ZRdb KZFP & Repeats
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LINE_L1P2_5END

  • Name
    L1P2_5END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000317
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tccgttccaagatggccgaataggaacagctccggtctgcagctcccagcgtgatcgacgcagaagacgggtgatttctgcatttccaactgaggtacctggttcatctcactgggactggttggacagtgggtgcagcccacggagggcgagccgaagcagggcggggcatcgcctcacccgggaagcgcaaggggtcgggggatttccctttcctagccaagggaagccgtgacagactgtacctggaaaancgggacactcccgcccaaatactgcgcttttccaacggtcttagcaaacggcacaccaggagattntatcccgcgcctggctcggcgggtcccacgcccacggagccttgctcactgctagcgcagcagtctgagatcganctgcgaggcggcagcctggctgggggaggggcgtccgccattgctgaggcttgagtaggtaaacaaagcggccgggaagctcgaactgggcggagcccaccgcagctcagcgaggcctgctgcctctgtagactccacctctgggggcagggcatagctgaacaaaaggcagcagacaacttctgcagacttaaacgtccctgtctgacagctctgaagagagcagtggttctcccagcacggcgtttgagctctgagaacggacagactgcctcctcaagtgggtccctgacccccgtgtagcctaactgggagacacctcccagtaggggccgacngacacctcatacaggcgggtgcccctctgggacgaagcttccagaggaaggatcaggcagcaatatttgctgttctgcaatatttgctgttctgcagcctccgctggtgatacccaggcaaacagggtctggagtggacctccagcaaactccaacagacctgcagctgagggncctgactgttagaaggaaaactaacaaacagaaaggaatagcatcaacatcaacaaaaaggacatccacaccaaaaccccatctgtaggtcaccancatcaaagaccaaaggtagataaaaccacaaagatggggagaaaccagagcagaaaagctgaaaattctaaaaaccagagcgcctcttctcctccaaaggatcgcagctcctcgccagcaacggaacaaagctggacggagaatgactttgacgagttgacagaagtaggcttcagaaggtcggtaataacaaacttctccgagctaaaggaggatgttcgaacccatcgcaaggaagctaaaaaccttgaaaaaagattagacgaatggctaactagaataaacagtgtagagaagaccttaaatgacctgatggagctgaaaaccacggcacgagaactncgtgacgcatgcacaagcttcagtagccgattcgatcaagtggaagaaagggtatcagtgattgaagatcaaattaatgaaataaagcgagaaganaagnttagagaaaaaagagtaaaaagaaacgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtttgattggtgtacctgaaagtgacggggagaatggaaccaagttggaaaacactcttcaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacgccacaaagatactcctcgagaagagcaaccccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagactaacagcggatctctcggcagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctgaaggaagcactaaacatggaaaggaacaaccggtaccagccactgcaaaaacatgccaaattgtaaagaccatcgatgctaggaagaaactgcatcaactaacgggcaaaataaccagctaacatcataatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccaattaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctgtattcaggagacccatctcacgtgcagagac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 289 99.0 Weakly correlated
2 ZNF490 178 43.0 Weakly correlated
3 ZNF486 168 8.6 Weakly correlated
4 ZNF765 146 8.6 Weakly correlated
5 ZNF649 109 28.9 Highly correlated
6 ZNF317 84 99.0 Weakly correlated
7 ZNF93 81 8.6 Weakly correlated
8 ZNF141 58 43.0 Weakly correlated
9 ZNF679 52 28.9 Highly correlated
10 ZNF534 44 19.6 Moderately correlated
11 ZNF248 33 99.0 Weakly correlated
12 ZNF766 33 43.0 Weakly correlated
13 ZIM3 32 87.0 Weakly correlated
14 ZNF136 26 74.0 Weakly correlated
15 ZNF17 26 69.0 Weakly correlated
16 ZFP69B 25 99.0 Weakly correlated
17 ZNF701 24 28.9 Highly correlated
18 ZNF84 24 99.0 Weakly correlated
19 ZKSCAN1 20 160.0 Weakly correlated
20 ZNF197 20 99.0 Weakly correlated
21 ZNF251 20 94.0 Weakly correlated
22 ZNF18 19 160.0 Weakly correlated
23 ZNF479 19 6.4 Weakly correlated
24 ZNF75D 18 94.0 Weakly correlated
25 ZNF175 16 94.0 Weakly correlated
26 ZNF263 16 180.0 Weakly correlated
27 ZKSCAN8 14 160.0 Weakly correlated
28 ZNF2 14 99.0 Weakly correlated
29 ZNF705B 13 28.9 Highly correlated
30 ZFP37 12 99.0 Weakly correlated
31 ZNF394 12 99.0 Weakly correlated
32 ZNF554 12 99.0 Weakly correlated
33 ZNF589 12 28.9 Highly correlated
34 ZNF92 12 28.9 Highly correlated
35 ZNF324 11 99.0 Weakly correlated
36 ZNF558 11 99.0 Weakly correlated
37 ZNF584 11 99.0 Weakly correlated
38 ZNF705D 11 28.9 Highly correlated
39 ZNF723 11 15.2 Moderately correlated
40 ZNF425 10 94.0 Weakly correlated
41 ZFP57 9 87.0 Weakly correlated
42 ZNF793 9 99.0 Weakly correlated
43 ZNF585A 8 99.0 Weakly correlated
44 ZNF680 8 28.9 Highly correlated
45 ZNF610 7 28.9 Highly correlated
46 ZNF354A 6 99.0 Weakly correlated
47 ZFP90 5 99.0 Weakly correlated
48 ZNF101 5 43.0 Weakly correlated
49 ZNF528 5 43.0 Weakly correlated
50 ZNF547 5 74.0 Weakly correlated
51 ZNF133 4 99.0 Weakly correlated
52 ZNF28 4 28.9 Highly correlated
53 ZNF30 4 94.0 Weakly correlated
54 ZNF560 4 43.0 Weakly correlated
55 ZNF140 3 99.0 Weakly correlated
56 ZNF182 3 99.0 Weakly correlated
57 ZNF264 3 99.0 Weakly correlated
58 ZNF274 3 99.0 Weakly correlated
59 ZNF287 3 99.0 Weakly correlated
60 ZNF671 3 94.0 Weakly correlated
61 ZNF695 3 28.9 Highly correlated
62 ZNF75A 3 94.0 Weakly correlated
63 ZFP1 2 99.0 Weakly correlated
64 ZIK1 2 87.0 Weakly correlated
65 ZNF160 2 74.0 Weakly correlated
66 ZNF230 2 28.9 Highly correlated
67 ZNF273 2 28.9 Highly correlated
68 ZNF320 2 28.9 Highly correlated
69 ZNF343 2 74.0 Weakly correlated
70 ZNF445 2 99.0 Weakly correlated
71 ZNF471 2 94.0 Weakly correlated
72 ZNF485 2 94.0 Weakly correlated
73 ZNF559 2 74.0 Weakly correlated
74 ZNF563 2 28.9 Highly correlated
75 ZNF626 2 0.0 Weakly correlated
76 ZNF677 2 99.0 Weakly correlated
77 ZNF707 2 74.0 Weakly correlated
78 ZNF786 2 99.0 Weakly correlated
79 ZNF792 2 94.0 Weakly correlated
80 ZNF85 2 28.9 Highly correlated
81 ZNF8 2 99.0 Weakly correlated
82 RBAK 1 99.0 Weakly correlated
83 ZKSCAN5 1 160.0 Weakly correlated
84 ZNF157 1 99.0 Weakly correlated
85 ZNF189 1 99.0 Weakly correlated
86 ZNF257 1 0.0 Weakly correlated
87 ZNF284 1 43.0 Weakly correlated
88 ZNF334 1 99.0 Weakly correlated
89 ZNF347 1 43.0 Weakly correlated
90 ZNF350 1 99.0 Weakly correlated
91 ZNF429 1 28.9 Highly correlated
92 ZNF44 1 43.0 Weakly correlated
93 ZNF468 1 28.9 Highly correlated
94 ZNF480 1 43.0 Weakly correlated
95 ZNF506 1 28.9 Highly correlated
96 ZNF519 1 19.6 Moderately correlated
97 ZNF543 1 99.0 Weakly correlated
98 ZNF549 1 87.0 Weakly correlated
99 ZNF557 1 15.2 Moderately correlated
100 ZNF565 1 99.0 Weakly correlated
101 ZNF611 1 19.6 Moderately correlated
102 ZNF630 1 94.0 Weakly correlated
103 ZNF641 1 99.0 Weakly correlated
104 ZNF669 1 43.0 Weakly correlated
105 ZNF780A 1 43.0 Weakly correlated
106 ZNF789 1 99.0 Weakly correlated
107 ZNF846 1 74.0 Weakly correlated
108 ZNF860 1 0.0 Weakly correlated
109 ZNF879 1 99.0 Weakly correlated
110 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF490 174 43.0 Weakly correlated
2 ZNF765 130 8.6 Weakly correlated
3 ZNF649 104 28.9 Highly correlated
4 ZNF486 86 8.6 Weakly correlated
5 ZNF93 78 8.6 Weakly correlated
6 ZNF382 70 99.0 Weakly correlated
7 ZNF141 53 43.0 Weakly correlated
8 ZNF317 45 99.0 Weakly correlated
9 ZNF534 37 19.6 Moderately correlated
10 ZNF248 29 99.0 Weakly correlated
11 ZNF17 25 69.0 Weakly correlated
12 ZIM3 22 87.0 Weakly correlated
13 ZNF84 20 99.0 Weakly correlated
14 ZNF701 19 28.9 Highly correlated
15 ZNF136 19 74.0 Weakly correlated
16 ZNF479 12 6.4 Weakly correlated
17 ZFP69B 10 99.0 Weakly correlated
18 ZNF75D 9 94.0 Weakly correlated
19 ZNF425 8 94.0 Weakly correlated
20 ZNF92 7 28.9 Highly correlated
21 ZFP90 6 99.0 Weakly correlated
22 ZNF558 5 99.0 Weakly correlated
23 ZNF354A 5 99.0 Weakly correlated
24 ZNF793 4 99.0 Weakly correlated
25 ZNF263 4 180.0 Weakly correlated
26 ZNF723 4 15.2 Moderately correlated
27 ZNF585A 3 99.0 Weakly correlated
28 ZNF251 3 94.0 Weakly correlated
29 ZNF343 2 74.0 Weakly correlated
30 ZNF85 2 28.9 Highly correlated
31 ZNF680 2 28.9 Highly correlated
32 ZNF626 2 0.0 Weakly correlated
33 ZNF671 2 94.0 Weakly correlated
34 ZFP1 2 99.0 Weakly correlated
35 ZIK1 2 87.0 Weakly correlated
36 ZKSCAN1 2 160.0 Weakly correlated
37 ZNF677 2 99.0 Weakly correlated
38 ZNF324 1 99.0 Weakly correlated
39 ZFP57 1 87.0 Weakly correlated
40 ZNF584 1 99.0 Weakly correlated
41 ZNF10 1 99.0 Weakly correlated
42 ZNF264 1 99.0 Weakly correlated
43 ZNF28 1 28.9 Highly correlated
44 ZNF30 1 94.0 Weakly correlated
45 ZNF563 1 28.9 Highly correlated
46 ZNF468 1 28.9 Highly correlated
47 ZNF287 1 99.0 Weakly correlated
48 ZNF679 1 28.9 Highly correlated
49 ZNF554 1 99.0 Weakly correlated
50 ZNF780A 1 43.0 Weakly correlated
51 ZNF175 1 94.0 Weakly correlated
52 ZNF610 1 28.9 Highly correlated
53 ZNF18 1 160.0 Weakly correlated
54 ZNF157 1 99.0 Weakly correlated
55 ZNF197 1 99.0 Weakly correlated
56 ZNF257 1 0.0 Weakly correlated
57 ZNF75A 1 94.0 Weakly correlated
58 ZNF528 1 43.0 Weakly correlated
59 ZNF44 1 43.0 Weakly correlated
60 ZNF133 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP69B 99.0 Weakly correlated
2 ZIM3 87.0 Weakly correlated
3 ZNF136 74.0 Weakly correlated
4 ZNF141 43.0 Weakly correlated
5 ZNF317 99.0 Weakly correlated
6 ZNF486 8.6 Weakly correlated
7 ZNF490 43.0 Weakly correlated
8 ZNF701 28.9 Highly correlated
9 ZNF75D 94.0 Weakly correlated
10 ZNF84 99.0 Weakly correlated
11 ZNF92 28.9 Highly correlated
12 ZNF93 8.6 Weakly correlated