ZRdb KZFP & Repeats
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LINE_L1P4C_5END

  • Name
    L1P4C_5END
  • Repbase
    L1P4c_5end
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000323
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gggttcaagatggctgactagaagcagctagtgtgcgccgctctcacggagaggaaacaaagtggcgagtaaatactgactcttcaagtggatcgtctaagaaaccacgtcgggatccatcaagggagcgaggggacacacggagaacagagaagagcgaagctgggcagccgcccacccgggaccggcgcggagccaggagaagctccctaacacggggaaagggtgagtgagtgagagcccccgggggatccacacttcccacagggacctgtgcaatcctgggaacgggagaacccccctgacccccncgggcctctagaccgatacagagagccgcccggagtttttgcggaggcancgctcaagnccacggggagccccacaggccttggaccccngagcagcccggcgccagctgccatagccccaatagaggccgcagtcgcggtgccggggagcggtcagactgctccactcctcctcgccagacaaggctcggcnccggcttccagcacagcggccccgcccctgcctgaactctgcgggcgggcacagctccgtgttccccgggaagcacccggacggcggaccgggcgactccacccacccccgctgctcctagccgggcgggncncgccggctngggcttccagcacagcggccccgcctctgcctgaactctgcgggcgggcgcagctccgtgttcccccgggaagcacccggatggcggatcgggtgactccacccacccccgctgctcctagccaggcgggactcgccggcttgggcttccagcacagcggccccgcccctgcctgaactctgcgggcgggcacagctccgtgttcccccgggaagcacccggacggcggatcgggcgactccacccacccccgctgctcctagccgggcgggactcgccggcttgggcggcgcccaagcaggggggagcccccactctcagaacactgagaggggtgagacgcccgggttcgtgggccggcgggggagcggggcgtgcctccctccgcagggccggtccgggaagggtacggcctgtctgccagccgcggcccctgcctgagggagccccgcggcccagaacacctaacaaaggaaacgcgggcgcggcgccagtgatcggagggggctcctccaaggcccaggagcggacctggtgagggggtcatctctctccccaccccaccacagagcactactgcgaactgcgccgaaatacaaaagagccacgtggctgagtaagagcctatctgccggccancactcttaagcgccacctactggatcgcagcccaaattacaacaccaaaaatattttgccagtatacagcgcctgtgaaacctaaggcaaaaatccagccacaaataaagatcctgtacagagccttggccctctgaaagcacccagaaacgaagccaactgactatactcaacttacaccacagttaaaggaacaccagccctcncagatgagaaagaatcagcgcaagaactctggcaactcaaaaagccagagtgtccccttacctccaaacgaacacactagtcccccagcaat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 2 180.0 Weakly correlated
2 ZNF547 2 74.0 Highly correlated
3 ZNF75D 2 94.0 Weakly correlated
4 ZNF251 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF75D 1 94.0 Weakly correlated
2 ZNF263 1 180.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats