ZRdb KZFP & Repeats
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LINE_L1P4B_5END

  • Name
    L1P4B_5END
  • Repbase
    L1P4b_5end
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000322
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
agaagcgccaagatggctgactagaagcagctagtgtgcgccgctctcacggagaggagacagagtggcgagtaaacactagctcttcaactggatcatccaggaggncacgttgggattcatcaaggaagcaacggcgacccacggagagcagagaggagcgaggcaggacagccgcccacccgggantggcgcggagccagggaggctccccaccgcggggaaanggtgagtgagcgagagcccccggggacccacacttctgccacggacctttgcaatcctgggcacaggagatcccccctgaccccccgggcctccagaccgacacggagagctgcgtggagtctgggcagagccgccgctcaggcccacgtggagccccangggccttggatccctgagcaccccggcgccagctgccgtagctccgccaacgagggaggccaggctctctcgcacgcccccaggataggggccgcatccacggtgctgaggagcggacggactgcaggcctcgcctccgctgcacctcgccgggcaaggcccactggcctgggaccccagcgcagccaccccacccccgcctgagcactcnggccggtngcagctctgcatttctctgggacggagctcccagaggtaaccgacaggcccgccgcnnttgccgctgccgcggcccccgcccctgctgccctcaggctngggagggaggaagagcaaagacgcctcaagaactgtcgcgggcctccagcacgncgcagctgccntacggaaaagcggccagactgttttccacgcgggtccctgcccctgctactcctcactgggcagggcctcccgacctgggcccccagcgcagccgccccgcccccgcctgancacttcggtcggtggcggctctgcgtttctctggggnggagntcccagagacaaccgacaggccctctgccattgccgctgcagcggtacccgcccttgctgccctcgggctggggagggaacaaagagcctgatcgctttcgcacgcctccagcacgccgcagccgccntacggagaggaggccagnctntcttccctgtgagcccccgacncccctgctcttcaccaggcagggcctcccggcttgggcccgcagcgcagccgccccacccccggctgancattcccatcggcagcggctctgcgtttctctggggtggagctcccagaggcaactgacagcccctctgccactgccgccgcngcggtacctgcccttgctgcccccgggctggggaaggaacaaagagcctgagtgctttactcgcacctccagcacgccgcagccgccctacggagaggaggccagnctgtcttccccgtgagcccccgccccccctgctcttcaccaggcagggccccctagcttgggcccgcagcgcagccgccccaccccggctgatcattccgattggcagcggctctgcgtttctctggggtggagctcccagagacaantgaaaggccctctgccactgccactgcaaggtccccgcccctgctgcccccaagctggggagggaacaaaaagcctgagctcgccccagggctgcggtgcgcagcccgggagtgccaagccgagatctgcggccagcactcgagcgggagaggagcccacactctcagagcactgagaggggtgagtcgcgtgggctcatgggctgccgcgggagcggggcgtgcctccctccacagggccggcccggaaaaggtgtggcctatctccctgccgcggcctct
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 8 99.0 Weakly correlated
2 ZNF705D 4 28.9 Weakly correlated
3 ZNF490 3 43.0 Weakly correlated
4 ZNF534 3 19.6 Weakly correlated
5 ZNF793 3 99.0 Weakly correlated
6 ZNF18 2 160.0 Weakly correlated
7 ZNF160 2 74.0 Highly correlated
8 ZNF75D 2 94.0 Weakly correlated
9 ZNF114 2 28.9 Weakly correlated
10 ZNF257 2 0.0 Weakly correlated
11 ZNF705B 2 28.9 Weakly correlated
12 ZNF610 2 28.9 Weakly correlated
13 ZNF2 2 99.0 Weakly correlated
14 ZFP37 2 99.0 Weakly correlated
15 ZNF479 2 6.4 Weakly correlated
16 ZNF394 1 99.0 Weakly correlated
17 ZNF589 1 28.9 Weakly correlated
18 ZNF701 1 28.9 Weakly correlated
19 ZNF84 1 99.0 Weakly correlated
20 ZNF92 1 28.9 Weakly correlated
21 ZNF585A 1 99.0 Weakly correlated
22 ZNF560 1 43.0 Weakly correlated
23 ZNF28 1 28.9 Weakly correlated
24 ZNF263 1 180.0 Weakly correlated
25 ZNF251 1 94.0 Weakly correlated
26 ZNF248 1 99.0 Weakly correlated
27 ZNF224 1 69.0 Moderately correlated
28 ZKSCAN8 1 160.0 Weakly correlated
29 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF490 3 43.0 Weakly correlated
2 ZNF793 3 99.0 Weakly correlated
3 ZNF534 3 19.6 Weakly correlated
4 ZNF160 2 74.0 Highly correlated
5 ZNF479 1 6.4 Weakly correlated
6 ZNF84 1 99.0 Weakly correlated
7 ZNF382 1 99.0 Weakly correlated
8 ZNF92 1 28.9 Weakly correlated
9 ZNF2 1 99.0 Weakly correlated
10 ZNF248 1 99.0 Weakly correlated
11 ZNF28 1 28.9 Weakly correlated
12 ZNF701 1 28.9 Weakly correlated
13 ZNF18 1 160.0 Weakly correlated
14 ZNF585A 1 99.0 Weakly correlated
15 ZNF75D 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats