ZRdb KZFP & Repeats
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LINE_L1P3_5END

  • Name
    L1P3_5END
  • Repbase
    L1PA7_5
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggtggctggcaagatggccgaataggaacagctccggtctgcagctcccagcgagatcaacgcagaaggcgggtgatttctgcatttccaactgaggtacccggctcatctcattgggactggttagacagtgggtgcagcccacggagggcgagccgaagcagggtggggcgtcgcctcacccgggaagcgcaaggggtcggggaactccctcccctagccaagggaagccgtgagggactgtgccgtgaggaacggtgcactccggcccagatactacgcttttcccacggtcttcgcaacccgcagaccaggagattccctcgggtgcctacgccaccagggccctgggtttcaagcacaaaactgggcggccgtttgggcagacaccgagctagctgcaggagttttttttttncataccccagtggcgcctggaacgccagcgagacagaaccgttcactcccctggaaagggggctgaagccagggagccaagtggtctagctcagcggatcccacccccacggagcccagcaagctaagatccactggcttgaaattctcgctgccagcacagcagtctgaagtcgacctgggacgctcgagcttggtggggggaggggcgtccgccattactgaggcttgagtaggcggttttcccctcacagtgtaaacaaagccgccgggaagttcgaactgggcggagcccaccgcagctcggcaaagccgctgtagccagactgcctctctagattcctcctctctgggcagggcatctctgaaagaaaggcagcagccccagtcaggggcttatagataaaactcccatctccctgggacagagcacctgggggaaggggcggctgtgggcgcagcttcagcagacttaaacgttcctgcctgccggctctgaagagagcagcggatctcccagcacagcgctcgagctctgctaagggacagactgcctcctcaagtgggtccctgacccccgtgcctcctgactgggagacacctcccagcaggggtcgacagacacctcatacaggagagctccggctggcatctggcgggtgcccctctgggacgaagcttccagaggaaggaacaggcagcaatctttgctgttctgcagcctccgctggtgatacccaggcaaacagggtctggagtggacctccagcaaactccagcagacctgcagcagaggggcctgactgttagaaggaaaactaacaaacagaaaggaatagcatcaacatcaacaaaaaggacgtccacgcaaaaaccccatccgaaggtcaccaacatcaaagaccaaaggtagataaatccacgaagatgaggaaaaaccagcgcaaaaaggctgaaaattccaaaaaccagaacgcctcttctcctccaaaggatcacaactcctcgccagcaagggaacaaaactggacggagaatgagtttgacgaattgacagaagtaggcttcagaaggtgggtaataacaaactcctccgagctaaaggagcatgttctaacccaatgcaaggaagctaagaaccttgaaaaaaggttagaggaattgctaactagaataaccagtttagagaagaacataaatgacctgatggagctgaaaaacacagcacgagaacttcgtgaagcatacacaagtatcaatagccgaatcgatcaagcggaagaaaggatatcagagattgaagatcaact
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 226 99.0 Weakly correlated
2 ZNF17 109 69.0 Moderately correlated
3 ZNF479 102 6.4 Weakly correlated
4 ZNF486 92 8.6 Weakly correlated
5 ZNF248 89 99.0 Weakly correlated
6 ZNF490 88 43.0 Weakly correlated
7 ZNF84 86 99.0 Weakly correlated
8 ZNF141 66 43.0 Weakly correlated
9 ZNF92 64 28.9 Weakly correlated
10 ZNF317 63 99.0 Weakly correlated
11 ZNF679 54 28.9 Weakly correlated
12 ZIM3 51 87.0 Weakly correlated
13 ZNF93 29 8.6 Weakly correlated
14 ZNF680 27 28.9 Weakly correlated
15 ZNF705B 26 28.9 Weakly correlated
16 ZNF75D 25 94.0 Weakly correlated
17 ZNF534 24 19.6 Weakly correlated
18 ZNF723 23 15.2 Weakly correlated
19 ZNF394 22 99.0 Weakly correlated
20 ZNF766 22 43.0 Weakly correlated
21 ZNF558 21 99.0 Weakly correlated
22 ZNF136 20 74.0 Highly correlated
23 ZNF263 18 180.0 Weakly correlated
24 ZNF425 15 94.0 Weakly correlated
25 ZNF583 15 99.0 Weakly correlated
26 ZNF182 14 99.0 Weakly correlated
27 ZNF18 14 160.0 Weakly correlated
28 ZNF528 14 43.0 Weakly correlated
29 ZNF560 14 43.0 Weakly correlated
30 ZNF8 14 99.0 Weakly correlated
31 ZFP69B 13 99.0 Weakly correlated
32 ZNF177 13 94.0 Weakly correlated
33 ZNF251 13 94.0 Weakly correlated
34 ZNF735 13 28.9 Weakly correlated
35 ZNF101 12 43.0 Weakly correlated
36 ZNF175 12 94.0 Weakly correlated
37 ZNF233 12 99.0 Weakly correlated
38 ZNF471 12 94.0 Weakly correlated
39 ZNF544 12 0.0 Weakly correlated
40 ZNF559 12 74.0 Highly correlated
41 ZNF793 12 99.0 Weakly correlated
42 ZFP90 11 99.0 Weakly correlated
43 ZNF140 11 99.0 Weakly correlated
44 ZNF253 11 19.6 Weakly correlated
45 ZNF274 11 99.0 Weakly correlated
46 ZNF347 11 43.0 Weakly correlated
47 ZNF473 11 43.0 Weakly correlated
48 ZNF500 11 160.0 Weakly correlated
49 ZNF510 11 99.0 Weakly correlated
50 ZNF514 11 94.0 Weakly correlated
51 ZNF689 11 99.0 Weakly correlated
52 ZNF699 11 99.0 Weakly correlated
53 ZNF726 11 28.9 Weakly correlated
54 ZNF729 11 8.6 Weakly correlated
55 ZNF747 11 43.0 Weakly correlated
56 ZNF763 11 15.2 Weakly correlated
57 ZKSCAN4 10 99.0 Weakly correlated
58 ZNF20 10 43.0 Weakly correlated
59 ZNF234 10 99.0 Weakly correlated
60 ZNF2 10 99.0 Weakly correlated
61 ZNF569 10 99.0 Weakly correlated
62 ZNF607 10 43.0 Weakly correlated
63 ZNF66 10 0.0 Weakly correlated
64 ZNF700 10 28.9 Weakly correlated
65 ZNF717 10 0.0 Weakly correlated
66 ZNF718 10 19.6 Weakly correlated
67 ZNF77 10 87.0 Weakly correlated
68 ZNF792 10 94.0 Weakly correlated
69 ZNF850 10 28.9 Weakly correlated
70 ZNF878 10 43.0 Weakly correlated
71 ZNF160 9 74.0 Highly correlated
72 ZNF268 9 94.0 Weakly correlated
73 ZNF286A 9 160.0 Weakly correlated
74 ZNF28 9 28.9 Weakly correlated
75 ZNF320 9 28.9 Weakly correlated
76 ZNF334 9 99.0 Weakly correlated
77 ZNF416 9 43.0 Weakly correlated
78 ZNF420 9 94.0 Weakly correlated
79 ZNF426 9 87.0 Weakly correlated
80 ZNF551 9 94.0 Weakly correlated
81 ZNF658 9 99.0 Weakly correlated
82 ZNF701 9 28.9 Weakly correlated
83 ZNF705E 9 0.0 Weakly correlated
84 ZNF727 9 19.6 Weakly correlated
85 ZNF845 9 28.9 Weakly correlated
86 ZNF215 8 99.0 Weakly correlated
87 ZNF230 8 28.9 Weakly correlated
88 ZNF429 8 28.9 Weakly correlated
89 ZNF443 8 19.6 Weakly correlated
90 ZNF556 8 94.0 Weakly correlated
91 ZNF589 8 28.9 Weakly correlated
92 ZNF705D 8 28.9 Weakly correlated
93 ZNF707 8 74.0 Highly correlated
94 ZNF728 8 19.6 Weakly correlated
95 ZNF772 8 94.0 Weakly correlated
96 ZNF777 8 319.0 Weakly correlated
97 ZNF813 8 28.9 Weakly correlated
98 ZNF814 8 0.0 Weakly correlated
99 ZFP30 7 99.0 Weakly correlated
100 ZFP37 7 99.0 Weakly correlated
101 ZFP92 7 99.0 Weakly correlated
102 ZKSCAN5 7 160.0 Weakly correlated
103 ZNF100 7 28.9 Weakly correlated
104 ZNF10 7 99.0 Weakly correlated
105 ZNF195 7 28.9 Weakly correlated
106 ZNF256 7 74.0 Highly correlated
107 ZNF287 7 99.0 Weakly correlated
108 ZNF354A 7 99.0 Weakly correlated
109 ZNF419 7 28.9 Weakly correlated
110 ZNF45 7 99.0 Weakly correlated
111 ZNF461 7 99.0 Weakly correlated
112 ZNF485 7 94.0 Weakly correlated
113 ZNF568 7 99.0 Weakly correlated
114 ZNF578 7 15.2 Weakly correlated
115 ZNF610 7 28.9 Weakly correlated
116 ZNF649 7 28.9 Weakly correlated
117 ZNF778 7 74.0 Highly correlated
118 ZKSCAN1 6 160.0 Weakly correlated
119 ZNF124 6 43.0 Weakly correlated
120 ZNF169 6 94.0 Weakly correlated
121 ZNF197 6 99.0 Weakly correlated
122 ZNF257 6 0.0 Weakly correlated
123 ZNF324 6 99.0 Weakly correlated
124 ZNF331 6 94.0 Weakly correlated
125 ZNF337 6 43.0 Weakly correlated
126 ZNF418 6 43.0 Weakly correlated
127 ZNF483 6 99.0 Weakly correlated
128 ZNF487 6 28.9 Weakly correlated
129 ZNF519 6 19.6 Weakly correlated
130 ZNF561 6 43.0 Weakly correlated
131 ZKSCAN2 5 180.0 Weakly correlated
132 ZNF223 5 43.0 Weakly correlated
133 ZNF446 5 94.0 Weakly correlated
134 ZNF468 5 28.9 Weakly correlated
135 ZNF546 5 99.0 Weakly correlated
136 ZNF547 5 74.0 Highly correlated
137 ZNF549 5 87.0 Weakly correlated
138 ZNF585A 5 99.0 Weakly correlated
139 ZNF605 5 99.0 Weakly correlated
140 ZNF626 5 0.0 Weakly correlated
141 ZNF641 5 99.0 Weakly correlated
142 ZNF730 5 19.6 Weakly correlated
143 ZNF765 5 8.6 Weakly correlated
144 ZNF786 5 99.0 Weakly correlated
145 ZNF789 5 99.0 Weakly correlated
146 ZNF81 5 99.0 Weakly correlated
147 ZNF880 5 28.9 Weakly correlated
148 ZFP57 4 87.0 Weakly correlated
149 ZNF114 4 28.9 Weakly correlated
150 ZNF133 4 99.0 Weakly correlated
151 ZNF180 4 99.0 Weakly correlated
152 ZNF205 4 180.0 Weakly correlated
153 ZNF211 4 94.0 Weakly correlated
154 ZNF229 4 99.0 Weakly correlated
155 ZNF250 4 99.0 Weakly correlated
156 ZNF267 4 43.0 Weakly correlated
157 ZNF282 4 319.0 Weakly correlated
158 ZNF302 4 43.0 Weakly correlated
159 ZNF304 4 99.0 Weakly correlated
160 ZNF33A 4 99.0 Weakly correlated
161 ZNF354B 4 99.0 Weakly correlated
162 ZNF430 4 19.6 Weakly correlated
163 ZNF432 4 99.0 Weakly correlated
164 ZNF439 4 8.6 Weakly correlated
165 ZNF552 4 28.9 Weakly correlated
166 ZNF555 4 94.0 Weakly correlated
167 ZNF584 4 99.0 Weakly correlated
168 ZNF585B 4 99.0 Weakly correlated
169 ZNF597 4 94.0 Weakly correlated
170 ZNF611 4 19.6 Weakly correlated
171 ZNF667 4 99.0 Weakly correlated
172 ZNF688 4 160.0 Weakly correlated
173 ZNF695 4 28.9 Weakly correlated
174 ZNF705G 4 28.9 Weakly correlated
175 ZNF776 4 43.0 Weakly correlated
176 ZNF7 4 99.0 Weakly correlated
177 ZNF891 4 99.0 Weakly correlated
178 ZFP69 3 99.0 Weakly correlated
179 ZIK1 3 87.0 Weakly correlated
180 ZKSCAN3 3 99.0 Weakly correlated
181 ZKSCAN8 3 160.0 Weakly correlated
182 ZNF12 3 99.0 Weakly correlated
183 ZNF132 3 94.0 Weakly correlated
184 ZNF135 3 94.0 Weakly correlated
185 ZNF157 3 99.0 Weakly correlated
186 ZNF213 3 180.0 Weakly correlated
187 ZNF221 3 74.0 Highly correlated
188 ZNF222 3 43.0 Weakly correlated
189 ZNF225 3 74.0 Highly correlated
190 ZNF25 3 99.0 Weakly correlated
191 ZNF285 3 94.0 Weakly correlated
192 ZNF343 3 74.0 Highly correlated
193 ZNF417 3 28.9 Weakly correlated
194 ZNF433 3 43.0 Weakly correlated
195 ZNF445 3 99.0 Weakly correlated
196 ZNF496 3 99.0 Weakly correlated
197 ZNF506 3 28.9 Weakly correlated
198 ZNF530 3 28.9 Weakly correlated
199 ZNF548 3 94.0 Weakly correlated
200 ZNF554 3 99.0 Weakly correlated
201 ZNF571 3 99.0 Weakly correlated
202 ZNF669 3 43.0 Weakly correlated
203 ZNF671 3 94.0 Weakly correlated
204 ZNF682 3 28.9 Weakly correlated
205 ZNF749 3 28.9 Weakly correlated
206 ZNF761 3 19.6 Weakly correlated
207 ZNF816 3 28.9 Weakly correlated
208 ZNF85 3 28.9 Weakly correlated
209 ZNF879 3 99.0 Weakly correlated
210 ZNF154 2 94.0 Weakly correlated
211 ZNF254 2 43.0 Weakly correlated
212 ZNF26 2 99.0 Weakly correlated
213 ZNF284 2 43.0 Weakly correlated
214 ZNF324B 2 99.0 Weakly correlated
215 ZNF442 2 43.0 Weakly correlated
216 ZNF454 2 99.0 Weakly correlated
217 ZNF527 2 99.0 Weakly correlated
218 ZNF529 2 99.0 Weakly correlated
219 ZNF543 2 99.0 Weakly correlated
220 ZNF550 2 94.0 Weakly correlated
221 ZNF562 2 28.9 Weakly correlated
222 ZNF565 2 99.0 Weakly correlated
223 ZNF573 2 94.0 Weakly correlated
224 ZNF587 2 28.9 Weakly correlated
225 ZNF677 2 99.0 Weakly correlated
226 ZNF716 2 19.6 Weakly correlated
227 ZNF74 2 99.0 Weakly correlated
228 ZNF780A 2 43.0 Weakly correlated
229 ZNF791 2 87.0 Weakly correlated
230 ZNF823 2 43.0 Weakly correlated
231 ZNF860 2 0.0 Weakly correlated
232 ZNF91 2 6.0 Weakly correlated
233 ZFP1 1 99.0 Weakly correlated
234 ZNF202 1 160.0 Weakly correlated
235 ZNF273 1 28.9 Weakly correlated
236 ZNF441 1 43.0 Weakly correlated
237 ZNF44 1 43.0 Weakly correlated
238 ZNF480 1 43.0 Weakly correlated
239 ZNF563 1 28.9 Weakly correlated
240 ZNF586 1 43.0 Weakly correlated
241 ZNF736 1 43.0 Weakly correlated
242 ZNF808 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF17 109 69.0 Moderately correlated
2 ZNF490 84 43.0 Weakly correlated
3 ZNF248 84 99.0 Weakly correlated
4 ZNF479 75 6.4 Weakly correlated
5 ZNF84 69 99.0 Weakly correlated
6 ZNF141 56 43.0 Weakly correlated
7 ZNF382 52 99.0 Weakly correlated
8 ZNF92 45 28.9 Weakly correlated
9 ZIM3 30 87.0 Weakly correlated
10 ZNF93 26 8.6 Weakly correlated
11 ZNF486 24 8.6 Weakly correlated
12 ZNF317 21 99.0 Weakly correlated
13 ZNF136 13 74.0 Highly correlated
14 ZNF425 13 94.0 Weakly correlated
15 ZNF679 8 28.9 Weakly correlated
16 ZNF75D 8 94.0 Weakly correlated
17 ZNF534 8 19.6 Weakly correlated
18 ZNF701 8 28.9 Weakly correlated
19 ZNF251 7 94.0 Weakly correlated
20 ZFP90 7 99.0 Weakly correlated
21 ZNF747 6 43.0 Weakly correlated
22 ZNF263 6 180.0 Weakly correlated
23 ZNF717 5 0.0 Weakly correlated
24 ZNF528 5 43.0 Weakly correlated
25 ZNF680 5 28.9 Weakly correlated
26 ZNF500 5 160.0 Weakly correlated
27 ZNF140 5 99.0 Weakly correlated
28 ZNF101 5 43.0 Weakly correlated
29 ZNF10 5 99.0 Weakly correlated
30 ZNF891 4 99.0 Weakly correlated
31 ZNF723 4 15.2 Weakly correlated
32 ZNF793 4 99.0 Weakly correlated
33 ZNF559 4 74.0 Highly correlated
34 ZNF468 4 28.9 Weakly correlated
35 ZNF250 4 99.0 Weakly correlated
36 ZNF354A 4 99.0 Weakly correlated
37 ZNF777 4 319.0 Weakly correlated
38 ZNF66 4 0.0 Weakly correlated
39 ZNF766 3 43.0 Weakly correlated
40 ZNF589 3 28.9 Weakly correlated
41 ZNF735 3 28.9 Weakly correlated
42 ZNF786 3 99.0 Weakly correlated
43 ZNF485 3 94.0 Weakly correlated
44 ZNF354B 2 99.0 Weakly correlated
45 ZNF543 2 99.0 Weakly correlated
46 ZNF558 2 99.0 Weakly correlated
47 ZNF597 2 94.0 Weakly correlated
48 ZNF626 2 0.0 Weakly correlated
49 ZNF527 2 99.0 Weakly correlated
50 ZNF197 2 99.0 Weakly correlated
51 ZNF85 2 28.9 Weakly correlated
52 ZNF334 2 99.0 Weakly correlated
53 ZNF394 2 99.0 Weakly correlated
54 ZNF221 2 74.0 Highly correlated
55 ZKSCAN5 1 160.0 Weakly correlated
56 ZNF18 1 160.0 Weakly correlated
57 ZNF160 1 74.0 Highly correlated
58 ZFP69B 1 99.0 Weakly correlated
59 ZNF560 1 43.0 Weakly correlated
60 ZNF584 1 99.0 Weakly correlated
61 ZNF682 1 28.9 Weakly correlated
62 ZFP57 1 87.0 Weakly correlated
63 ZFP1 1 99.0 Weakly correlated
64 ZNF337 1 43.0 Weakly correlated
65 ZNF677 1 99.0 Weakly correlated
66 ZFP92 1 99.0 Weakly correlated
67 ZNF324 1 99.0 Weakly correlated
68 ZNF605 1 99.0 Weakly correlated
69 ZNF175 1 94.0 Weakly correlated
70 ZNF429 1 28.9 Weakly correlated
71 ZNF483 1 99.0 Weakly correlated
72 ZNF257 1 0.0 Weakly correlated
73 ZNF8 1 99.0 Weakly correlated
74 ZNF202 1 160.0 Weakly correlated
75 ZNF471 1 94.0 Weakly correlated
76 ZNF671 1 94.0 Weakly correlated
77 ZNF563 1 28.9 Weakly correlated
78 ZNF44 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF141 43.0 Weakly correlated
2 ZNF317 99.0 Weakly correlated
3 ZNF486 8.6 Weakly correlated
4 ZNF534 19.6 Weakly correlated
5 ZNF701 28.9 Weakly correlated
6 ZNF75D 94.0 Weakly correlated
7 ZNF92 28.9 Weakly correlated
8 ZNF93 8.6 Weakly correlated