ZRdb KZFP & Repeats
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LINE_L1P1_5END

  • Name
    L1P1_5END
  • Repbase
    L1
  • Type
    LINE
  • Emergence
    19.6 Mya
  • Dfam Id
Description :

ORF1: ~1030-2046; ORF2 begins ~2110
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gggggnggagccaagatggccgaataggaacagctccggtctacagctcccagcgtgagcgacgcagaagacgggtgatttctgcatttccanctgaggtaccgggttcatctcactggggagtgccggacagtgggcgcaggacagtgggtgcagcgcaccgtgcgcgagccgaagcagggcgaggcatcgcctcacccgggaagcgcaaggggtcagggagttccctttcctagtcaaagaaaggggtgacagacggcacctggaaaatcgggtcactcccaccctaatactgcgcttttccgacgggcttaanaaacggcgcaccaggagattatatcccgcacctggctcggagggtcctacgcccacggagcctcgctcattgctagcacagcagtctgagatcaaactgcaaggcggcagcgaggctgggggaggggcgcccgccattgcccaggcttgantaggtaaacaaagcggccgggaagctcgaactgggtggagcccaccacagctcaaggaggcctgcctgcctctgtaggctccacctctgggggcagggcacagacaaacaaaaagacagcagtaacctctgcagacttaaatgtccctgtctgacagctttgaagagagcagtggttctcccagcacgcagctggagatctgagaacgggcagactgcctcctcaagtgggtccctgacccccgagcagcctaactgggaggcaccccccagtaggggcagactgacacctcacacggccgggtactcctctgagacaaaacttccagaggaacgatcaggcagcagcattcgcggttcaccaanatccgctgttctgcagccaccgctgctgatacccaggcaaacagggtctggagtggacctccagcaaactccaacagacctgcagctgagggtcctgnctgttagaaggaaaactaacaaacagaaaggacatccacaccaaaaacccatctgtacgtcaccatcatcaaagaccaaaggtagataaaaccacaaagatggggaaaaaacagagcagaaaaactggaaactctaaaaancagagcgcctctcctcctccaaaggaacgcagctcctcaccagcaacggaacaaagctggacggagaatgactttgacgagttgagagaagaaggcttcagacgatcaaactactccgagctanaggaggaagttcgaaccaatggcaaagaagttaaaaactttgaaaaaaaattagacgaatggataactagaataaccaatgcagagaagtccttaaaggacctgatggagctgaaagccaaggcncgagaactacgtgangaatgcagaagcctcagnagccgatgcgatcaactggaagaaagggtatcagtgatggaagatgaaatgaatgaaatgaagcgagaagggaagtttagagaaaaaagaataaaaagaaacgaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctgattggtgtacctgaaagtgacggggagaatggaaccaagttggaaaacactctgcaggatattatccaggagaacttccccaatctagcaaggcaggccaacattcagattcaggaaatacagagaacgccacaaagatactcctcgagaagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagactaacagcngatctctcggcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatactttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagcactaaacatggaaaggaacaaccggtaccagccactgcaaaaacatgccaaattgtaaagaccatcgaggctaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcataatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgctccaattaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacgtgcagagac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 599 99.0 Weakly correlated
2 ZNF486 420 8.6 Moderately correlated
3 ZNF649 216 28.9 Weakly correlated
4 ZNF93 155 8.6 Moderately correlated
5 ZNF765 148 8.6 Moderately correlated
6 ZNF84 90 99.0 Weakly correlated
7 ZNF317 57 99.0 Weakly correlated
8 ZNF679 43 28.9 Weakly correlated
9 ZNF248 40 99.0 Weakly correlated
10 ZNF141 37 43.0 Weakly correlated
11 ZNF92 35 28.9 Weakly correlated
12 ZNF479 33 6.4 Moderately correlated
13 ZNF766 32 43.0 Weakly correlated
14 ZNF490 30 43.0 Weakly correlated
15 ZFP69B 23 99.0 Weakly correlated
16 ZIM3 23 87.0 Weakly correlated
17 ZNF2 22 99.0 Weakly correlated
18 ZNF680 20 28.9 Weakly correlated
19 ZFP57 19 87.0 Weakly correlated
20 ZNF324 19 99.0 Weakly correlated
21 ZNF560 18 43.0 Weakly correlated
22 ZNF528 17 43.0 Weakly correlated
23 ZNF251 16 94.0 Weakly correlated
24 ZNF394 16 99.0 Weakly correlated
25 ZFP37 15 99.0 Weakly correlated
26 ZNF425 15 94.0 Weakly correlated
27 ZNF101 14 43.0 Weakly correlated
28 ZNF136 14 74.0 Weakly correlated
29 ZNF610 14 28.9 Weakly correlated
30 ZNF705B 13 28.9 Weakly correlated
31 ZNF18 12 160.0 Weakly correlated
32 ZNF558 12 99.0 Weakly correlated
33 ZNF793 12 99.0 Weakly correlated
34 ZNF17 11 69.0 Weakly correlated
35 ZNF534 11 19.6 Highly correlated
36 ZKSCAN1 10 160.0 Weakly correlated
37 ZNF705D 10 28.9 Weakly correlated
38 ZNF707 10 74.0 Weakly correlated
39 ZNF175 9 94.0 Weakly correlated
40 ZNF28 9 28.9 Weakly correlated
41 ZNF723 9 15.2 Moderately correlated
42 ZNF792 9 94.0 Weakly correlated
43 ZNF547 8 74.0 Weakly correlated
44 ZNF641 8 99.0 Weakly correlated
45 ZNF701 8 28.9 Weakly correlated
46 ZNF264 7 99.0 Weakly correlated
47 ZNF419 7 28.9 Weakly correlated
48 ZNF85 7 28.9 Weakly correlated
49 ZNF8 7 99.0 Weakly correlated
50 ZNF10 6 99.0 Weakly correlated
51 ZNF133 6 99.0 Weakly correlated
52 ZNF140 6 99.0 Weakly correlated
53 ZNF202 6 160.0 Weakly correlated
54 ZNF257 6 0.0 Weakly correlated
55 ZNF671 6 94.0 Weakly correlated
56 ZNF75D 6 94.0 Weakly correlated
57 ZNF33A 5 99.0 Weakly correlated
58 ZNF519 5 19.6 Highly correlated
59 ZNF735 5 28.9 Weakly correlated
60 ZKSCAN8 4 160.0 Weakly correlated
61 ZNF100 4 28.9 Weakly correlated
62 ZNF160 4 74.0 Weakly correlated
63 ZNF169 4 94.0 Weakly correlated
64 ZNF182 4 99.0 Weakly correlated
65 ZNF274 4 99.0 Weakly correlated
66 ZNF354C 4 99.0 Weakly correlated
67 ZNF445 4 99.0 Weakly correlated
68 ZNF585B 4 99.0 Weakly correlated
69 ZNF589 4 28.9 Weakly correlated
70 ZNF611 4 19.6 Highly correlated
71 ZNF682 4 28.9 Weakly correlated
72 RBAK 3 99.0 Weakly correlated
73 ZFP90 3 99.0 Weakly correlated
74 ZNF124 3 43.0 Weakly correlated
75 ZNF197 3 99.0 Weakly correlated
76 ZNF211 3 94.0 Weakly correlated
77 ZNF331 3 94.0 Weakly correlated
78 ZNF334 3 99.0 Weakly correlated
79 ZNF354A 3 99.0 Weakly correlated
80 ZNF383 3 99.0 Weakly correlated
81 ZNF441 3 43.0 Weakly correlated
82 ZNF485 3 94.0 Weakly correlated
83 ZNF549 3 87.0 Weakly correlated
84 ZNF554 3 99.0 Weakly correlated
85 ZNF605 3 99.0 Weakly correlated
86 ZNF778 3 74.0 Weakly correlated
87 ZNF786 3 99.0 Weakly correlated
88 ZNF816 3 28.9 Weakly correlated
89 ZFP69 2 99.0 Weakly correlated
90 ZKSCAN2 2 180.0 Weakly correlated
91 ZKSCAN3 2 99.0 Weakly correlated
92 ZKSCAN4 2 99.0 Weakly correlated
93 ZKSCAN5 2 160.0 Weakly correlated
94 ZNF212 2 160.0 Weakly correlated
95 ZNF223 2 43.0 Weakly correlated
96 ZNF224 2 69.0 Weakly correlated
97 ZNF225 2 74.0 Weakly correlated
98 ZNF250 2 99.0 Weakly correlated
99 ZNF254 2 43.0 Weakly correlated
100 ZNF263 2 180.0 Weakly correlated
101 ZNF26 2 99.0 Weakly correlated
102 ZNF273 2 28.9 Weakly correlated
103 ZNF282 2 319.0 Weakly correlated
104 ZNF320 2 28.9 Weakly correlated
105 ZNF343 2 74.0 Weakly correlated
106 ZNF347 2 43.0 Weakly correlated
107 ZNF417 2 28.9 Weakly correlated
108 ZNF418 2 43.0 Weakly correlated
109 ZNF430 2 19.6 Highly correlated
110 ZNF440 2 28.9 Weakly correlated
111 ZNF442 2 43.0 Weakly correlated
112 ZNF44 2 43.0 Weakly correlated
113 ZNF454 2 99.0 Weakly correlated
114 ZNF45 2 99.0 Weakly correlated
115 ZNF471 2 94.0 Weakly correlated
116 ZNF483 2 99.0 Weakly correlated
117 ZNF484 2 99.0 Weakly correlated
118 ZNF506 2 28.9 Weakly correlated
119 ZNF529 2 99.0 Weakly correlated
120 ZNF530 2 28.9 Weakly correlated
121 ZNF544 2 0.0 Weakly correlated
122 ZNF550 2 94.0 Weakly correlated
123 ZNF559 2 74.0 Weakly correlated
124 ZNF561 2 43.0 Weakly correlated
125 ZNF567 2 99.0 Weakly correlated
126 ZNF582 2 99.0 Weakly correlated
127 ZNF584 2 99.0 Weakly correlated
128 ZNF585A 2 99.0 Weakly correlated
129 ZNF587 2 28.9 Weakly correlated
130 ZNF614 2 99.0 Weakly correlated
131 ZNF616 2 43.0 Weakly correlated
132 ZNF667 2 99.0 Weakly correlated
133 ZNF674 2 99.0 Weakly correlated
134 ZNF677 2 99.0 Weakly correlated
135 ZNF695 2 28.9 Weakly correlated
136 ZNF716 2 19.6 Highly correlated
137 ZNF749 2 28.9 Weakly correlated
138 ZNF776 2 43.0 Weakly correlated
139 ZNF808 2 19.6 Highly correlated
140 ZNF81 2 99.0 Weakly correlated
141 ZNF823 2 43.0 Weakly correlated
142 ZNF879 2 99.0 Weakly correlated
143 ZFP14 1 99.0 Weakly correlated
144 ZFP1 1 99.0 Weakly correlated
145 ZFP82 1 99.0 Weakly correlated
146 ZIK1 1 87.0 Weakly correlated
147 ZIM2 1 0.0 Weakly correlated
148 ZNF114 1 28.9 Weakly correlated
149 ZNF12 1 99.0 Weakly correlated
150 ZNF132 1 94.0 Weakly correlated
151 ZNF135 1 94.0 Weakly correlated
152 ZNF154 1 94.0 Weakly correlated
153 ZNF157 1 99.0 Weakly correlated
154 ZNF177 1 94.0 Weakly correlated
155 ZNF180 1 99.0 Weakly correlated
156 ZNF181 1 94.0 Weakly correlated
157 ZNF184 1 99.0 Weakly correlated
158 ZNF189 1 99.0 Weakly correlated
159 ZNF19 1 99.0 Weakly correlated
160 ZNF205 1 180.0 Weakly correlated
161 ZNF214 1 99.0 Weakly correlated
162 ZNF222 1 43.0 Weakly correlated
163 ZNF230 1 28.9 Weakly correlated
164 ZNF234 1 99.0 Weakly correlated
165 ZNF235 1 99.0 Weakly correlated
166 ZNF253 1 19.6 Highly correlated
167 ZNF267 1 43.0 Weakly correlated
168 ZNF284 1 43.0 Weakly correlated
169 ZNF285 1 94.0 Weakly correlated
170 ZNF287 1 99.0 Weakly correlated
171 ZNF300 1 99.0 Weakly correlated
172 ZNF302 1 43.0 Weakly correlated
173 ZNF304 1 99.0 Weakly correlated
174 ZNF30 1 94.0 Weakly correlated
175 ZNF311 1 99.0 Weakly correlated
176 ZNF324B 1 99.0 Weakly correlated
177 ZNF337 1 43.0 Weakly correlated
178 ZNF33B 1 99.0 Weakly correlated
179 ZNF354B 1 99.0 Weakly correlated
180 ZNF37A 1 99.0 Weakly correlated
181 ZNF398 1 99.0 Weakly correlated
182 ZNF3 1 160.0 Weakly correlated
183 ZNF41 1 99.0 Weakly correlated
184 ZNF420 1 94.0 Weakly correlated
185 ZNF429 1 28.9 Weakly correlated
186 ZNF431 1 28.9 Weakly correlated
187 ZNF432 1 99.0 Weakly correlated
188 ZNF433 1 43.0 Weakly correlated
189 ZNF439 1 8.6 Moderately correlated
190 ZNF468 1 28.9 Weakly correlated
191 ZNF480 1 43.0 Weakly correlated
192 ZNF487 1 28.9 Weakly correlated
193 ZNF496 1 99.0 Weakly correlated
194 ZNF510 1 99.0 Weakly correlated
195 ZNF514 1 94.0 Weakly correlated
196 ZNF525 1 19.6 Highly correlated
197 ZNF527 1 99.0 Weakly correlated
198 ZNF540 1 87.0 Weakly correlated
199 ZNF543 1 99.0 Weakly correlated
200 ZNF548 1 94.0 Weakly correlated
201 ZNF551 1 94.0 Weakly correlated
202 ZNF552 1 28.9 Weakly correlated
203 ZNF555 1 94.0 Weakly correlated
204 ZNF556 1 94.0 Weakly correlated
205 ZNF557 1 15.2 Moderately correlated
206 ZNF562 1 28.9 Weakly correlated
207 ZNF564 1 74.0 Weakly correlated
208 ZNF565 1 99.0 Weakly correlated
209 ZNF566 1 99.0 Weakly correlated
210 ZNF573 1 94.0 Weakly correlated
211 ZNF583 1 99.0 Weakly correlated
212 ZNF607 1 43.0 Weakly correlated
213 ZNF613 1 99.0 Weakly correlated
214 ZNF615 1 99.0 Weakly correlated
215 ZNF620 1 99.0 Weakly correlated
216 ZNF626 1 0.0 Weakly correlated
217 ZNF627 1 74.0 Weakly correlated
218 ZNF658 1 99.0 Weakly correlated
219 ZNF675 1 8.6 Moderately correlated
220 ZNF681 1 28.9 Weakly correlated
221 ZNF684 1 99.0 Weakly correlated
222 ZNF69 1 28.9 Weakly correlated
223 ZNF705G 1 28.9 Weakly correlated
224 ZNF729 1 8.6 Moderately correlated
225 ZNF730 1 19.6 Highly correlated
226 ZNF737 1 28.9 Weakly correlated
227 ZNF746 1 99.0 Weakly correlated
228 ZNF74 1 99.0 Weakly correlated
229 ZNF764 1 160.0 Weakly correlated
230 ZNF777 1 319.0 Weakly correlated
231 ZNF780A 1 43.0 Weakly correlated
232 ZNF785 1 94.0 Weakly correlated
233 ZNF789 1 99.0 Weakly correlated
234 ZNF790 1 99.0 Weakly correlated
235 ZNF791 1 87.0 Weakly correlated
236 ZNF799 1 43.0 Weakly correlated
237 ZNF7 1 99.0 Weakly correlated
238 ZNF805 1 99.0 Weakly correlated
239 ZNF846 1 74.0 Weakly correlated
240 ZNF878 1 43.0 Weakly correlated
241 ZNF880 1 28.9 Weakly correlated
242 ZNF91 1 6.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF649 209 28.9 Weakly correlated
2 ZNF382 169 99.0 Weakly correlated
3 ZNF486 160 8.6 Moderately correlated
4 ZNF93 138 8.6 Moderately correlated
5 ZNF765 126 8.6 Moderately correlated
6 ZNF84 68 99.0 Weakly correlated
7 ZNF248 33 99.0 Weakly correlated
8 ZNF141 33 43.0 Weakly correlated
9 ZNF317 24 99.0 Weakly correlated
10 ZNF490 24 43.0 Weakly correlated
11 ZNF92 23 28.9 Weakly correlated
12 ZNF425 14 94.0 Weakly correlated
13 ZNF766 13 43.0 Weakly correlated
14 ZIM3 12 87.0 Weakly correlated
15 ZNF17 8 69.0 Weakly correlated
16 ZNF136 8 74.0 Weakly correlated
17 ZNF701 7 28.9 Weakly correlated
18 ZNF558 5 99.0 Weakly correlated
19 ZNF534 5 19.6 Highly correlated
20 ZNF10 5 99.0 Weakly correlated
21 ZNF28 4 28.9 Weakly correlated
22 ZNF680 4 28.9 Weakly correlated
23 ZNF528 4 43.0 Weakly correlated
24 ZNF793 4 99.0 Weakly correlated
25 ZNF251 4 94.0 Weakly correlated
26 ZNF479 3 6.4 Moderately correlated
27 ZNF723 3 15.2 Moderately correlated
28 ZNF792 3 94.0 Weakly correlated
29 ZNF264 3 99.0 Weakly correlated
30 ZNF101 3 43.0 Weakly correlated
31 ZNF33A 3 99.0 Weakly correlated
32 ZFP69B 2 99.0 Weakly correlated
33 ZNF682 2 28.9 Weakly correlated
34 ZNF75D 2 94.0 Weakly correlated
35 ZNF641 2 99.0 Weakly correlated
36 ZNF250 2 99.0 Weakly correlated
37 ZNF671 2 94.0 Weakly correlated
38 ZFP57 2 87.0 Weakly correlated
39 ZNF133 2 99.0 Weakly correlated
40 ZNF202 2 160.0 Weakly correlated
41 ZNF808 1 19.6 Highly correlated
42 ZNF879 1 99.0 Weakly correlated
43 ZNF675 1 8.6 Moderately correlated
44 ZNF729 1 8.6 Moderately correlated
45 ZNF548 1 94.0 Weakly correlated
46 ZNF735 1 28.9 Weakly correlated
47 ZNF383 1 99.0 Weakly correlated
48 ZNF81 1 99.0 Weakly correlated
49 ZNF324 1 99.0 Weakly correlated
50 ZNF160 1 74.0 Weakly correlated
51 ZNF212 1 160.0 Weakly correlated
52 ZNF257 1 0.0 Weakly correlated
53 ZNF41 1 99.0 Weakly correlated
54 ZNF140 1 99.0 Weakly correlated
55 ZNF585A 1 99.0 Weakly correlated
56 ZNF587 1 28.9 Weakly correlated
57 ZFP90 1 99.0 Weakly correlated
58 ZNF85 1 28.9 Weakly correlated
59 ZNF746 1 99.0 Weakly correlated
60 ZNF419 1 28.9 Weakly correlated
61 ZNF786 1 99.0 Weakly correlated
62 ZNF417 1 28.9 Weakly correlated
63 ZNF343 1 74.0 Weakly correlated
64 ZNF737 1 28.9 Weakly correlated
65 ZNF716 1 19.6 Highly correlated
66 ZNF823 1 43.0 Weakly correlated
67 ZNF543 1 99.0 Weakly correlated
68 ZNF674 1 99.0 Weakly correlated
69 ZNF679 1 28.9 Weakly correlated
70 ZNF560 1 43.0 Weakly correlated
71 ZNF607 1 43.0 Weakly correlated
72 ZNF585B 1 99.0 Weakly correlated
73 ZNF684 1 99.0 Weakly correlated
74 ZNF91 1 6.0 Moderately correlated
75 ZNF354A 1 99.0 Weakly correlated
76 ZNF337 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF136 74.0 Weakly correlated
2 ZNF141 43.0 Weakly correlated
3 ZNF317 99.0 Weakly correlated
4 ZNF486 8.6 Moderately correlated
5 ZNF490 43.0 Weakly correlated
6 ZNF701 28.9 Weakly correlated
7 ZNF84 99.0 Weakly correlated
8 ZNF92 28.9 Weakly correlated
9 ZNF93 8.6 Moderately correlated