ZRdb KZFP & Repeats
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LINE_L1MEH_5END

  • Name
    L1MEH_5END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000312
Description :

Contains a full gag ORF: (~735-1661). Substitution level in thereconstructed laurasiatherian genome is 32%.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
taggggcttccggttcctgncaagatggcgaactagcacgggctgctggctccctcccccaaaatcaaccctggagaaactacagaagcgagagggaagcatggattcgaggaactaacataaaaactgtgagaaacccctggggagacngaaggctgtcttgaactggcgtgtgtgagatggtggtggcgtncggggagaggcngcggcagccgaagcggcagtgagaggacgggttggaggaaagcttttaagttctgctcttgcctctcccccgcattgccttgggacaatcattgcctgccccttcgccgcagaaatcggcagcagcagcccagaccgccggtgcaggtgtcctcgggagtaanatcagggcagcgcaaaagccctgctggggtgaggagctgatgaaaacaggtgcggactgaccagctgccctcgggcattcactcctccaccccctcccctccaaacccccagggctggtggattacaacctaaggagaccgcctcctcccagtgctgcttctccctaagagtttaaaggtgaaaccctgaccagaggagttgcctggtggagtgacagcgaacggtggtgcctggggctctccgccctggggctcatcccctcccctctccttaaactcaccgggactgacacagactagggcctggccttcggcccttccccaatacacattaccagacagagtagctgatacccccaggggaanatgagctcacaggccaaaataacnagacacctgaggagtacaactacttcaaaagaaagacaacaaactgaacaacatataccatctgaagcagaattattggaacagacggaccaagaatttaaaataagcataataaatatnctcaaagagataagggaagatattagcaatatgaagcaagaacaagaaatcataaaaaagaaccaagtggaaatattaggtatgaaaaatataatagttgaaataaagaacncaatagatgggataaatagcagaatggatacagctgaagaacgaattagtgagctggaagatcagattgaggaactctcccagaaggcagcaggaaaggataaagagatagaaaatataaaagaaaagctaagagatatggaggatagaagtagaagtgccaacatccgnataataggagtcccagaaggagaggaaaaagaaaatggagagaaggaaatatttgaagaaataatggaganaaatttcccagaattaaagaaagatgaaagacctcagattgaaagggctcatagagtgccaaacagganagataaaagaaaacccacacctagacacattatagtgaaatttaagaacatcaaagacaaagagaaaattctaaaagcttccagagagaaaagacagatcacctacaaaggaacaagaatcagattgacatcagacttctcaacagcaacactggatgcaagaagacaatggagtaatattttcaaagtattgaaggaaaanaactttgaacctagaattttatatccagccaaactgtcattcaaatgtgagggcgnaataaaaatattctcaggcatacaaggcctcagaaggtttgccacacaaagacccacnttgaaaacactcttggaggaagtacttcaaanagaagaaaaataaatccaggagatgcatggagatgcaggaaggaatgaagagcaacagaaagggtaaatatcttggtaaatttaaataaatattgactgtataaaacaaaaanaaaaangnattatatccataataacccagaactaaaattctagacaatatcaacatgatagggaagagagggnaaatggagtgagagcgtgctaaagtncttgtcttattngggaagaggtanagtattaatttaattagantttaataagtcaaggatgnatgttataatctttagggcaaccaccanaagaataaaaatagaatgtataacttttaaaccagcagaaagaaaatttaaatttcgattnatccaaaggaaagcaggaaaaaaggaaaaaanagaaagaaaaacagatgggacaaatagaaaacaaataataagatggcagaaataagtccnaatatancagtaattacaataaatgtaaatgggttaaactcaccaattaaaagacagagattntcagattggattnaaaaacaaaatccaacaatatgctgtctacaagagacacacttaaaacanaaggac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 71 99.0 Highly correlated
2 ZNF317 59 99.0 Highly correlated
3 ZNF263 47 180.0 Weakly correlated
4 ZNF766 28 43.0 Weakly correlated
5 ZIM3 25 87.0 Moderately correlated
6 ZNF394 23 99.0 Highly correlated
7 ZNF793 21 99.0 Highly correlated
8 ZNF287 19 99.0 Highly correlated
9 ZNF680 16 28.9 Weakly correlated
10 ZNF723 14 15.2 Weakly correlated
11 ZNF197 14 99.0 Highly correlated
12 ZNF534 13 19.6 Weakly correlated
13 ZFP37 13 99.0 Highly correlated
14 ZKSCAN1 12 160.0 Weakly correlated
15 ZNF354A 12 99.0 Highly correlated
16 ZNF2 12 99.0 Highly correlated
17 ZNF175 12 94.0 Moderately correlated
18 ZNF589 12 28.9 Weakly correlated
19 ZNF554 11 99.0 Highly correlated
20 ZNF558 11 99.0 Highly correlated
21 ZNF679 11 28.9 Weakly correlated
22 ZNF705D 10 28.9 Weakly correlated
23 ZNF705B 10 28.9 Weakly correlated
24 ZNF257 9 0.0 Weakly correlated
25 ZNF701 9 28.9 Weakly correlated
26 ZKSCAN8 8 160.0 Weakly correlated
27 ZNF101 8 43.0 Weakly correlated
28 ZNF479 7 6.4 Weakly correlated
29 ZNF251 7 94.0 Moderately correlated
30 ZNF18 7 160.0 Weakly correlated
31 ZFP69B 6 99.0 Highly correlated
32 ZNF92 6 28.9 Weakly correlated
33 ZNF584 6 99.0 Highly correlated
34 ZFP28 5 99.0 Highly correlated
35 ZNF133 5 99.0 Highly correlated
36 ZNF320 5 28.9 Weakly correlated
37 ZNF506 4 28.9 Weakly correlated
38 ZNF486 4 8.6 Weakly correlated
39 ZNF485 4 94.0 Moderately correlated
40 ZNF160 4 74.0 Weakly correlated
41 ZFP82 4 99.0 Highly correlated
42 ZNF735 3 28.9 Weakly correlated
43 ZNF100 3 28.9 Weakly correlated
44 ZNF26 3 99.0 Highly correlated
45 ZNF547 3 74.0 Weakly correlated
46 ZNF441 3 43.0 Weakly correlated
47 ZNF573 3 94.0 Moderately correlated
48 ZNF140 3 99.0 Highly correlated
49 ZNF331 3 94.0 Moderately correlated
50 ZNF610 2 28.9 Weakly correlated
51 ZNF695 2 28.9 Weakly correlated
52 ZFP57 2 87.0 Moderately correlated
53 ZNF585B 2 99.0 Highly correlated
54 ZNF528 2 43.0 Weakly correlated
55 ZNF248 2 99.0 Highly correlated
56 ZNF585A 2 99.0 Highly correlated
57 ZNF471 2 94.0 Moderately correlated
58 ZNF274 2 99.0 Highly correlated
59 ZNF284 2 43.0 Weakly correlated
60 ZNF182 2 99.0 Highly correlated
61 ZNF141 2 43.0 Weakly correlated
62 ZNF34 2 99.0 Highly correlated
63 ZNF350 2 99.0 Highly correlated
64 ZNF75D 2 94.0 Moderately correlated
65 ZNF445 2 99.0 Highly correlated
66 ZNF44 2 43.0 Weakly correlated
67 ZNF736 1 43.0 Weakly correlated
68 ZNF730 1 19.6 Weakly correlated
69 ZNF778 1 74.0 Weakly correlated
70 ZNF84 1 99.0 Highly correlated
71 ZNF799 1 43.0 Weakly correlated
72 ZNF707 1 74.0 Weakly correlated
73 ZNF823 1 43.0 Weakly correlated
74 ZNF93 1 8.6 Weakly correlated
75 ZNF43 1 43.0 Weakly correlated
76 ZFP30 1 99.0 Highly correlated
77 ZNF136 1 74.0 Weakly correlated
78 ZNF184 1 99.0 Highly correlated
79 ZNF230 1 28.9 Weakly correlated
80 ZNF282 1 319.0 Weakly correlated
81 ZNF28 1 28.9 Weakly correlated
82 ZNF304 1 99.0 Highly correlated
83 ZNF334 1 99.0 Highly correlated
84 ZNF418 1 43.0 Weakly correlated
85 ZNF425 1 94.0 Moderately correlated
86 ZNF675 1 8.6 Weakly correlated
87 ZNF440 1 28.9 Weakly correlated
88 ZNF490 1 43.0 Weakly correlated
89 ZNF510 1 99.0 Highly correlated
90 ZNF563 1 28.9 Weakly correlated
91 ZNF583 1 99.0 Highly correlated
92 ZNF586 1 43.0 Weakly correlated
93 ZNF597 1 94.0 Moderately correlated
94 ZNF641 1 99.0 Highly correlated
95 ZNF674 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF287 18 99.0 Highly correlated
2 ZNF317 10 99.0 Highly correlated
3 ZIM3 10 87.0 Moderately correlated
4 ZNF793 9 99.0 Highly correlated
5 ZNF382 9 99.0 Highly correlated
6 ZNF534 9 19.6 Weakly correlated
7 ZNF354A 7 99.0 Highly correlated
8 ZNF263 7 180.0 Weakly correlated
9 ZNF479 5 6.4 Weakly correlated
10 ZNF723 5 15.2 Weakly correlated
11 ZNF101 5 43.0 Weakly correlated
12 ZNF257 5 0.0 Weakly correlated
13 ZNF766 5 43.0 Weakly correlated
14 ZNF554 4 99.0 Highly correlated
15 ZNF680 4 28.9 Weakly correlated
16 ZNF558 4 99.0 Highly correlated
17 ZNF197 3 99.0 Highly correlated
18 ZFP82 3 99.0 Highly correlated
19 ZNF133 2 99.0 Highly correlated
20 ZNF585A 2 99.0 Highly correlated
21 ZNF705D 2 28.9 Weakly correlated
22 ZNF506 2 28.9 Weakly correlated
23 ZNF701 2 28.9 Weakly correlated
24 ZNF573 2 94.0 Moderately correlated
25 ZNF735 2 28.9 Weakly correlated
26 ZNF248 2 99.0 Highly correlated
27 ZNF485 2 94.0 Moderately correlated
28 ZNF140 2 99.0 Highly correlated
29 ZNF705B 1 28.9 Weakly correlated
30 ZNF440 1 28.9 Weakly correlated
31 ZNF331 1 94.0 Moderately correlated
32 ZNF823 1 43.0 Weakly correlated
33 ZNF18 1 160.0 Weakly correlated
34 ZKSCAN8 1 160.0 Weakly correlated
35 ZNF93 1 8.6 Weakly correlated
36 ZNF674 1 99.0 Highly correlated
37 ZFP28 1 99.0 Highly correlated
38 ZNF585B 1 99.0 Highly correlated
39 ZNF486 1 8.6 Weakly correlated
40 ZNF320 1 28.9 Weakly correlated
41 ZNF799 1 43.0 Weakly correlated
42 ZNF75D 1 94.0 Moderately correlated
43 ZNF160 1 74.0 Weakly correlated
44 ZNF675 1 8.6 Weakly correlated
45 ZNF44 1 43.0 Weakly correlated
46 ZNF695 1 28.9 Weakly correlated
47 ZNF34 1 99.0 Highly correlated
48 ZNF175 1 94.0 Moderately correlated
49 ZNF350 1 99.0 Highly correlated
50 ZNF26 1 99.0 Highly correlated
51 ZNF100 1 28.9 Weakly correlated
52 ZFP57 1 87.0 Moderately correlated
53 ZFP37 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF287 99.0 Highly correlated
2 ZNF317 99.0 Highly correlated
3 ZNF793 99.0 Highly correlated