ZRdb KZFP & Repeats
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LINE_L1MEJ_5END

  • Name
    L1MEJ_5END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000314
Description :

Contains a Gag ORF1 (~510-1385); the Pol ORF2 starts at ~2011.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
acagaggattctgggaanatggcgacctgaacgcggctcccttcccctccactcccaactccaatctatctgcctctcctgagccaagcggctgctggggcctacgggcggctgggtgcaagcgaggcctcgggctctgtcgggatcccgacggagagagctggtgcagggctttctcccccgtgggccgggcgagagcctggagaccagtancggggagccctaagggcgggatcagggggaaggtcctcgtgagtgcgccgggtctccctggcccccaagaggccgagaaggagctgaacgggtgggctgagtcctccctgcccctgaggctggagaggtgcgaggagaccagggagcagggaggcttcctccnggtgcctcggcaggggactggcagcctgcctgctnctacaccgccggcccacgggggcagagaccgctttgccttccaccgcttgcgggactgccgccacttagggtactccaacagccggacctgagccccagtgagccgacaaagaaaaataacaacncatctaagggggcccagcagccagagagaggaagatcagncagaacaancagaacacacgcccagcgaaatagagctgctggaggagacagatgacaacttgaacgaaaaaataataagagcacttaaggagattcaagtacagcacaaaaaagactttctggaactaaaaaacatgatttccnaactaaaaaattcagtagatgaattgaaggagaggatggtcactgttgagacccgaattagtggcctggaagatcaagtggaagaaatatctcaaagcacagagcaaaaatacaaagagatggaaatcatgagggaaaagataagagacttggaggatagatccaggagacctaacatgcgaataataggagttccagaaggagaaaaaggaacagatggaggagaggcaataattaaacaaataatagaagaaaatttccctgagctgaagaaagacctgagtctgcagattgaaagggctcaccgagttccaggcaggattgatgagaaaagacacacacctaggcatatcctggtaaaattcctgaactccaaggataaagagaaaatcttacaagcttccagacagaaagaacaagttacttacaaaggaaaaagaatcagactggcatcggacttctcatctgcaacactggaagctagaagacggtggaataacatctacagactactgagagaaaaggactgcaacccaagaatcctatacccagccaagatatcattcacctgtcagggcgaaagaaagatatttgcggatatgcaaggattcagagagtatatcacccacgtaccccatctgaggaaaatactcgagaaaagactctaaccaaacaacaaatgaatcagaacagagacctcaagataggggaagatgaagaggagaggaaacagtggtgagcaatgaaccttgcaatatatatatagttaaatctaaatggataatgatagactgtctgggaatgtgtaatataagtgctaaataaggattcttgaaatagaagagacatactgcaagggaaattctaataatagtctagaactaaaagtactaaactatctcagcaaaacctaggagttgggggtgggggagaggggagagggaaagtaaaagcattccaaaggtctcatctggnggggggggggggaagcggggaagtaaaagtattctaaaggtctcatcttattggggtgggggggagcagggaggaaatagagcgtcttggtgggggaaatagttggtatcttgttttcanataatagtagagaaatatgtgtttgattatgagngcagggaaagggaaggtaaccattaatggaatggaaaagtacagtagaacttccaaattaacaaggggaaaaaagaaaatgaatagcaacttgatcaaaccagcaaaaataaggaaaaagaaaaaaaanaaaaaaacaaaataaataaanaataaagtaagatggaaggaataaaatcaagtatatcagtcgttacactaaatgtgaatggactgaattctcccattaaaagacagagactgtcagattgggttaaaaaacaaaacccagctatatgctgtttacaagaaacacacttaaaacaaagtgat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 39 99.0 Highly correlated
2 ZNF317 39 99.0 Highly correlated
3 ZIM3 23 87.0 Moderately correlated
4 ZNF680 20 28.9 Weakly correlated
5 ZNF766 19 43.0 Weakly correlated
6 ZNF394 15 99.0 Highly correlated
7 ZNF723 13 15.2 Weakly correlated
8 ZNF705B 12 28.9 Weakly correlated
9 ZNF263 12 180.0 Weakly correlated
10 ZNF287 11 99.0 Highly correlated
11 ZNF534 8 19.6 Weakly correlated
12 ZNF169 7 94.0 Moderately correlated
13 ZNF705D 7 28.9 Weakly correlated
14 ZNF528 7 43.0 Weakly correlated
15 ZNF679 6 28.9 Weakly correlated
16 ZNF2 6 99.0 Highly correlated
17 ZNF490 6 43.0 Weakly correlated
18 ZNF479 5 6.4 Weakly correlated
19 ZNF549 5 87.0 Moderately correlated
20 ZNF558 5 99.0 Highly correlated
21 ZFP37 5 99.0 Highly correlated
22 ZNF354A 5 99.0 Highly correlated
23 ZNF136 5 74.0 Weakly correlated
24 ZNF589 5 28.9 Weakly correlated
25 ZKSCAN1 5 160.0 Weakly correlated
26 ZNF175 4 94.0 Moderately correlated
27 ZFP69B 4 99.0 Highly correlated
28 ZNF101 4 43.0 Weakly correlated
29 ZNF197 4 99.0 Highly correlated
30 ZNF133 3 99.0 Highly correlated
31 ZNF793 3 99.0 Highly correlated
32 ZNF597 3 94.0 Moderately correlated
33 ZNF274 3 99.0 Highly correlated
34 ZNF347 3 43.0 Weakly correlated
35 ZNF140 3 99.0 Highly correlated
36 ZNF257 3 0.0 Weakly correlated
37 ZNF701 3 28.9 Weakly correlated
38 ZNF84 3 99.0 Highly correlated
39 ZNF583 3 99.0 Highly correlated
40 ZNF75D 3 94.0 Moderately correlated
41 ZNF547 3 74.0 Weakly correlated
42 ZNF92 2 28.9 Weakly correlated
43 ZNF471 2 94.0 Moderately correlated
44 ZNF584 2 99.0 Highly correlated
45 ZNF585A 2 99.0 Highly correlated
46 ZNF735 2 28.9 Weakly correlated
47 ZNF28 2 28.9 Weakly correlated
48 ZFP30 2 99.0 Highly correlated
49 ZNF320 2 28.9 Weakly correlated
50 ZKSCAN8 2 160.0 Weakly correlated
51 ZNF141 2 43.0 Weakly correlated
52 ZNF441 2 43.0 Weakly correlated
53 ZNF202 1 160.0 Weakly correlated
54 ZFP28 1 99.0 Highly correlated
55 ZNF18 1 160.0 Weakly correlated
56 ZNF182 1 99.0 Highly correlated
57 ZNF707 1 74.0 Weakly correlated
58 ZNF160 1 74.0 Weakly correlated
59 ZNF157 1 99.0 Highly correlated
60 ZNF777 1 319.0 Weakly correlated
61 ZFP69 1 99.0 Highly correlated
62 ZNF808 1 19.6 Weakly correlated
63 ZNF823 1 43.0 Weakly correlated
64 ZNF879 1 99.0 Highly correlated
65 ZNF91 1 6.0 Weakly correlated
66 ZNF486 1 8.6 Weakly correlated
67 ZNF568 1 99.0 Highly correlated
68 ZNF519 1 19.6 Weakly correlated
69 ZNF485 1 94.0 Moderately correlated
70 ZNF484 1 99.0 Highly correlated
71 PRDM9 1 0.0 Weakly correlated
72 ZNF470 1 99.0 Highly correlated
73 ZNF554 1 99.0 Highly correlated
74 ZNF44 1 43.0 Weakly correlated
75 ZNF563 1 28.9 Weakly correlated
76 ZNF682 1 28.9 Weakly correlated
77 ZNF573 1 94.0 Moderately correlated
78 ZNF425 1 94.0 Moderately correlated
79 ZNF34 1 99.0 Highly correlated
80 ZNF334 1 99.0 Highly correlated
81 ZNF611 1 19.6 Weakly correlated
82 ZNF671 1 94.0 Moderately correlated
83 ZNF26 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 9 15.2 Weakly correlated
2 ZIM3 8 87.0 Moderately correlated
3 ZNF317 8 99.0 Highly correlated
4 ZNF680 7 28.9 Weakly correlated
5 ZNF534 6 19.6 Weakly correlated
6 ZNF287 4 99.0 Highly correlated
7 ZNF705B 4 28.9 Weakly correlated
8 ZNF263 4 180.0 Weakly correlated
9 ZNF136 3 74.0 Weakly correlated
10 ZNF490 3 43.0 Weakly correlated
11 ZNF354A 3 99.0 Highly correlated
12 ZNF382 3 99.0 Highly correlated
13 ZNF257 3 0.0 Weakly correlated
14 ZNF793 2 99.0 Highly correlated
15 ZNF705D 2 28.9 Weakly correlated
16 ZNF528 2 43.0 Weakly correlated
17 ZNF347 2 43.0 Weakly correlated
18 ZNF133 2 99.0 Highly correlated
19 ZNF671 1 94.0 Moderately correlated
20 ZNF197 1 99.0 Highly correlated
21 ZNF707 1 74.0 Weakly correlated
22 ZNF701 1 28.9 Weakly correlated
23 ZNF558 1 99.0 Highly correlated
24 ZFP69 1 99.0 Highly correlated
25 ZNF777 1 319.0 Weakly correlated
26 ZNF584 1 99.0 Highly correlated
27 ZNF485 1 94.0 Moderately correlated
28 ZNF471 1 94.0 Moderately correlated
29 ZNF44 1 43.0 Weakly correlated
30 ZNF34 1 99.0 Highly correlated
31 ZNF766 1 43.0 Weakly correlated
32 ZNF597 1 94.0 Moderately correlated
33 ZNF589 1 28.9 Weakly correlated
34 ZFP28 1 99.0 Highly correlated
35 ZNF320 1 28.9 Weakly correlated
36 ZNF879 1 99.0 Highly correlated
37 ZNF479 1 6.4 Weakly correlated
38 ZNF140 1 99.0 Highly correlated
39 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF317 99.0 Highly correlated
2 ZNF680 28.9 Weakly correlated