92 ZNF274 2 99.0 Weakly correlated
93 ZNF282 2 319.0 Weakly correlated
94 ZNF284 2 43.0 Weakly correlated
95 ZNF286A 2 160.0 Weakly correlated
96 ZNF320 2 28.9 Weakly correlated
97 ZNF331 2 94.0 Weakly correlated
98 ZNF337 2 43.0 Weakly correlated
99 ZNF33A 2 99.0 Weakly correlated
100 ZNF419 2 28.9 Weakly correlated
101 ZNF420 2 94.0 Weakly correlated
102 ZNF440 2 28.9 Weakly correlated
103 ZNF441 2 43.0 Weakly correlated
104 ZNF44 2 43.0 Weakly correlated
105 ZNF500 2 160.0 Weakly correlated
106 ZNF510 2 99.0 Weakly correlated
107 ZNF529 2 99.0 Weakly correlated
108 ZNF551 2 94.0 Weakly correlated
109 ZNF555 2 94.0 Weakly correlated
110 ZNF567 2 99.0 Weakly correlated
111 ZNF573 2 94.0 Weakly correlated
112 ZNF584 2 99.0 Weakly correlated
113 ZNF605 2 99.0 Weakly correlated
114 ZNF66 2 0.0 Weakly correlated
115 ZNF682 2 28.9 Weakly correlated
116 ZNF699 2 99.0 Weakly correlated
117 ZNF700 2 28.9 Weakly correlated
118 ZNF736 2 43.0 Weakly correlated
119 ZNF747 2 43.0 Weakly correlated
120 ZNF777 2 319.0 Weakly correlated
121 ZNF780A 2 43.0 Weakly correlated
122 ZNF786 2 99.0 Weakly correlated
123 ZNF81 2 99.0 Weakly correlated
124 ZNF878 2 43.0 Weakly correlated
125 ZNF880 2 28.9 Weakly correlated
126 ZFP30 1 99.0 Weakly correlated
127 ZKSCAN2 1 180.0 Weakly correlated
128 ZKSCAN3 1 99.0 Weakly correlated
129 ZKSCAN4 1 99.0 Weakly correlated
130 ZKSCAN5 1 160.0 Weakly correlated
131 ZNF114 1 28.9 Weakly correlated
132 ZNF124 1 43.0 Weakly correlated
133 ZNF12 1 99.0 Weakly correlated
134 ZNF132 1 94.0 Weakly correlated
135 ZNF135 1 94.0 Weakly correlated
136 ZNF14 1 69.0 Moderately correlated
137 ZNF154 1 94.0 Weakly correlated
138 ZNF177 1 94.0 Weakly correlated
139 ZNF180 1 99.0 Weakly correlated
140 ZNF195 1 28.9 Weakly correlated
141 ZNF205 1 180.0 Weakly correlated
142 ZNF20 1 43.0 Weakly correlated
143 ZNF211 1 94.0 Weakly correlated
144 ZNF213 1 180.0 Weakly correlated
145 ZNF215 1 99.0 Weakly correlated
146 ZNF221 1 74.0 Highly correlated
147 ZNF222 1 43.0 Weakly correlated
148 ZNF224 1 69.0 Moderately correlated
149 ZNF227 1 99.0 Weakly correlated
150 ZNF253 1 19.6 Weakly correlated
151 ZNF254 1 43.0 Weakly correlated
152 ZNF256 1 74.0 Highly correlated
153 ZNF25 1 99.0 Weakly correlated
154 ZNF267 1 43.0 Weakly correlated
155 ZNF268 1 94.0 Weakly correlated
156 ZNF285 1 94.0 Weakly correlated
157 ZNF302 1 43.0 Weakly correlated
158 ZNF304 1 99.0 Weakly correlated
159 ZNF324B 1 99.0 Weakly correlated
160 ZNF334 1 99.0 Weakly correlated
161 ZNF343 1 74.0 Highly correlated
162 ZNF347 1 43.0 Weakly correlated
163 ZNF354B 1 99.0 Weakly correlated
164 ZNF354C 1 99.0 Weakly correlated
165 ZNF416 1 43.0 Weakly correlated
166 ZNF417 1 28.9 Weakly correlated
167 ZNF418 1 43.0 Weakly correlated
168 ZNF426 1 87.0 Weakly correlated
169 ZNF430 1 19.6 Weakly correlated
170 ZNF432 1 99.0 Weakly correlated
171 ZNF433 1 43.0 Weakly correlated
172 ZNF439 1 8.6 Weakly correlated
173 ZNF442 1 43.0 Weakly correlated
174 ZNF443 1 19.6 Weakly correlated
175 ZNF446 1 94.0 Weakly correlated
176 ZNF45 1 99.0 Weakly correlated
177 ZNF461 1 99.0 Weakly correlated
178 ZNF468 1 28.9 Weakly correlated
179 ZNF473 1 43.0 Weakly correlated
180 ZNF483 1 99.0 Weakly correlated
181 ZNF487 1 28.9 Weakly correlated
182 ZNF496 1 99.0 Weakly correlated
183 ZNF514 1 94.0 Weakly correlated
184 ZNF525 1 19.6 Weakly correlated
185 ZNF527 1 99.0 Weakly correlated
186 ZNF530 1 28.9 Weakly correlated
187 ZNF543 1 99.0 Weakly correlated
188 ZNF544 1 0.0 Weakly correlated
189 ZNF546 1 99.0 Weakly correlated
190 ZNF548 1 94.0 Weakly correlated
191 ZNF550 1 94.0 Weakly correlated
192 ZNF552 1 28.9 Weakly correlated
193 ZNF556 1 94.0 Weakly correlated
194 ZNF557 1 15.2 Weakly correlated
195 ZNF559 1 74.0 Highly correlated
196 ZNF561 1 43.0 Weakly correlated
197 ZNF562 1 28.9 Weakly correlated
198 ZNF568 1 99.0 Weakly correlated
199 ZNF569 1 99.0 Weakly correlated
200 ZNF571 1 99.0 Weakly correlated
201 ZNF578 1 15.2 Weakly correlated
202 ZNF586 1 43.0 Weakly correlated
203 ZNF587B 1 8.6 Weakly correlated
204 ZNF587 1 28.9 Weakly correlated
205 ZNF607 1 43.0 Weakly correlated
206 ZNF611 1 19.6 Weakly correlated
207 ZNF615 1 99.0 Weakly correlated
208 ZNF624 1 99.0 Weakly correlated
209 ZNF626 1 0.0 Weakly correlated
210 ZNF649 1 28.9 Weakly correlated
211 ZNF658 1 99.0 Weakly correlated
212 ZNF667 1 99.0 Weakly correlated
213 ZNF669 1 43.0 Weakly correlated
214 ZNF674 1 99.0 Weakly correlated
215 ZNF675 1 8.6 Weakly correlated
216 ZNF689 1 99.0 Weakly correlated
217 ZNF705A 1 28.9 Weakly correlated
218 ZNF705E 1 0.0 Weakly correlated
219 ZNF705G 1 28.9 Weakly correlated
220 ZNF716 1 19.6 Weakly correlated
221 ZNF717 1 0.0 Weakly correlated
222 ZNF718 1 19.6 Weakly correlated
223 ZNF726 1 28.9 Weakly correlated
224 ZNF727 1 19.6 Weakly correlated
225 ZNF728 1 19.6 Weakly correlated
226 ZNF729 1 8.6 Weakly correlated
227 ZNF730 1 19.6 Weakly correlated
228 ZNF749 1 28.9 Weakly correlated
229 ZNF74 1 99.0 Weakly correlated
230 ZNF761 1 19.6 Weakly correlated
231 ZNF763 1 15.2 Weakly correlated
232 ZNF765 1 8.6 Weakly correlated
233 ZNF772 1 94.0 Weakly correlated
234 ZNF776 1 43.0 Weakly correlated
235 ZNF77 1 87.0 Weakly correlated
236 ZNF789 1 99.0 Weakly correlated
237 ZNF791 1 87.0 Weakly correlated
238 ZNF7 1 99.0 Weakly correlated
239 ZNF808 1 19.6 Weakly correlated
240 ZNF814 1 0.0 Weakly correlated
241 ZNF816 1 28.9 Weakly correlated
242 ZNF845 1 28.9 Weakly correlated
243 ZNF850 1 28.9 Weakly correlated
244 ZNF860 1 0.0 Weakly correlated
245 ZNF891 1 99.0 Weakly correlated
246 ZNF91 1 6.0 Weakly correlated
247 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF84 83 99.0 Weakly correlated
2 ZNF92 68 28.9 Weakly correlated
3 ZNF382 68 99.0 Weakly correlated
4 ZIM3 31 87.0 Weakly correlated
5 ZNF248 25 99.0 Weakly correlated
6 ZNF680 11 28.9 Weakly correlated
7 ZNF723 11 15.2 Weakly correlated
8 ZNF324 7 99.0 Weakly correlated
9 ZNF101 7 43.0 Weakly correlated
10 ZNF264 6 99.0 Weakly correlated
11 ZNF133 5 99.0 Weakly correlated
12 ZNF250 5 99.0 Weakly correlated
13 ZNF677 4 99.0 Weakly correlated
14 ZNF792 4 94.0 Weakly correlated
15 ZNF263 4 180.0 Weakly correlated
16 ZNF793 4 99.0 Weakly correlated
17 ZNF140 4 99.0 Weakly correlated
18 ZNF695 3 28.9 Weakly correlated
19 ZNF202 3 160.0 Weakly correlated
20 ZNF471 3 94.0 Weakly correlated
21 ZNF490 3 43.0 Weakly correlated
22 ZNF766 3 43.0 Weakly correlated
23 ZNF485 3 94.0 Weakly correlated
24 ZNF641 3 99.0 Weakly correlated
25 ZNF75D 3 94.0 Weakly correlated
26 ZNF44 2 43.0 Weakly correlated
27 ZNF10 2 99.0 Weakly correlated
28 ZNF705B 2 28.9 Weakly correlated
29 ZFP28 2 99.0 Weakly correlated
30 ZNF534 2 19.6 Weakly correlated
31 ZNF705D 2 28.9 Weakly correlated
32 ZNF610 2 28.9 Weakly correlated
33 ZNF251 2 94.0 Weakly correlated
34 ZFP90 2 99.0 Weakly correlated
35 ZNF777 1 319.0 Weakly correlated
36 ZNF317 1 99.0 Weakly correlated
37 ZNF585A 1 99.0 Weakly correlated
38 ZNF354A 1 99.0 Weakly correlated
39 ZNF786 1 99.0 Weakly correlated
40 ZNF287 1 99.0 Weakly correlated
41 ZIK1 1 87.0 Weakly correlated
42 ZNF468 1 28.9 Weakly correlated
43 ZNF81 1 99.0 Weakly correlated
44 ZFP69 1 99.0 Weakly correlated
45 ZNF282 1 319.0 Weakly correlated
46 ZNF221 1 74.0 Highly correlated
47 ZNF558 1 99.0 Weakly correlated
48 ZNF528 1 43.0 Weakly correlated
49 ZNF679 1 28.9 Weakly correlated
50 ZNF567 1 99.0 Weakly correlated
51 ZNF160 1 74.0 Highly correlated
52 ZNF486 1 8.6 Weakly correlated
53 ZNF440 1 28.9 Weakly correlated
54 ZNF257 1 0.0 Weakly correlated
55 ZNF585B 1 99.0 Weakly correlated
56 ZNF583 1 99.0 Weakly correlated
57 ZNF891 1 99.0 Weakly correlated
58 ZNF735 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF248 99.0 Weakly correlated
2 ZNF382 99.0 Weakly correlated
3 ZNF680 28.9 Weakly correlated
4 ZNF723 15.2 Weakly correlated
5 ZNF84 99.0 Weakly correlated
6 ZNF92 28.9 Weakly correlated