ZRdb KZFP & Repeats
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LINE_L1MEG1_5END

  • Name
    L1MEG1_5END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000309
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggacttctgcttccgggtangatggagtagcttgcggcagaccaacgctcccgccgagaacaactagaaaagctagataaaatacaaaaatcatctgtttgaaggcatcggagagctgctgaagcaacgaggactngaggggccaagattccggagaggggagaaccncggagaggtgagctgacgntctgcagccgctttttccctgggggcatttgccgattctgggcacgggcaagaggctgagaatccgggctttgcccgggcagagggccgctgctgggggacagagaaaccagcagagcttttggcggtctcgcggggctggagngacaaaattggagacttgaggggcctcaaacacacggccggttttcccctcaagacatttgccgaattctgaagctgcgcggggcaggaggctaaaaagctaagcngaaagcctctgaaaagcagagcggaattttcngcagtctcgcggtgctgaggagacaaagacctaccaggctctcagttgaaagccctggagggctacgccctaggaacaggggcgaaccagaggtagactgagccttaccaaaactgcaacccagcctcgactcagctcagtccctgattggattaaggtgatcagcccctcactctatctgcctagcagaggaaagggtgaaccctctctggaggaagataacatccggagcctctacaattttttatacacaatgtccggcattcaatnaaaaattactaggcatgccaagagacaggaccatatgaccgaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 32 99.0 Highly correlated
2 ZIM3 16 87.0 Moderately correlated
3 ZNF766 9 43.0 Weakly correlated
4 ZNF317 9 99.0 Highly correlated
5 ZNF680 8 28.9 Weakly correlated
6 ZNF274 7 99.0 Highly correlated
7 ZNF567 7 99.0 Highly correlated
8 ZFP28 6 99.0 Highly correlated
9 ZNF679 5 28.9 Weakly correlated
10 ZNF394 5 99.0 Highly correlated
11 ZNF589 4 28.9 Weakly correlated
12 ZNF479 4 6.4 Weakly correlated
13 ZNF534 4 19.6 Weakly correlated
14 ZKSCAN1 4 160.0 Weakly correlated
15 ZNF723 4 15.2 Weakly correlated
16 ZFP30 3 99.0 Highly correlated
17 ZNF26 3 99.0 Highly correlated
18 ZNF197 3 99.0 Highly correlated
19 ZKSCAN8 3 160.0 Weakly correlated
20 ZNF133 2 99.0 Highly correlated
21 ZNF793 2 99.0 Highly correlated
22 ZNF584 2 99.0 Highly correlated
23 ZNF140 2 99.0 Highly correlated
24 ZNF182 2 99.0 Highly correlated
25 ZNF175 2 94.0 Moderately correlated
26 ZNF429 2 28.9 Weakly correlated
27 ZNF506 2 28.9 Weakly correlated
28 ZNF705B 2 28.9 Weakly correlated
29 ZNF490 2 43.0 Weakly correlated
30 ZFP69B 1 99.0 Highly correlated
31 ZNF674 1 99.0 Highly correlated
32 ZKSCAN2 1 180.0 Weakly correlated
33 ZNF705D 1 28.9 Weakly correlated
34 ZNF528 1 43.0 Weakly correlated
35 ZNF727 1 19.6 Weakly correlated
36 ZNF735 1 28.9 Weakly correlated
37 ZFP37 1 99.0 Highly correlated
38 ZNF91 1 6.0 Weakly correlated
39 ZNF135 1 94.0 Moderately correlated
40 ZNF263 1 180.0 Weakly correlated
41 ZNF485 1 94.0 Moderately correlated
42 ZNF483 1 99.0 Highly correlated
43 ZNF169 1 94.0 Moderately correlated
44 ZNF44 1 43.0 Weakly correlated
45 ZNF334 1 99.0 Highly correlated
46 ZNF18 1 160.0 Weakly correlated
47 ZNF28 1 28.9 Weakly correlated
48 ZNF287 1 99.0 Highly correlated
49 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF567 7 99.0 Highly correlated
2 ZIM3 6 87.0 Moderately correlated
3 ZNF382 4 99.0 Highly correlated
4 ZNF479 3 6.4 Weakly correlated
5 ZNF723 3 15.2 Weakly correlated
6 ZNF26 3 99.0 Highly correlated
7 ZNF534 3 19.6 Weakly correlated
8 ZFP28 2 99.0 Highly correlated
9 ZNF485 1 94.0 Moderately correlated
10 ZNF257 1 0.0 Weakly correlated
11 ZNF735 1 28.9 Weakly correlated
12 ZNF483 1 99.0 Highly correlated
13 ZNF317 1 99.0 Highly correlated
14 ZNF680 1 28.9 Weakly correlated
15 ZNF679 1 28.9 Weakly correlated
16 ZNF506 1 28.9 Weakly correlated
17 ZNF287 1 99.0 Highly correlated
18 ZNF133 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats