ZRdb KZFP & Repeats
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LINE_L1MEG_5END

  • Name
    L1MEG_5END
  • Repbase
    L1MEg_5end
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000311
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttccgcttccggcaatggcggactagnttgttcagaccaaccctcccgctgagaacaactagaaaagctggacaaaatataaaaaacatctgtttgaaggcatcggagagctaccaaggcagcgaggaatttgaggggccaagatcccggagagaagggaagcccagagaggtgagcccgacattcggngccgcttttcccctcgaggcatttgccgattccgaaagcggcggctgagaggctgagaagctgagcagagctttcggcagtctcacggggctggggagacaaaaattggagttcagggcccgccaaggaggaggggccctggtaaaccccagctttcagttgggaccccgaagggctacaccctaggagtaagggcgaaccggaaatagaccagccctcacaaagactgaagcccagcttcgaatcanctcaatccctgattggattaaggtgatctgattgctagtgcccctagctgcctgccagaagcaaaagtaaatcctctctggaggaagataacatcatccagagcctcaaattatctctacaatttttcatatacaatgtccggcattcaatcaaaaatnaccaggcatacnaggagacaagacaaatgaccgaaaancaagagaaaaacagacaatagaaacagacccacaggngatccagatattggagttatcagacacggactttaaaataactatgattaatatgttcaagaaaataaangacaagatggagaatttcagcagagaactggaanctataaaaaagaatcaaatggaaattctagaactgaaaaatatacaataactgaaattaagaactcaatagatgggtttaacagcagattagacacagcngaagagaggattagtgaactggaagataggtcagnagaaaatatccagactgaagcacagagaganaaaaaaatggaaaatacagaaaagagcgtaagagacatatgggacacggtgaaaaggtctaacatacgtgtaattggagtcccagaaggagaggagagagagaatggggcagaagcaatatttgaagagataatggccgagaattttccaaaactgatgaaagacatcaanccacagattcaagaagctctacgaaccccaagcaggataaatacaaagaaaaccacacctaggcacatcatagtaaaactgctgaaaaccaaagacaaagagaaaatcttaaaagcagccagagaaaaaagacacattaccttcaaaggagcaacaataagactgacagctgacttctcaacagaaacaatggaagccagaagacaatggaatgacatctttaaagtgctgaaagaaaataactgccaacctagaattctatacccaggaaaatatccttcaaaaatgaaggcgaaataaagacattttcagacaaacaaaaactgagagaattcgtcaccagcagacctgcactaaaagaaatactaaaggaagttcttcaggcagaaggaaaatgatcccagatggaagcacggaaatgcaggaaggaatgaagagcaacggaaagggtaaatatgtgggtaaatctaaatgaatattgactgtataaaacaataataataatgtcttgtggggtttaaaatatatatagaattaaaatacatgacaacaatagcacaaaagggaagagagggtaaatggagttaaagtgttctaaggtccttgcattgtccgggaagtggtaaagtactaatttatattagactttaataagtcaaggatgcatgttgtaatctctagggtaaccactaaaagaatagtaaaagaatgtataactaacaagctaatagagagggaaaatggaataataaaaatattcgattaatccaaaagaaggcaagaaaaaaggaaaaaanagaaagaaaaacagatgggacaaatagaaaacaaatagtaagatggtagatttaaacccaaatatatcagtaattacattaaatgtaaatggactaaatactccaattnaaaganaaagattgtcagactggatttaaaaacaaaacccaactatatgctgcttacaagagacacaccttaaatataaggac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 1109 99.0 Highly correlated
2 ZNF382 826 99.0 Highly correlated
3 ZNF558 448 99.0 Highly correlated
4 ZIM3 260 87.0 Moderately correlated
5 ZNF793 220 99.0 Highly correlated
6 ZNF766 172 43.0 Weakly correlated
7 ZNF133 159 99.0 Highly correlated
8 ZNF567 158 99.0 Highly correlated
9 ZNF394 155 99.0 Highly correlated
10 ZNF680 137 28.9 Weakly correlated
11 ZFP30 127 99.0 Highly correlated
12 ZNF136 125 74.0 Weakly correlated
13 ZNF26 105 99.0 Highly correlated
14 ZNF92 101 28.9 Weakly correlated
15 ZNF679 96 28.9 Weakly correlated
16 ZNF705B 91 28.9 Weakly correlated
17 ZNF610 87 28.9 Weakly correlated
18 ZFP28 84 99.0 Highly correlated
19 ZFP82 81 99.0 Highly correlated
20 ZNF2 81 99.0 Highly correlated
21 ZNF182 79 99.0 Highly correlated
22 ZNF585A 79 99.0 Highly correlated
23 ZNF324 77 99.0 Highly correlated
24 ZFP37 70 99.0 Highly correlated
25 ZNF263 64 180.0 Weakly correlated
26 ZNF723 64 15.2 Weakly correlated
27 ZNF589 60 28.9 Weakly correlated
28 ZNF705D 58 28.9 Weakly correlated
29 ZNF175 55 94.0 Moderately correlated
30 ZNF197 51 99.0 Highly correlated
31 ZNF479 51 6.4 Weakly correlated
32 ZNF534 48 19.6 Weakly correlated
33 ZFP69B 43 99.0 Highly correlated
34 ZNF490 43 43.0 Weakly correlated
35 ZNF101 42 43.0 Weakly correlated
36 ZNF251 42 94.0 Moderately correlated
37 ZKSCAN1 41 160.0 Weakly correlated
38 ZNF18 41 160.0 Weakly correlated
39 ZKSCAN8 38 160.0 Weakly correlated
40 ZNF248 33 99.0 Highly correlated
41 ZNF160 32 74.0 Weakly correlated
42 ZNF554 32 99.0 Highly correlated
43 ZNF584 28 99.0 Highly correlated
44 ZNF140 27 99.0 Highly correlated
45 ZNF354A 27 99.0 Highly correlated
46 ZNF41 25 99.0 Highly correlated
47 ZNF441 24 43.0 Weakly correlated
48 ZNF547 24 74.0 Weakly correlated
49 ZNF585B 23 99.0 Highly correlated
50 ZNF75D 23 94.0 Moderately correlated
51 ZNF701 22 28.9 Weakly correlated
52 ZNF8 21 99.0 Highly correlated
53 ZNF274 20 99.0 Highly correlated
54 ZNF33A 20 99.0 Highly correlated
55 ZNF682 20 28.9 Weakly correlated
56 ZNF320 19 28.9 Weakly correlated
57 ZNF257 18 0.0 Weakly correlated
58 ZNF287 18 99.0 Highly correlated
59 ZNF471 18 94.0 Moderately correlated
60 ZNF486 17 8.6 Weakly correlated
61 ZNF549 17 87.0 Moderately correlated
62 ZNF597 17 94.0 Moderately correlated
63 ZNF641 17 99.0 Highly correlated
64 ZNF169 16 94.0 Moderately correlated
65 ZNF519 16 19.6 Weakly correlated
66 ZNF202 15 160.0 Weakly correlated
67 ZNF735 14 28.9 Weakly correlated
68 ZNF485 13 94.0 Moderately correlated
69 ZNF528 13 43.0 Weakly correlated
70 ZNF506 12 28.9 Weakly correlated
71 ZNF677 12 99.0 Highly correlated
72 ZFP57 10 87.0 Moderately correlated
73 ZNF28 10 28.9 Weakly correlated
74 ZNF350 10 99.0 Highly correlated
75 ZNF707 10 74.0 Weakly correlated
76 ZNF823 10 43.0 Weakly correlated
77 ZNF84 9 99.0 Highly correlated
78 ZNF695 8 28.9 Weakly correlated
79 ZNF282 7 319.0 Weakly correlated
80 ZNF30 7 94.0 Moderately correlated
81 ZNF331 7 94.0 Moderately correlated
82 ZNF230 6 28.9 Weakly correlated
83 ZNF264 6 99.0 Highly correlated
84 ZNF284 6 43.0 Weakly correlated
85 ZNF429 6 28.9 Weakly correlated
86 ZNF792 6 94.0 Moderately correlated
87 ZNF808 6 19.6 Weakly correlated
88 ZNF879 6 99.0 Highly correlated
89 ZNF211 5 94.0 Moderately correlated
90 ZNF440 5 28.9 Weakly correlated
91 ZNF560 5 43.0 Weakly correlated
92 ZNF563 5 28.9 Weakly correlated
93 ZNF583 5 99.0 Highly correlated
94 ZNF605 5 99.0 Highly correlated
95 ZNF674 5 99.0 Highly correlated
96 ZNF786 5 99.0 Highly correlated
97 ZNF141 4 43.0 Weakly correlated
98 ZNF273 4 28.9 Weakly correlated
99 ZNF334 4 99.0 Highly correlated
100 ZNF425 4 94.0 Moderately correlated
101 ZNF44 4 43.0 Weakly correlated
102 ZNF510 4 99.0 Highly correlated
103 ZNF586 4 43.0 Weakly correlated
104 ZNF675 4 8.6 Weakly correlated
105 ZNF730 4 19.6 Weakly correlated
106 ZNF780A 4 43.0 Weakly correlated
107 ZFP69 3 99.0 Highly correlated
108 ZFP90 3 99.0 Highly correlated
109 ZKSCAN5 3 160.0 Weakly correlated
110 ZNF10 3 99.0 Highly correlated
111 ZNF224 3 69.0 Weakly correlated
112 ZNF347 3 43.0 Weakly correlated
113 ZNF468 3 28.9 Weakly correlated
114 ZNF544 3 0.0 Weakly correlated
115 ZNF671 3 94.0 Moderately correlated
116 ZNF75A 3 94.0 Moderately correlated
117 ZNF816 3 28.9 Weakly correlated
118 ZNF878 3 43.0 Weakly correlated
119 ZNF93 3 8.6 Weakly correlated
120 ZKSCAN4 2 99.0 Highly correlated
121 ZNF135 2 94.0 Moderately correlated
122 ZNF157 2 99.0 Highly correlated
123 ZNF189 2 99.0 Highly correlated
124 ZNF250 2 99.0 Highly correlated
125 ZNF253 2 19.6 Weakly correlated
126 ZNF454 2 99.0 Highly correlated
127 ZNF483 2 99.0 Highly correlated
128 ZNF487 2 28.9 Weakly correlated
129 ZNF559 2 74.0 Weakly correlated
130 ZNF561 2 43.0 Weakly correlated
131 ZNF613 2 99.0 Highly correlated
132 ZNF716 2 19.6 Weakly correlated
133 ZNF727 2 19.6 Weakly correlated
134 ZNF778 2 74.0 Weakly correlated
135 ZNF7 2 99.0 Highly correlated
136 ZNF845 2 28.9 Weakly correlated
137 ZNF91 2 6.0 Weakly correlated
138 ZFP14 1 99.0 Highly correlated
139 ZFP92 1 99.0 Highly correlated
140 ZIK1 1 87.0 Moderately correlated
141 ZNF17 1 69.0 Weakly correlated
142 ZNF184 1 99.0 Highly correlated
143 ZNF20 1 43.0 Weakly correlated
144 ZNF215 1 99.0 Highly correlated
145 ZNF233 1 99.0 Highly correlated
146 ZNF256 1 74.0 Weakly correlated
147 ZNF337 1 43.0 Weakly correlated
148 ZNF33B 1 99.0 Highly correlated
149 ZNF343 1 74.0 Weakly correlated
150 ZNF354C 1 99.0 Highly correlated
151 ZNF383 1 99.0 Highly correlated
152 ZNF439 1 8.6 Weakly correlated
153 ZNF43 1 43.0 Weakly correlated
154 ZNF445 1 99.0 Highly correlated
155 ZNF514 1 94.0 Moderately correlated
156 ZNF550 1 94.0 Moderately correlated
157 ZNF556 1 94.0 Moderately correlated
158 ZNF557 1 15.2 Weakly correlated
159 ZNF568 1 99.0 Highly correlated
160 ZNF570 1 99.0 Highly correlated
161 ZNF573 1 94.0 Moderately correlated
162 ZNF596 1 94.0 Moderately correlated
163 ZNF614 1 99.0 Highly correlated
164 ZNF626 1 0.0 Weakly correlated
165 ZNF627 1 74.0 Weakly correlated
166 ZNF658 1 99.0 Highly correlated
167 ZNF669 1 43.0 Weakly correlated
168 ZNF736 1 43.0 Weakly correlated
169 ZNF789 1 99.0 Highly correlated
170 ZNF81 1 99.0 Highly correlated
171 ZNF85 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 257 99.0 Highly correlated
2 ZNF558 168 99.0 Highly correlated
3 ZIM3 144 87.0 Moderately correlated
4 ZNF567 128 99.0 Highly correlated
5 ZNF133 123 99.0 Highly correlated
6 ZNF136 97 74.0 Weakly correlated
7 ZNF793 95 99.0 Highly correlated
8 ZNF382 85 99.0 Highly correlated
9 ZNF26 84 99.0 Highly correlated
10 ZFP82 75 99.0 Highly correlated
11 ZNF585A 41 99.0 Highly correlated
12 ZFP28 37 99.0 Highly correlated
13 ZNF680 32 28.9 Weakly correlated
14 ZNF490 28 43.0 Weakly correlated
15 ZNF723 27 15.2 Weakly correlated
16 ZNF160 26 74.0 Weakly correlated
17 ZNF534 25 19.6 Weakly correlated
18 ZNF101 23 43.0 Weakly correlated
19 ZNF248 23 99.0 Highly correlated
20 ZNF766 22 43.0 Weakly correlated
21 ZNF479 21 6.4 Weakly correlated
22 ZNF705D 19 28.9 Weakly correlated
23 ZNF354A 18 99.0 Highly correlated
24 ZNF705B 18 28.9 Weakly correlated
25 ZNF610 16 28.9 Weakly correlated
26 ZNF41 15 99.0 Highly correlated
27 ZNF263 13 180.0 Weakly correlated
28 ZNF140 12 99.0 Highly correlated
29 ZNF735 12 28.9 Weakly correlated
30 ZNF287 10 99.0 Highly correlated
31 ZNF75D 10 94.0 Moderately correlated
32 ZNF641 9 99.0 Highly correlated
33 ZNF197 8 99.0 Highly correlated
34 ZNF202 8 160.0 Weakly correlated
35 ZNF33A 8 99.0 Highly correlated
36 ZNF701 8 28.9 Weakly correlated
37 ZNF471 7 94.0 Moderately correlated
38 ZNF92 7 28.9 Weakly correlated
39 ZNF257 7 0.0 Weakly correlated
40 ZNF485 7 94.0 Moderately correlated
41 ZNF679 7 28.9 Weakly correlated
42 ZNF584 6 99.0 Highly correlated
43 ZNF677 6 99.0 Highly correlated
44 ZNF879 6 99.0 Highly correlated
45 ZNF589 6 28.9 Weakly correlated
46 ZNF251 6 94.0 Moderately correlated
47 ZNF169 5 94.0 Moderately correlated
48 ZNF554 5 99.0 Highly correlated
49 ZNF394 4 99.0 Highly correlated
50 ZNF350 4 99.0 Highly correlated
51 ZNF695 4 28.9 Weakly correlated
52 ZNF597 4 94.0 Moderately correlated
53 ZNF175 4 94.0 Moderately correlated
54 ZNF549 4 87.0 Moderately correlated
55 ZNF585B 4 99.0 Highly correlated
56 ZNF84 4 99.0 Highly correlated
57 ZNF528 4 43.0 Weakly correlated
58 ZFP37 3 99.0 Highly correlated
59 ZFP90 3 99.0 Highly correlated
60 ZNF10 3 99.0 Highly correlated
61 ZNF675 3 8.6 Weakly correlated
62 ZNF823 3 43.0 Weakly correlated
63 ZNF44 3 43.0 Weakly correlated
64 ZNF792 3 94.0 Moderately correlated
65 ZNF816 3 28.9 Weakly correlated
66 ZFP57 2 87.0 Moderately correlated
67 ZFP69B 2 99.0 Highly correlated
68 ZKSCAN5 2 160.0 Weakly correlated
69 ZNF141 2 43.0 Weakly correlated
70 ZNF189 2 99.0 Highly correlated
71 ZNF274 2 99.0 Highly correlated
72 ZNF324 2 99.0 Highly correlated
73 ZNF506 2 28.9 Weakly correlated
74 ZNF674 2 99.0 Highly correlated
75 ZNF707 2 74.0 Weakly correlated
76 ZNF273 2 28.9 Weakly correlated
77 ZNF429 2 28.9 Weakly correlated
78 ZNF682 2 28.9 Weakly correlated
79 ZNF716 2 19.6 Weakly correlated
80 ZNF320 2 28.9 Weakly correlated
81 ZNF440 2 28.9 Weakly correlated
82 ZNF182 2 99.0 Highly correlated
83 ZNF264 2 99.0 Highly correlated
84 ZKSCAN8 2 160.0 Weakly correlated
85 ZFP69 1 99.0 Highly correlated
86 ZIK1 1 87.0 Moderately correlated
87 ZNF550 1 94.0 Moderately correlated
88 ZNF605 1 99.0 Highly correlated
89 ZNF626 1 0.0 Weakly correlated
90 ZFP30 1 99.0 Highly correlated
91 ZNF28 1 28.9 Weakly correlated
92 ZNF573 1 94.0 Moderately correlated
93 ZNF33B 1 99.0 Highly correlated
94 ZNF510 1 99.0 Highly correlated
95 ZNF8 1 99.0 Highly correlated
96 ZNF331 1 94.0 Moderately correlated
97 ZNF343 1 74.0 Weakly correlated
98 ZNF347 1 43.0 Weakly correlated
99 ZNF671 1 94.0 Moderately correlated
100 ZNF780A 1 43.0 Weakly correlated
101 ZNF250 1 99.0 Highly correlated
102 ZNF337 1 43.0 Weakly correlated
103 ZNF18 1 160.0 Weakly correlated
104 ZNF586 1 43.0 Weakly correlated
105 ZNF383 1 99.0 Highly correlated
106 ZNF7 1 99.0 Highly correlated
107 ZNF2 1 99.0 Highly correlated
108 ZNF483 1 99.0 Highly correlated
109 ZNF669 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Highly correlated
2 ZNF133 99.0 Highly correlated
3 ZNF136 74.0 Weakly correlated
4 ZNF248 99.0 Highly correlated
5 ZNF251 94.0 Moderately correlated
6 ZNF257 0.0 Weakly correlated
7 ZNF26 99.0 Highly correlated
8 ZNF287 99.0 Highly correlated
9 ZNF317 99.0 Highly correlated
10 ZNF41 99.0 Highly correlated
11 ZNF490 43.0 Weakly correlated
12 ZNF567 99.0 Highly correlated
13 ZNF584 99.0 Highly correlated
14 ZNF610 28.9 Weakly correlated
15 ZNF680 28.9 Weakly correlated
16 ZNF701 28.9 Weakly correlated
17 ZNF793 99.0 Highly correlated
18 ZNF92 28.9 Weakly correlated