ZRdb KZFP & Repeats
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LINE_L1P4E_5END

  • Name
    L1P4E_5END
  • Repbase
    L1P4e_5end
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000325
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gagccaagatggccgactagacgcagccaggaagagcttctcccaccgagagagaccagaccatcaagnagaccggcacactccgagcagatcttcggaaagaaggcattgagagtggacggagggaggacgcagaccccgggctgaagggggaggaagctgggaaccctgcacggggttgccgagcaccaggactcgttcctggccccgagcggctcctggggaaggggtgagtnaaataggcgtggagtggcccactctcgccacggacctccggaatcctagctgcaggagaccccacgacccccacggacatttgagctggcagggagaactgcccggagagttggcagagacaggactccagcctgcgcggagcccagagggtttggcgcgggaacggctgcagtggagcacggccangggcgcccatcccccaaggctcgccatactcctctaggtggctttggcctttgttggctgccggacctggacagagcagggctgtcttgcccgtgggactggggccagtctgatctgagcgcccccctgtctgccggcctctcccagggtccctgcctggccgcacccgcttgcagcgcagcctcagntgcccagccggggcgcttnccagcggccaccgccatagctctttcgccggcagaccctcgccnncccgtcggagngcttttgccggtgcccacgcacccaccgccgccctgccggcgcgcactcgcccgcagcctccccgccgccctgcggtgcgcattgcccacggcccccactgccccgctggcgcaatgcntncacacggcgncccccgccgccccgccggagcgcttttgccggcancccccatcggagtgttgttgccagcggactgggaacacnctcggcccctccagcgcagcaggtgcttaacctcgaggggccagagaacaaagccgcgggcctggtcccagccccccagggttagagcacgcagcccaggagtgctgagctgagccttggccccctgaaancatccagaaacgaagccagtcgactaaacccaacttataccacagtcaaaccctcaagggcatcaaagaatataaaagcaaaaagccccatccaaaggacagcaacttcaaagattaaaggaacatcagcccacacagatgagaaagaaccagcgcaagaactctggcaactctaaaagccagagtgtcttcttacctccaaacgaccgcactagctccccagcaatggttcttaaccagactgaaatggctgaaatgacagacatagaattcagaatctggatggcaangaagntcatcgagatncaggagaaggttgaaacccaatccaaggaaancagtaaaacgatncaagagctgaaagatgac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 18 99.0 Weakly correlated
2 ZNF263 9 180.0 Weakly correlated
3 ZNF705B 5 28.9 Weakly correlated
4 ZNF274 5 99.0 Weakly correlated
5 ZNF433 4 43.0 Weakly correlated
6 ZNF534 3 19.6 Weakly correlated
7 ZNF679 3 28.9 Weakly correlated
8 ZNF75D 3 94.0 Weakly correlated
9 ZNF320 3 28.9 Weakly correlated
10 ZNF490 3 43.0 Weakly correlated
11 ZNF486 2 8.6 Weakly correlated
12 ZIM3 2 87.0 Weakly correlated
13 ZNF705D 2 28.9 Weakly correlated
14 ZNF317 2 99.0 Weakly correlated
15 ZNF28 2 28.9 Weakly correlated
16 ZNF248 2 99.0 Weakly correlated
17 ZNF136 2 74.0 Highly correlated
18 ZNF793 2 99.0 Weakly correlated
19 ZNF735 1 28.9 Weakly correlated
20 ZNF597 1 94.0 Weakly correlated
21 ZNF471 1 94.0 Weakly correlated
22 ZNF92 1 28.9 Weakly correlated
23 ZNF506 1 28.9 Weakly correlated
24 ZNF483 1 99.0 Weakly correlated
25 ZNF480 1 43.0 Weakly correlated
26 ZNF479 1 6.4 Weakly correlated
27 ZNF429 1 28.9 Weakly correlated
28 ZNF334 1 99.0 Weakly correlated
29 ZNF160 1 74.0 Highly correlated
30 ZNF114 1 28.9 Weakly correlated
31 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF136 2 74.0 Highly correlated
2 ZNF248 2 99.0 Weakly correlated
3 ZIM3 2 87.0 Weakly correlated
4 ZNF433 2 43.0 Weakly correlated
5 ZNF490 2 43.0 Weakly correlated
6 ZNF263 2 180.0 Weakly correlated
7 ZNF534 2 19.6 Weakly correlated
8 ZNF92 1 28.9 Weakly correlated
9 ZNF735 1 28.9 Weakly correlated
10 ZNF28 1 28.9 Weakly correlated
11 ZNF480 1 43.0 Weakly correlated
12 ZNF793 1 99.0 Weakly correlated
13 ZNF506 1 28.9 Weakly correlated
14 ZNF160 1 74.0 Highly correlated
15 ZNF471 1 94.0 Weakly correlated
16 ZNF317 1 99.0 Weakly correlated
17 ZNF75D 1 94.0 Weakly correlated
18 ZNF382 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats