ZRdb KZFP & Repeats
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LINE_L1P4D_5END

  • Name
    L1P4D_5END
  • Repbase
    L1P4d_5end
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000324
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gacaagatggccgactagacgcagccgggaagcgcctctcccaccgagaggaaccaaaatatcgagtaaaccatcacacttcgaacagatcttttgagagaaaacactgaaagtcgatagagaggcgacgcagacaccgnggttgaagagggaggaagctgggaagcctgcncggagtcgccgagcgccaggaccggctcccggncctgaacaggtcctaaggaaggggtgagtgaaggaactccggggcaccacactcccgccgcggacctctgggatcctagctacaggagatcccacgacccccatagacatttgaactggcagggggagctgcccggagagcaggcagaggcagagctcgaacctgcgcggagcccagaaggtttcgcgcgggggcagctgcagcaaaacgcgaccataggcgcccatcccccaaggctctccatcttgctctgagcggctgcagcccctgctgnctgccgggccgggagagagcagggctgcctttcccgcgggaccggggcgcatctgatccgcatgcccccttgcccgccggcccctcccaaggcccctgcctggccgctcccgcaggagggtgcncacagcacagcctccactgccccgcctgagtgttttgccggcggcctgggagcagttcggcccccccagcacagccggtgctcgaccccgaggggccagaggacaaagccgcgggcccggtcccaaccccccagggttcgagcacaccgcccaggggtatcgagctgagatctgtggcctgagctcgagcgggggaggagcccccactctcagaacacngagaagagtgnggcgcgggttcgtgtgccggcgcgggagctgggcgtccctccctccgcaagaccggtccgggaagggtgtggcctgntngccagccgcagcttctgcccgagggagccccgcggcccggaacacctggaacggcccagcgatctgggcgcagaaggcttgggacaagnctagctggtcgggcctgctcccggggcagacgccggagggagacccggtcgggggagcgcgagctgggcggnccccacagccgtctgctgggcnaaaaaccccgggccgcgggcgccacaccagctgcacacccacggcaccaccgccctgcccggggatcctccgcccttgacccactgcatcaccagaccacccgcagacataccccacaacccgctctgactctgccaagcncagaggaccagcgggtccccggggagttgcgggtctcctggtgacctaaccttcggctcgggccgcccctaagggaggggggagcgcagcccgccagggccccccttggggctaaggaaacgcgggcgcggcgccagtgattggagggggctccnccaaggcccgggaacggacttggngagggggtcatctctcgcccccctccatccctccccccagagcactgctgcgnacgcgctgaaatacaaaagaggcgcgcggctgagtaagagcctatctgccggcccttactcttaagcgccatctactggaccgcagcctgaattacaccaccaaaaanaaattnctncaacangcagcgtctgagaaagccantgcangaaactatctacaaccaaggaactcatacagagccttggccctctgaaagcacccagaaacgaagccaancgactatacacaacatacactacagtcacaccctcaagggaaaaaagaatataaaaacaaaaagccccatccaaacganagcaaattcaaaaanataaagaaanancagcctncccagatgagaaggaaccagnanaanaactctggcaatacgaaaaancagagtgtttcgncacccccaaaggatcacactagctctccagcaatggatccnaaccaaaatgaaatctctgaaatgncagataaagaattcagaatatggattgtaaggaagctcaangagatncaagagaaagttgaaanccaacacaaagaaaccagaaaaacgatccaggatntgaaagacgac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 17 99.0 Weakly correlated
2 ZNF766 11 43.0 Weakly correlated
3 ZNF263 11 180.0 Weakly correlated
4 ZNF2 8 99.0 Weakly correlated
5 ZNF793 4 99.0 Weakly correlated
6 ZNF534 4 19.6 Weakly correlated
7 ZNF18 4 160.0 Weakly correlated
8 ZNF222 4 43.0 Weakly correlated
9 ZNF230 4 28.9 Weakly correlated
10 ZFP37 3 99.0 Weakly correlated
11 ZNF317 3 99.0 Weakly correlated
12 ZNF274 3 99.0 Weakly correlated
13 ZNF679 2 28.9 Weakly correlated
14 ZNF490 2 43.0 Weakly correlated
15 ZNF486 2 8.6 Weakly correlated
16 ZNF506 2 28.9 Weakly correlated
17 ZNF547 2 74.0 Highly correlated
18 ZNF701 2 28.9 Weakly correlated
19 ZNF92 2 28.9 Weakly correlated
20 ZNF705D 1 28.9 Weakly correlated
21 ZNF705B 1 28.9 Weakly correlated
22 ZNF723 1 15.2 Weakly correlated
23 ZNF93 1 8.6 Weakly correlated
24 ZNF610 1 28.9 Weakly correlated
25 ZNF597 1 94.0 Weakly correlated
26 ZNF589 1 28.9 Weakly correlated
27 ZIM3 1 87.0 Weakly correlated
28 ZKSCAN1 1 160.0 Weakly correlated
29 ZFP30 1 99.0 Weakly correlated
30 ZNF257 1 0.0 Weakly correlated
31 ZNF479 1 6.4 Weakly correlated
32 ZNF440 1 28.9 Weakly correlated
33 ZNF429 1 28.9 Weakly correlated
34 ZNF425 1 94.0 Weakly correlated
35 ZNF394 1 99.0 Weakly correlated
36 ZNF175 1 94.0 Weakly correlated
37 ZNF337 1 43.0 Weakly correlated
38 ZNF334 1 99.0 Weakly correlated
39 ZNF324 1 99.0 Weakly correlated
40 ZNF197 1 99.0 Weakly correlated
41 ZNF223 1 43.0 Weakly correlated
42 ZNF28 1 28.9 Weakly correlated
43 ZNF284 1 43.0 Weakly correlated
44 ZNF248 1 99.0 Weakly correlated
45 ZNF251 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 6 99.0 Weakly correlated
2 ZNF263 4 180.0 Weakly correlated
3 ZNF2 3 99.0 Weakly correlated
4 ZNF534 3 19.6 Weakly correlated
5 ZNF490 2 43.0 Weakly correlated
6 ZNF317 2 99.0 Weakly correlated
7 ZNF197 1 99.0 Weakly correlated
8 ZNF506 1 28.9 Weakly correlated
9 ZNF486 1 8.6 Weakly correlated
10 ZNF479 1 6.4 Weakly correlated
11 ZIM3 1 87.0 Weakly correlated
12 ZNF92 1 28.9 Weakly correlated
13 ZNF257 1 0.0 Weakly correlated
14 ZNF230 1 28.9 Weakly correlated
15 ZNF18 1 160.0 Weakly correlated
16 ZNF337 1 43.0 Weakly correlated
17 ZNF425 1 94.0 Weakly correlated
18 ZNF175 1 94.0 Weakly correlated
19 ZNF793 1 99.0 Weakly correlated
20 ZNF93 1 8.6 Weakly correlated
21 ZNF248 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats