ZRdb KZFP & Repeats
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LINE_L1P4A_5END

  • Name
    L1P4A_5END
  • Repbase
    L1P4a_5end
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000321
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gagagggacaagatggccgactagacgcagccaggaagcgccgctcccaccgagagagaccaaantatcgagtaaaccaacataatttgagcagatcttcggagagaaaacgccgagagtggatgagagaggcgacgcagacgccgaggctgaagagggaggaagctgggaaccctgcgcggggtacccgaacgctagggctagttcccggccccgaacggctcctggggaaggggtgagtgaagggactgagggacggcccactctcgccgcggacctctgggatcctagctacaggggaccccacgtcccccatggacgtntgagctggcagggggatctncccggagagtaggcagagacagggcttcagccggcacggagcccgggagcttttgtgcgcggggcagctccggcggagcgcggccataggcgcccatcccccagggctccccatctccctccgagaggctctggccccagctgaccgccgggccaggagagagcggggccggcttccccgcgggactggggcacgtctgttctgcaggccctcctgcccgccagcccctcccagggcccctgcctggccgccccgcaggagcgtgtgcacagcgcagcctccgctgcccagcctgggtgctttgctccacctgagtactttcccggcggcctgggagcacttcggatcccccagcgcagccggaacccgaccccgagggtccggaggaggagccgcggcaggtcccggtgccccagggctgcggcgcgcagctcgggagtgccgagccgagatctgtggccggcactcgagcgggggaggagcccncactctcagagcactgagaggggtgagacgcgcgggttcgtgggccggcgcgggagcggggcgtgcctccctccgcagggccggtccggaaagggtgtggcctatctccctgccgcggcctctgcccgagggagccccgcggcccggaacacctaacaaaagaaacgcgggcgcggcgccagtgatcggagggggctcccccaaggcccaggagcggacctggtgagggggtcatctctctccccnccgcaccgcagagcacggctgcgaacgcgaggaaatacaaaagagccgcgcggctgagtaagagcctatctaccggccattactcttaagcgccatctactggatcgcagcccaaactacaacaccaaaaatattctgctaatatacacccctgtgaaaccaagggcaagaattcagccacaaataaagaccctgtacagagccttggccctctgaaagcatccagaaacgaagccaactgactatactcaacttacaccacagttaaaggaacaccagccctcccagatgagaaagaatcagcgcaagaactctggcaattcaaaaagccagagtgtccccttacctccaaacgancncactagctccccagcaatggttcttaaccagactgaaatgnctgaaatgacagacatagaattcagaatctggatggcaaggaagctcatcgagattcaggagaaagttgaaacccaatccaaggaatccaaggaatccagtaaaacgatccaagagctgaaagacgaaatagccattttaagaaagaaccaaactgaacttctggaactgaaaaattcactacaagaatttcataatacaatcggaagcattaacagcagaatagaccaagctgaggaaagaatctcagagctcgaagaccggttcttcgaatcaactcagtcagacaaaaataaagaaaaaagaattttaaaaaatgaacaaaacctccgagaaatatgggattatgtaaagagaccaaatctacgactcattggcattcctgagagagaaggagagagagtaagcaacttggaaaacatatttgaggatatagtccacgaaaatttccccaatctcgctagagaggtcgacatgcaaattcaagaaatncagagaaccccngcgagatactatacaagacgaccatccccaaggcacatagtcatcagattcnccaaggtcaacgcgaaagaaaaaatcttaaaggcagctagagagaagggtcaggtcacntacaaagggaaccccatcaggctagcagcggacctctcagcagaaaccttacaagccagaagagattgggggcctattttcagcatccttaaagaaaagaaattccaaccaagaatttcatatcccgccaaactaagcttcataagcgaaggagaaataaaatccttctcagacaagcaaacgctaagggaattcgttncnactagaccagccttacaagaggtccttaagggagtgctaaacatggaancgaaagaacgacacctgctaccacaaaaacacacttaagcacatagcccacagacactataaagcaactacacaatcaagtctacanaacaaccagctaacaacacgatgacaggatcaaaatctcacatatcaatactaaccttgaatgtaaatggnctaaacgccccacttaaaagacacagagtggcaagctggataaaaagacaagacccaaccgtctgctgtcttcaagagacccatctcacatgtaacgac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 84 99.0 Weakly correlated
2 ZNF490 31 43.0 Weakly correlated
3 ZNF263 30 180.0 Weakly correlated
4 ZNF2 16 99.0 Weakly correlated
5 ZNF680 15 28.9 Weakly correlated
6 ZNF766 15 43.0 Weakly correlated
7 ZNF337 15 43.0 Weakly correlated
8 ZNF394 13 99.0 Weakly correlated
9 ZNF317 13 99.0 Weakly correlated
10 ZNF679 13 28.9 Weakly correlated
11 ZNF534 12 19.6 Weakly correlated
12 ZIM3 10 87.0 Weakly correlated
13 ZNF547 10 74.0 Highly correlated
14 ZNF230 10 28.9 Weakly correlated
15 ZNF793 8 99.0 Weakly correlated
16 ZNF479 8 6.4 Weakly correlated
17 ZNF324 6 99.0 Weakly correlated
18 ZNF92 6 28.9 Weakly correlated
19 ZNF101 6 43.0 Weakly correlated
20 ZNF705B 6 28.9 Weakly correlated
21 ZFP37 5 99.0 Weakly correlated
22 ZNF695 5 28.9 Weakly correlated
23 ZNF723 5 15.2 Weakly correlated
24 ZNF223 5 43.0 Weakly correlated
25 ZNF610 5 28.9 Weakly correlated
26 ZNF84 5 99.0 Weakly correlated
27 ZFP69B 4 99.0 Weakly correlated
28 ZNF585A 4 99.0 Weakly correlated
29 ZNF589 4 28.9 Weakly correlated
30 ZNF558 4 99.0 Weakly correlated
31 ZNF705D 4 28.9 Weakly correlated
32 ZNF222 4 43.0 Weakly correlated
33 ZNF160 4 74.0 Highly correlated
34 ZNF175 4 94.0 Weakly correlated
35 ZNF584 3 99.0 Weakly correlated
36 ZNF792 3 94.0 Weakly correlated
37 ZNF182 3 99.0 Weakly correlated
38 ZNF114 3 28.9 Weakly correlated
39 ZNF264 3 99.0 Weakly correlated
40 ZNF136 3 74.0 Highly correlated
41 ZNF251 3 94.0 Weakly correlated
42 ZNF248 3 99.0 Weakly correlated
43 ZNF18 3 160.0 Weakly correlated
44 ZNF786 2 99.0 Weakly correlated
45 ZNF641 2 99.0 Weakly correlated
46 ZNF8 2 99.0 Weakly correlated
47 ZNF519 2 19.6 Weakly correlated
48 ZNF510 2 99.0 Weakly correlated
49 ZNF506 2 28.9 Weakly correlated
50 RBAK 2 99.0 Weakly correlated
51 ZNF273 2 28.9 Weakly correlated
52 ZNF471 2 94.0 Weakly correlated
53 ZNF441 2 43.0 Weakly correlated
54 ZNF197 2 99.0 Weakly correlated
55 ZKSCAN5 2 160.0 Weakly correlated
56 ZNF429 2 28.9 Weakly correlated
57 ZNF133 2 99.0 Weakly correlated
58 ZKSCAN8 1 160.0 Weakly correlated
59 ZNF211 1 94.0 Weakly correlated
60 ZNF202 1 160.0 Weakly correlated
61 ZNF701 1 28.9 Weakly correlated
62 ZNF141 1 43.0 Weakly correlated
63 ZNF140 1 99.0 Weakly correlated
64 ZNF12 1 99.0 Weakly correlated
65 ZNF627 1 74.0 Highly correlated
66 ZKSCAN1 1 160.0 Weakly correlated
67 ZFP90 1 99.0 Weakly correlated
68 ZNF879 1 99.0 Weakly correlated
69 ZFP57 1 87.0 Weakly correlated
70 PRDM9 1 0.0 Weakly correlated
71 ZNF677 1 99.0 Weakly correlated
72 ZNF486 1 8.6 Weakly correlated
73 ZNF274 1 99.0 Weakly correlated
74 ZNF287 1 99.0 Weakly correlated
75 ZNF585B 1 99.0 Weakly correlated
76 ZNF354C 1 99.0 Weakly correlated
77 ZNF425 1 94.0 Weakly correlated
78 ZNF577 1 94.0 Weakly correlated
79 ZNF567 1 99.0 Weakly correlated
80 ZNF560 1 43.0 Weakly correlated
81 ZNF557 1 15.2 Weakly correlated
82 ZNF549 1 87.0 Weakly correlated
83 ZNF433 1 43.0 Weakly correlated
84 ZNF528 1 43.0 Weakly correlated
85 ZNF483 1 99.0 Weakly correlated
86 ZNF485 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF490 30 43.0 Weakly correlated
2 ZNF382 15 99.0 Weakly correlated
3 ZNF337 14 43.0 Weakly correlated
4 ZNF534 9 19.6 Weakly correlated
5 ZNF263 8 180.0 Weakly correlated
6 ZIM3 5 87.0 Weakly correlated
7 ZNF680 5 28.9 Weakly correlated
8 ZNF317 5 99.0 Weakly correlated
9 ZNF2 5 99.0 Weakly correlated
10 ZNF479 5 6.4 Weakly correlated
11 ZNF84 4 99.0 Weakly correlated
12 ZNF160 3 74.0 Highly correlated
13 ZNF695 3 28.9 Weakly correlated
14 ZNF101 3 43.0 Weakly correlated
15 ZNF230 3 28.9 Weakly correlated
16 ZNF92 3 28.9 Weakly correlated
17 ZNF723 2 15.2 Weakly correlated
18 ZNF136 2 74.0 Highly correlated
19 ZNF610 2 28.9 Weakly correlated
20 ZNF793 2 99.0 Weakly correlated
21 ZNF248 2 99.0 Weakly correlated
22 ZNF264 2 99.0 Weakly correlated
23 ZKSCAN5 2 160.0 Weakly correlated
24 ZNF471 1 94.0 Weakly correlated
25 ZNF679 1 28.9 Weakly correlated
26 ZNF641 1 99.0 Weakly correlated
27 ZNF558 1 99.0 Weakly correlated
28 ZNF792 1 94.0 Weakly correlated
29 ZNF677 1 99.0 Weakly correlated
30 PRDM9 1 0.0 Weakly correlated
31 ZNF549 1 87.0 Weakly correlated
32 ZNF133 1 99.0 Weakly correlated
33 ZNF766 1 43.0 Weakly correlated
34 ZNF705B 1 28.9 Weakly correlated
35 ZNF589 1 28.9 Weakly correlated
36 ZNF141 1 43.0 Weakly correlated
37 ZNF705D 1 28.9 Weakly correlated
38 ZNF585A 1 99.0 Weakly correlated
39 ZNF394 1 99.0 Weakly correlated
40 ZNF506 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF337 43.0 Weakly correlated
3 ZNF490 43.0 Weakly correlated