ZRdb KZFP & Repeats
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LINE_L1MEG2_5END

  • Name
    L1MEG2_5END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000310
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggacttccgcttccgggtaggatgtagtaggtcgcggcaggccaacgctcccgctgcaacaactagaaaaagccggataaattacaaaaatcatatttttaaaggcatcggagagctgtggaagcaacgaggactagatgaactaaaattccagagaggggagaaccnttccgaggtgagctgacgatctgcagctgttttttccctgggggcatttgccgattctgggcgcgggctgaggatctgggcttggcccaggcagagggnctctgctgggggaaagagaaaccagcaaagcttttggcggtcgcgcggggctggngtgacaaaattggaaacttgaggggcctcaaacgcatggccggttttccccacgggacatttgctgagttctggggctgcatgcaggaggctgaggagctaggccgaaagcttctgaaaggcagagtgaaatctcccgcagtctcgcggtgcttaggaaacaaagncccgctagagggaggggcctgaaacaaaaccctagggagaatgncctgccanttcgcgttgctgaaacagctgggcaaactgcctcaaacacacggccggtctccccctcaagacatttgccagattttgaagctgcgtggggcgggaggctaaagagctaagctnaaaacctctgaagggcagaactgaatctcccgcagtctttcagggctgaggagacagagacccgccaggctctcaatcaaaagcccgggagggccacgcccgaggaacaggggcgaaccagaggtagactgagtcttactaaaactgcaacccagccccgacccagctcaatccctgattggattgaggtgatcagcccctcaccctatctgcctaacagaggaaagggggaaccctctctggtggaagataacatctggagcctctacggttcttttatacacaatgtccggcatacaataaaaaattactagacatgcgaagaggcaggaaaatgtgaccgata
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 42 99.0 Highly correlated
2 ZNF317 18 99.0 Highly correlated
3 ZNF567 14 99.0 Highly correlated
4 ZIM3 9 87.0 Moderately correlated
5 ZNF558 9 99.0 Highly correlated
6 ZNF394 9 99.0 Highly correlated
7 ZNF680 7 28.9 Weakly correlated
8 ZNF589 7 28.9 Weakly correlated
9 ZFP69B 6 99.0 Highly correlated
10 ZNF26 6 99.0 Highly correlated
11 ZNF101 5 43.0 Weakly correlated
12 ZNF766 5 43.0 Weakly correlated
13 ZNF534 5 19.6 Weakly correlated
14 ZNF610 4 28.9 Weakly correlated
15 ZKSCAN8 4 160.0 Weakly correlated
16 ZNF175 4 94.0 Moderately correlated
17 ZNF18 4 160.0 Weakly correlated
18 ZNF263 4 180.0 Weakly correlated
19 ZNF679 4 28.9 Weakly correlated
20 ZNF2 4 99.0 Highly correlated
21 ZNF584 3 99.0 Highly correlated
22 ZNF324 3 99.0 Highly correlated
23 ZNF547 3 74.0 Weakly correlated
24 ZNF723 3 15.2 Weakly correlated
25 ZNF140 3 99.0 Highly correlated
26 ZNF133 3 99.0 Highly correlated
27 ZKSCAN1 3 160.0 Weakly correlated
28 ZFP37 3 99.0 Highly correlated
29 ZNF707 2 74.0 Weakly correlated
30 ZNF793 2 99.0 Highly correlated
31 ZNF8 2 99.0 Highly correlated
32 ZNF641 2 99.0 Highly correlated
33 ZNF611 2 19.6 Weakly correlated
34 ZNF91 2 6.0 Weakly correlated
35 ZNF585B 2 99.0 Highly correlated
36 ZFP28 2 99.0 Highly correlated
37 ZNF92 2 28.9 Weakly correlated
38 ZKSCAN5 2 160.0 Weakly correlated
39 ZNF490 2 43.0 Weakly correlated
40 ZNF485 2 94.0 Moderately correlated
41 ZNF479 2 6.4 Weakly correlated
42 ZNF197 2 99.0 Highly correlated
43 ZNF264 2 99.0 Highly correlated
44 ZNF554 2 99.0 Highly correlated
45 ZNF354C 1 99.0 Highly correlated
46 ZNF136 1 74.0 Weakly correlated
47 ZNF160 1 74.0 Weakly correlated
48 ZNF878 1 43.0 Weakly correlated
49 ZNF792 1 94.0 Moderately correlated
50 ZNF786 1 99.0 Highly correlated
51 ZNF257 1 0.0 Weakly correlated
52 ZNF274 1 99.0 Highly correlated
53 ZNF705B 1 28.9 Weakly correlated
54 ZNF320 1 28.9 Weakly correlated
55 ZNF677 1 99.0 Highly correlated
56 ZNF658 1 99.0 Highly correlated
57 ZNF429 1 28.9 Weakly correlated
58 ZNF627 1 74.0 Weakly correlated
59 ZNF468 1 28.9 Weakly correlated
60 ZNF597 1 94.0 Moderately correlated
61 ZNF483 1 99.0 Highly correlated
62 ZNF506 1 28.9 Weakly correlated
63 ZNF528 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF567 10 99.0 Highly correlated
2 ZNF382 4 99.0 Highly correlated
3 ZNF26 4 99.0 Highly correlated
4 ZIM3 3 87.0 Moderately correlated
5 ZNF534 3 19.6 Weakly correlated
6 ZNF133 3 99.0 Highly correlated
7 ZNF101 3 43.0 Weakly correlated
8 ZNF485 2 94.0 Moderately correlated
9 ZNF317 2 99.0 Highly correlated
10 ZNF723 2 15.2 Weakly correlated
11 ZKSCAN5 2 160.0 Weakly correlated
12 ZKSCAN8 1 160.0 Weakly correlated
13 ZFP28 1 99.0 Highly correlated
14 ZNF554 1 99.0 Highly correlated
15 ZNF878 1 43.0 Weakly correlated
16 ZNF707 1 74.0 Weakly correlated
17 ZNF506 1 28.9 Weakly correlated
18 ZNF479 1 6.4 Weakly correlated
19 ZNF677 1 99.0 Highly correlated
20 ZNF136 1 74.0 Weakly correlated
21 ZNF558 1 99.0 Highly correlated
22 ZNF483 1 99.0 Highly correlated
23 ZNF160 1 74.0 Weakly correlated
24 ZNF680 1 28.9 Weakly correlated
25 ZNF429 1 28.9 Weakly correlated
26 ZNF263 1 180.0 Weakly correlated
27 ZNF140 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats