ZRdb KZFP & Repeats
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LINE_L1MEI_5END

  • Name
    L1MEI_5END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000313
Description :

Contains a Gag ORF1 (~630-1610); the Pol ORF2 starts at ~2055.Substitution level in the reconstructed Laurasiatherian genome is 32%.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gaaagacttccggtcaagatggcgcagtaagttcacgctttgacgcaccccctctgctccaaacacatagcaatgatagataaaatataaaaagagaaaaccaaaaagacatagccgggctcaaaaacaagataaacatctccgtggaccagaaacggaacagaaacgcaaagcggtgagcggggctgaagccgcgggcctgctgggctccgggtccggaagcaggcagnggcggccgggagttcggctcctgcggggtaacggggactaaaagtgctccacgcgaggcgggggaccggagccaggctcactgcttgaagccaggagcttgtgaaaggaggctgaaaaaaactgctgccgacccgctgcctggggaggcgggaggacacagacacagcctcgcgaccaggaactgagccaagccgcccgctggctcggtgactggatctgcgatatccccaatatcaccgcgggacaggagccccgaancgccantataagacctggttctggactgggggcccggggggccgggtggaggcaaccgcaaaaccgctagacagggaggggtgagcacagagggagggagagagagaaanaaaaagaaaanaaaaaacttcccactcaaaatgagcctgcaaaccaaaattccaaaacacatgaagaaatctaatgctaagaaagacagccaacaaaatcaacaatcggaacatgaattcactccagatgaaattaattttatagaacagtctganaaagactttaaaataagtatgtttaggatnctcaaagagataaatgaaggaataacatccattaaaaaagaacaagaaattatgaaacaaaaacaggcagaaatgaaacaagaacaggtggatatgaaaaagaaccaattagaaatcttggaaatgaaaaatatagtcattgaaataaaaaactcaatagatgggataaactctagactggacacagtcgaagagagaattagtgaattggaagatagtactgaggaattcacccagaacgcagcacagagagataaagagataaaaaatatgaaagagcagttaagagacatggaggatagattgagaggctccaacatacgtctaataggagttccagaagaagagaatagagggaatggcggagaagcaatatttgaagagataatggctgagaattttccagaattgaagaaagacatgagtcctcagattgaaagtgcactccgagtaccgagcaggataaataaaaataaatccacacctagacacatcgtagtgaaactgcagaacatcaaggataaagagaaaatcttaaaagctaccagagagaaaagacagattacctacaaaggaacgacaattagactgacagcagacttctcatcagcaacaatagatgccagaagacaatggagtaatatcttcaaagtgctgagggaaaataactgtcaacctagaattctatacccagctaaactatcattcaagagtgagggcaaaataaagacattttcagacatacaaagactaagagagtttaccacccacagaccctcactaaaagaactactaaaggatgtacttcagcaagaagaaaagtgaacccagagggaaggcgtgggatacaagaaacaatggtgagcanagaaattgataaaatatgttggtaaatttaattaactattgactgtaaaaaatanntntgttttttntnaaaaaaggtaaaactaaaattctagacaacaataacataaagtaggaagggggtgttcaatgggtagttaaagcgtgctaaggtccttgtcntgttcgggaggaggatagaaatactgaataactttagactttgttagaaaaatttatagttaagtatgtatgttaaaaatttaagggtaaccactaaaagaatagaaatanaatntatagcttccaaaccagcagagaaagggaaaaagggaatanagaaaactttatcaatccaacagaaggcaggaaaggagagaaaaagnaaagaaaaagnatgataaacagaaaacacaaaataagatggtagaaataagtccaaatatatcagtaatcacaataaatgtaaatggattaaactcacctattaaaagacagagattatcagattggattaaaaaaaaaaatccagctatatgctgtttacaagagacacacctaaaacaaaacgacacagaaag
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 170 99.0 Highly correlated
2 ZNF317 163 99.0 Highly correlated
3 ZIM3 67 87.0 Moderately correlated
4 ZNF394 62 99.0 Highly correlated
5 ZNF766 53 43.0 Weakly correlated
6 ZNF680 48 28.9 Weakly correlated
7 ZFP28 36 99.0 Highly correlated
8 ZNF2 35 99.0 Highly correlated
9 ZNF263 32 180.0 Weakly correlated
10 ZFP37 30 99.0 Highly correlated
11 ZNF705B 25 28.9 Weakly correlated
12 ZNF182 24 99.0 Highly correlated
13 ZNF101 21 43.0 Weakly correlated
14 ZNF723 21 15.2 Weakly correlated
15 ZFP69B 20 99.0 Highly correlated
16 ZFP82 18 99.0 Highly correlated
17 ZKSCAN1 18 160.0 Weakly correlated
18 ZNF136 18 74.0 Weakly correlated
19 ZNF18 18 160.0 Weakly correlated
20 ZNF558 18 99.0 Highly correlated
21 ZNF175 17 94.0 Moderately correlated
22 ZNF324 17 99.0 Highly correlated
23 ZNF354A 17 99.0 Highly correlated
24 ZNF679 17 28.9 Weakly correlated
25 ZNF705D 17 28.9 Weakly correlated
26 ZNF793 17 99.0 Highly correlated
27 ZNF264 15 99.0 Highly correlated
28 ZNF534 14 19.6 Weakly correlated
29 ZNF554 14 99.0 Highly correlated
30 ZNF92 14 28.9 Weakly correlated
31 ZFP30 13 99.0 Highly correlated
32 ZNF610 13 28.9 Weakly correlated
33 ZNF133 12 99.0 Highly correlated
34 ZNF471 12 94.0 Moderately correlated
35 ZNF589 12 28.9 Weakly correlated
36 ZNF597 12 94.0 Moderately correlated
37 ZNF479 11 6.4 Weakly correlated
38 ZKSCAN8 10 160.0 Weakly correlated
39 ZNF197 10 99.0 Highly correlated
40 ZNF585B 10 99.0 Highly correlated
41 ZNF251 9 94.0 Moderately correlated
42 ZNF257 9 0.0 Weakly correlated
43 ZNF585A 9 99.0 Highly correlated
44 ZNF75D 9 94.0 Moderately correlated
45 ZNF568 8 99.0 Highly correlated
46 ZNF140 7 99.0 Highly correlated
47 ZNF584 7 99.0 Highly correlated
48 ZNF26 6 99.0 Highly correlated
49 ZNF490 6 43.0 Weakly correlated
50 ZNF506 6 28.9 Weakly correlated
51 ZFP57 5 87.0 Moderately correlated
52 ZNF253 5 19.6 Weakly correlated
53 ZNF486 5 8.6 Weakly correlated
54 ZNF528 5 43.0 Weakly correlated
55 ZNF701 5 28.9 Weakly correlated
56 ZNF8 5 99.0 Highly correlated
57 ZKSCAN5 4 160.0 Weakly correlated
58 ZNF274 4 99.0 Highly correlated
59 ZNF441 4 43.0 Weakly correlated
60 ZNF549 4 87.0 Moderately correlated
61 ZNF563 4 28.9 Weakly correlated
62 ZNF675 4 8.6 Weakly correlated
63 ZNF677 4 99.0 Highly correlated
64 ZNF707 4 74.0 Weakly correlated
65 ZNF792 4 94.0 Moderately correlated
66 ZNF823 4 43.0 Weakly correlated
67 PRDM9 3 0.0 Weakly correlated
68 ZNF287 3 99.0 Highly correlated
69 ZNF331 3 94.0 Moderately correlated
70 ZNF347 3 43.0 Weakly correlated
71 ZNF41 3 99.0 Highly correlated
72 ZNF44 3 43.0 Weakly correlated
73 ZNF485 3 94.0 Moderately correlated
74 ZNF547 3 74.0 Weakly correlated
75 ZNF641 3 99.0 Highly correlated
76 ZNF735 3 28.9 Weakly correlated
77 ZNF778 3 74.0 Weakly correlated
78 ZNF10 2 99.0 Highly correlated
79 ZNF132 2 94.0 Moderately correlated
80 ZNF160 2 74.0 Weakly correlated
81 ZNF17 2 69.0 Weakly correlated
82 ZNF224 2 69.0 Weakly correlated
83 ZNF225 2 74.0 Weakly correlated
84 ZNF248 2 99.0 Highly correlated
85 ZNF284 2 43.0 Weakly correlated
86 ZNF337 2 43.0 Weakly correlated
87 ZNF33A 2 99.0 Highly correlated
88 ZNF34 2 99.0 Highly correlated
89 ZNF418 2 43.0 Weakly correlated
90 ZNF429 2 28.9 Weakly correlated
91 ZNF510 2 99.0 Highly correlated
92 ZNF567 2 99.0 Highly correlated
93 ZNF671 2 94.0 Moderately correlated
94 ZNF674 2 99.0 Highly correlated
95 ZNF736 2 43.0 Weakly correlated
96 ZNF84 2 99.0 Highly correlated
97 ZNF85 2 28.9 Weakly correlated
98 ZFP14 1 99.0 Highly correlated
99 ZNF100 1 28.9 Weakly correlated
100 ZNF12 1 99.0 Highly correlated
101 ZNF135 1 94.0 Moderately correlated
102 ZNF141 1 43.0 Weakly correlated
103 ZNF202 1 160.0 Weakly correlated
104 ZNF211 1 94.0 Moderately correlated
105 ZNF222 1 43.0 Weakly correlated
106 ZNF230 1 28.9 Weakly correlated
107 ZNF250 1 99.0 Highly correlated
108 ZNF282 1 319.0 Weakly correlated
109 ZNF320 1 28.9 Weakly correlated
110 ZNF425 1 94.0 Moderately correlated
111 ZNF454 1 99.0 Highly correlated
112 ZNF468 1 28.9 Weakly correlated
113 ZNF483 1 99.0 Highly correlated
114 ZNF519 1 19.6 Weakly correlated
115 ZNF560 1 43.0 Weakly correlated
116 ZNF578 1 15.2 Weakly correlated
117 ZNF583 1 99.0 Highly correlated
118 ZNF613 1 99.0 Highly correlated
119 ZNF667 1 99.0 Highly correlated
120 ZNF681 1 28.9 Weakly correlated
121 ZNF695 1 28.9 Weakly correlated
122 ZNF730 1 19.6 Weakly correlated
123 ZNF75A 1 94.0 Moderately correlated
124 ZNF786 1 99.0 Highly correlated
125 ZNF879 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 53 99.0 Highly correlated
2 ZIM3 39 87.0 Moderately correlated
3 ZFP28 17 99.0 Highly correlated
4 ZFP82 16 99.0 Highly correlated
5 ZNF136 15 74.0 Weakly correlated
6 ZNF723 14 15.2 Weakly correlated
7 ZNF382 12 99.0 Highly correlated
8 ZNF793 11 99.0 Highly correlated
9 ZNF354A 11 99.0 Highly correlated
10 ZNF471 10 94.0 Moderately correlated
11 ZNF101 8 43.0 Weakly correlated
12 ZNF680 7 28.9 Weakly correlated
13 ZNF534 7 19.6 Weakly correlated
14 ZNF766 7 43.0 Weakly correlated
15 ZNF264 7 99.0 Highly correlated
16 ZNF133 7 99.0 Highly correlated
17 ZNF705D 6 28.9 Weakly correlated
18 ZNF75D 5 94.0 Moderately correlated
19 ZNF490 5 43.0 Weakly correlated
20 ZNF585B 4 99.0 Highly correlated
21 ZNF585A 4 99.0 Highly correlated
22 ZNF705B 4 28.9 Weakly correlated
23 ZNF140 4 99.0 Highly correlated
24 ZNF677 3 99.0 Highly correlated
25 ZNF287 3 99.0 Highly correlated
26 ZNF257 3 0.0 Weakly correlated
27 ZNF675 3 8.6 Weakly correlated
28 ZNF563 2 28.9 Weakly correlated
29 ZNF182 2 99.0 Highly correlated
30 ZNF823 2 43.0 Weakly correlated
31 ZFP57 2 87.0 Moderately correlated
32 ZNF34 2 99.0 Highly correlated
33 ZNF597 2 94.0 Moderately correlated
34 ZNF44 2 43.0 Weakly correlated
35 ZNF554 2 99.0 Highly correlated
36 ZNF707 2 74.0 Weakly correlated
37 ZNF589 2 28.9 Weakly correlated
38 ZNF225 2 74.0 Weakly correlated
39 ZNF251 2 94.0 Moderately correlated
40 ZNF549 2 87.0 Moderately correlated
41 ZNF263 2 180.0 Weakly correlated
42 ZNF479 2 6.4 Weakly correlated
43 ZNF485 1 94.0 Moderately correlated
44 ZFP14 1 99.0 Highly correlated
45 ZNF610 1 28.9 Weakly correlated
46 ZNF671 1 94.0 Moderately correlated
47 ZNF160 1 74.0 Weakly correlated
48 ZNF2 1 99.0 Highly correlated
49 ZNF584 1 99.0 Highly correlated
50 ZNF347 1 43.0 Weakly correlated
51 ZNF506 1 28.9 Weakly correlated
52 ZNF528 1 43.0 Weakly correlated
53 ZNF282 1 319.0 Weakly correlated
54 ZFP37 1 99.0 Highly correlated
55 ZNF558 1 99.0 Highly correlated
56 ZNF679 1 28.9 Weakly correlated
57 ZNF92 1 28.9 Weakly correlated
58 ZNF33A 1 99.0 Highly correlated
59 ZNF695 1 28.9 Weakly correlated
60 ZNF429 1 28.9 Weakly correlated
61 ZNF84 1 99.0 Highly correlated
62 ZNF792 1 94.0 Moderately correlated
63 ZNF17 1 69.0 Weakly correlated
64 ZNF197 1 99.0 Highly correlated
65 ZNF248 1 99.0 Highly correlated
66 ZNF41 1 99.0 Highly correlated
67 ZNF132 1 94.0 Moderately correlated
68 ZNF568 1 99.0 Highly correlated
69 ZNF10 1 99.0 Highly correlated
70 ZKSCAN5 1 160.0 Weakly correlated
71 ZNF141 1 43.0 Weakly correlated
72 ZNF175 1 94.0 Moderately correlated
73 ZNF211 1 94.0 Moderately correlated
74 ZNF641 1 99.0 Highly correlated
75 ZKSCAN8 1 160.0 Weakly correlated
76 ZNF253 1 19.6 Weakly correlated
77 ZNF324 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Highly correlated
2 ZNF133 99.0 Highly correlated
3 ZNF136 74.0 Weakly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF382 99.0 Highly correlated
6 ZNF471 94.0 Moderately correlated
7 ZNF680 28.9 Weakly correlated
8 ZNF793 99.0 Highly correlated