ZRdb KZFP & Repeats
...

LINE_L1MEF_5END

  • Name
    L1MEF_5END
  • Repbase
    L1MEf_5end
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000308
Description :

L1MEf_5end encodes a complete gag (ORF1) protein: ~634-1593.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
agagttccgnttccggcatggcggagtaagcccactacagncctatctctcccgcngatnacaactanaaactctggacaaaatacaaaaaacaactacctgagggctctggagagtgaacaaaagcaggcagattntggaggggagtcgaaacttggagaagngacnngcacggnggtgagtttcccagttttttttccttctttctcncggctttgccccgagggcggccccagtcacggagctgtgcagcagagcggcgcgggcagctaaaactccganagaaaccccatctttctggccngaggaaccgggaaaaggggcccctgggagccggagagtgngggggaaatcccggagaggagagagccggagaggggaanccccnaattctgtgtataaacccgcncaagtcccaggctgacccctgagccgcgcacgcgcgggacagacccaaagcagcacagcaaaggctttgagaactgaactganattngaaccgccgcccacagaaggcgagacagaacttgcagtctgaacccaaccgggttaattgcctgctaaaacaaaaaaaaatcaacattctccagaggantntaacagaacccagagtctcacaacataatattcanaatgtccaggatacaatccaaaattactcgacatacgaagaancaggaaaatgtgaccnattctcaagggaaaagacaatcaacagangccaaccccgagatgacccagatgttggaattancagacaaggactttaaagcagctattataantatgctcnangangtaaaggnaaacacgcttgaaatgaatgaaaagatagaaaatctcagcagagaaatagaaactataaaaaagaaccaaatggaaattctagaactgaaaaatacaatatctgaaatnaaaaattcactggatgggcttaatagcagantggagatgacagaggaaagagtcagtgaacttgaagatagatcaatagaaattatccaatctgaagaacagagagaaaaaaaattgaaaaaaaatgaacagagcctcagggacctgtgggacaatatcaaaaggtctaacatncgtgtaattggagtcccagaaggagaggagaaagagaatggggcagaaaaaatatttgaagaaataatggccgaaaatttcccaaatttggtgaaagacataaacttacagattcaagaagctcagcgaaccccaagcaggataaacncaaagaaaaccacgcctaggcacatcataatcaaactgctgaaaaccaaagataaagaaaaaatcttgaaagcagccagagaaaaacgacacattacatacaggggaacaacgatncgaatgacngcngacttctcatcagaaacnatggaggccagaagacagtggaacgacatctttaaagtgctgaaagaaaaaaactgtcaacccagaattctatatccagcgaaaatatccttcaaaaatgaaggcgaaataaagacattttcagataaangaaaactaagagaattcgtcgccagcagacctgcnctanaagaaatgctaaaggaagttcttcaggctgaagggaaatgataccaganggaaacttggatctncaggaangaangaagagcancagaaatggtaaatatntgggtaaatataaaagactatttttctcctcttaanttctttaaaatacatatgactgtttaaagcaaaaattataacattgtntngtggggtttataacgtatgtagangtaanacatatgacaacnatagcacaaaggatgggagggtaaatgggacctatacggttgtaaggtttctacattttacgtgaagtggtanaatattaactctaagtagactgtganaagttaagnatgtatattgtaatccctagagcaaccactaaaaaaataatacaaagagatatagctaaaaagccaataganaaattaaaatggaatactaaaaatattcaantaatccaaaagaaggcagaaaagaggaaacagaggaacaaaaaacagangggacaaacagaaaacaaataacaaaatggtagacctaaatccaaccatatcaataattacattaaatgtaaatggnctaaacacnccaattaaaaggcagagattgtcagantggattaaaaagcaagacccaactatatgctgtctacaagaaacncactttaaatataaagat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 923 99.0 Highly correlated
2 ZNF382 870 99.0 Highly correlated
3 ZNF558 286 99.0 Highly correlated
4 ZIM3 244 87.0 Moderately correlated
5 ZNF136 223 74.0 Weakly correlated
6 ZNF793 167 99.0 Highly correlated
7 ZNF133 154 99.0 Highly correlated
8 ZNF766 134 43.0 Weakly correlated
9 ZNF680 127 28.9 Weakly correlated
10 ZNF354A 107 99.0 Highly correlated
11 ZNF567 99 99.0 Highly correlated
12 ZNF26 98 99.0 Highly correlated
13 ZNF394 93 99.0 Highly correlated
14 ZNF160 73 74.0 Weakly correlated
15 ZNF705B 72 28.9 Weakly correlated
16 ZNF92 71 28.9 Weakly correlated
17 ZNF679 68 28.9 Weakly correlated
18 ZFP28 64 99.0 Highly correlated
19 ZNF263 62 180.0 Weakly correlated
20 ZNF490 62 43.0 Weakly correlated
21 ZFP37 57 99.0 Highly correlated
22 ZNF2 53 99.0 Highly correlated
23 ZNF610 53 28.9 Weakly correlated
24 ZNF723 53 15.2 Weakly correlated
25 ZNF479 49 6.4 Weakly correlated
26 ZNF182 48 99.0 Highly correlated
27 ZNF534 45 19.6 Weakly correlated
28 ZNF101 43 43.0 Weakly correlated
29 ZNF251 43 94.0 Moderately correlated
30 ZNF324 43 99.0 Highly correlated
31 ZNF705D 43 28.9 Weakly correlated
32 ZNF18 38 160.0 Weakly correlated
33 ZKSCAN1 35 160.0 Weakly correlated
34 ZNF248 35 99.0 Highly correlated
35 ZNF585A 35 99.0 Highly correlated
36 ZNF506 32 28.9 Weakly correlated
37 ZNF287 29 99.0 Highly correlated
38 ZNF554 27 99.0 Highly correlated
39 ZNF175 25 94.0 Moderately correlated
40 ZNF589 25 28.9 Weakly correlated
41 ZNF75D 25 94.0 Moderately correlated
42 ZNF197 24 99.0 Highly correlated
43 ZFP69B 23 99.0 Highly correlated
44 ZNF140 23 99.0 Highly correlated
45 ZNF274 21 99.0 Highly correlated
46 ZNF257 20 0.0 Weakly correlated
47 ZFP57 18 87.0 Moderately correlated
48 ZNF486 18 8.6 Weakly correlated
49 ZNF549 18 87.0 Moderately correlated
50 ZNF597 17 94.0 Moderately correlated
51 ZNF528 16 43.0 Weakly correlated
52 ZNF547 16 74.0 Weakly correlated
53 ZNF584 16 99.0 Highly correlated
54 ZNF8 16 99.0 Highly correlated
55 ZNF169 14 94.0 Moderately correlated
56 ZNF320 14 28.9 Weakly correlated
57 ZNF701 14 28.9 Weakly correlated
58 ZNF202 13 160.0 Weakly correlated
59 ZNF441 13 43.0 Weakly correlated
60 ZNF585B 13 99.0 Highly correlated
61 ZKSCAN8 12 160.0 Weakly correlated
62 ZNF264 12 99.0 Highly correlated
63 ZNF471 12 94.0 Moderately correlated
64 ZNF677 12 99.0 Highly correlated
65 ZFP90 11 99.0 Highly correlated
66 ZNF28 11 28.9 Weakly correlated
67 ZNF45 10 99.0 Highly correlated
68 ZNF485 10 94.0 Moderately correlated
69 ZNF823 10 43.0 Weakly correlated
70 ZNF230 9 28.9 Weakly correlated
71 ZNF695 9 28.9 Weakly correlated
72 ZNF879 9 99.0 Highly correlated
73 ZNF440 8 28.9 Weakly correlated
74 ZNF786 8 99.0 Highly correlated
75 ZNF284 7 43.0 Weakly correlated
76 ZNF429 7 28.9 Weakly correlated
77 ZNF519 7 19.6 Weakly correlated
78 ZNF563 7 28.9 Weakly correlated
79 ZNF792 7 94.0 Moderately correlated
80 ZFP30 6 99.0 Highly correlated
81 ZNF17 6 69.0 Weakly correlated
82 ZNF425 6 94.0 Moderately correlated
83 ZNF791 6 87.0 Moderately correlated
84 ZNF84 6 99.0 Highly correlated
85 ZKSCAN5 5 160.0 Weakly correlated
86 ZNF10 5 99.0 Highly correlated
87 ZNF211 5 94.0 Moderately correlated
88 ZNF350 5 99.0 Highly correlated
89 ZNF41 5 99.0 Highly correlated
90 ZNF674 5 99.0 Highly correlated
91 ZNF716 5 19.6 Weakly correlated
92 ZNF730 5 19.6 Weakly correlated
93 ZNF808 5 19.6 Weakly correlated
94 ZNF816 5 28.9 Weakly correlated
95 ZNF878 5 43.0 Weakly correlated
96 ZFP69 4 99.0 Highly correlated
97 ZNF114 4 28.9 Weakly correlated
98 ZNF189 4 99.0 Highly correlated
99 ZNF33A 4 99.0 Highly correlated
100 ZNF454 4 99.0 Highly correlated
101 ZNF483 4 99.0 Highly correlated
102 ZNF735 4 28.9 Weakly correlated
103 ZFP14 3 99.0 Highly correlated
104 ZNF100 3 28.9 Weakly correlated
105 ZNF141 3 43.0 Weakly correlated
106 ZNF334 3 99.0 Highly correlated
107 ZNF347 3 43.0 Weakly correlated
108 ZNF510 3 99.0 Highly correlated
109 ZNF560 3 43.0 Weakly correlated
110 ZNF573 3 94.0 Moderately correlated
111 ZNF641 3 99.0 Highly correlated
112 ZNF669 3 43.0 Weakly correlated
113 ZNF700 3 28.9 Weakly correlated
114 ZNF707 3 74.0 Weakly correlated
115 ZNF75A 3 94.0 Moderately correlated
116 ZNF778 3 74.0 Weakly correlated
117 ZNF81 3 99.0 Highly correlated
118 ZNF85 3 28.9 Weakly correlated
119 ZNF93 3 8.6 Weakly correlated
120 ZNF135 2 94.0 Moderately correlated
121 ZNF222 2 43.0 Weakly correlated
122 ZNF273 2 28.9 Weakly correlated
123 ZNF282 2 319.0 Weakly correlated
124 ZNF283 2 99.0 Highly correlated
125 ZNF331 2 94.0 Moderately correlated
126 ZNF337 2 43.0 Weakly correlated
127 ZNF343 2 74.0 Weakly correlated
128 ZNF43 2 43.0 Weakly correlated
129 ZNF57 2 28.9 Weakly correlated
130 ZNF596 2 94.0 Moderately correlated
131 ZNF780A 2 43.0 Weakly correlated
132 ZNF782 2 99.0 Highly correlated
133 ZFP1 1 99.0 Highly correlated
134 ZKSCAN2 1 180.0 Weakly correlated
135 ZNF124 1 43.0 Weakly correlated
136 ZNF154 1 94.0 Moderately correlated
137 ZNF224 1 69.0 Weakly correlated
138 ZNF225 1 74.0 Weakly correlated
139 ZNF253 1 19.6 Weakly correlated
140 ZNF333 1 99.0 Highly correlated
141 ZNF34 1 99.0 Highly correlated
142 ZNF3 1 160.0 Weakly correlated
143 ZNF418 1 43.0 Weakly correlated
144 ZNF468 1 28.9 Weakly correlated
145 ZNF555 1 94.0 Moderately correlated
146 ZNF559 1 74.0 Weakly correlated
147 ZNF568 1 99.0 Highly correlated
148 ZNF569 1 99.0 Highly correlated
149 ZNF586 1 43.0 Weakly correlated
150 ZNF605 1 99.0 Highly correlated
151 ZNF614 1 99.0 Highly correlated
152 ZNF649 1 28.9 Weakly correlated
153 ZNF665 1 28.9 Weakly correlated
154 ZNF671 1 94.0 Moderately correlated
155 ZNF675 1 8.6 Weakly correlated
156 ZNF681 1 28.9 Weakly correlated
157 ZNF705E 1 0.0 Weakly correlated
158 ZNF718 1 19.6 Weakly correlated
159 ZNF727 1 19.6 Weakly correlated
160 ZNF789 1 99.0 Highly correlated
161 ZNF846 1 74.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 192 99.0 Highly correlated
2 ZNF136 181 74.0 Weakly correlated
3 ZIM3 141 87.0 Moderately correlated
4 ZNF133 138 99.0 Highly correlated
5 ZNF382 122 99.0 Highly correlated
6 ZNF558 116 99.0 Highly correlated
7 ZNF793 87 99.0 Highly correlated
8 ZNF26 81 99.0 Highly correlated
9 ZNF567 79 99.0 Highly correlated
10 ZNF160 70 74.0 Weakly correlated
11 ZNF354A 68 99.0 Highly correlated
12 ZNF490 51 43.0 Weakly correlated
13 ZNF680 45 28.9 Weakly correlated
14 ZFP28 29 99.0 Highly correlated
15 ZNF766 29 43.0 Weakly correlated
16 ZNF534 28 19.6 Weakly correlated
17 ZNF723 28 15.2 Weakly correlated
18 ZNF248 26 99.0 Highly correlated
19 ZNF479 25 6.4 Weakly correlated
20 ZNF101 23 43.0 Weakly correlated
21 ZNF705B 20 28.9 Weakly correlated
22 ZNF585A 19 99.0 Highly correlated
23 ZNF287 18 99.0 Highly correlated
24 ZFP90 10 99.0 Highly correlated
25 ZNF506 10 28.9 Weakly correlated
26 ZNF471 10 94.0 Moderately correlated
27 ZNF677 10 99.0 Highly correlated
28 ZNF705D 10 28.9 Weakly correlated
29 ZNF140 9 99.0 Highly correlated
30 ZNF597 9 94.0 Moderately correlated
31 ZNF263 7 180.0 Weakly correlated
32 ZNF324 7 99.0 Highly correlated
33 ZNF695 7 28.9 Weakly correlated
34 ZNF75D 7 94.0 Moderately correlated
35 ZNF264 7 99.0 Highly correlated
36 ZNF92 7 28.9 Weakly correlated
37 ZNF610 7 28.9 Weakly correlated
38 ZNF485 6 94.0 Moderately correlated
39 ZNF197 6 99.0 Highly correlated
40 ZNF394 6 99.0 Highly correlated
41 ZNF679 6 28.9 Weakly correlated
42 ZFP57 5 87.0 Moderately correlated
43 ZNF2 5 99.0 Highly correlated
44 ZNF202 5 160.0 Weakly correlated
45 ZNF440 5 28.9 Weakly correlated
46 ZNF879 5 99.0 Highly correlated
47 ZNF10 4 99.0 Highly correlated
48 ZNF549 4 87.0 Moderately correlated
49 ZNF701 4 28.9 Weakly correlated
50 ZNF251 4 94.0 Moderately correlated
51 ZNF18 4 160.0 Weakly correlated
52 ZNF45 4 99.0 Highly correlated
53 ZNF716 4 19.6 Weakly correlated
54 ZFP14 3 99.0 Highly correlated
55 ZFP69 3 99.0 Highly correlated
56 ZKSCAN5 3 160.0 Weakly correlated
57 ZNF169 3 94.0 Moderately correlated
58 ZNF429 3 28.9 Weakly correlated
59 ZNF528 3 43.0 Weakly correlated
60 ZNF350 3 99.0 Highly correlated
61 ZNF589 3 28.9 Weakly correlated
62 ZNF257 3 0.0 Weakly correlated
63 ZNF84 3 99.0 Highly correlated
64 ZFP69B 2 99.0 Highly correlated
65 ZNF347 2 43.0 Weakly correlated
66 ZNF585B 2 99.0 Highly correlated
67 ZNF182 2 99.0 Highly correlated
68 ZNF780A 2 43.0 Weakly correlated
69 ZNF274 2 99.0 Highly correlated
70 ZNF320 2 28.9 Weakly correlated
71 ZNF823 2 43.0 Weakly correlated
72 ZNF189 2 99.0 Highly correlated
73 ZNF735 2 28.9 Weakly correlated
74 ZNF81 2 99.0 Highly correlated
75 ZNF707 2 74.0 Weakly correlated
76 ZNF792 2 94.0 Moderately correlated
77 ZNF596 2 94.0 Moderately correlated
78 ZFP1 1 99.0 Highly correlated
79 ZFP37 1 99.0 Highly correlated
80 ZKSCAN1 1 160.0 Weakly correlated
81 ZNF141 1 43.0 Weakly correlated
82 ZNF154 1 94.0 Moderately correlated
83 ZNF211 1 94.0 Moderately correlated
84 ZNF230 1 28.9 Weakly correlated
85 ZNF584 1 99.0 Highly correlated
86 ZNF175 1 94.0 Moderately correlated
87 ZNF337 1 43.0 Weakly correlated
88 ZNF486 1 8.6 Weakly correlated
89 ZNF641 1 99.0 Highly correlated
90 ZNF671 1 94.0 Moderately correlated
91 ZNF253 1 19.6 Weakly correlated
92 ZNF33A 1 99.0 Highly correlated
93 ZNF34 1 99.0 Highly correlated
94 ZNF674 1 99.0 Highly correlated
95 ZNF483 1 99.0 Highly correlated
96 ZNF225 1 74.0 Weakly correlated
97 ZNF343 1 74.0 Weakly correlated
98 ZNF85 1 28.9 Weakly correlated
99 ZNF8 1 99.0 Highly correlated
100 ZNF547 1 74.0 Weakly correlated
101 ZNF28 1 28.9 Weakly correlated
102 ZNF786 1 99.0 Highly correlated
103 ZNF282 1 319.0 Weakly correlated
104 ZNF468 1 28.9 Weakly correlated
105 ZNF700 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF136 74.0 Weakly correlated
3 ZNF197 99.0 Highly correlated
4 ZNF248 99.0 Highly correlated
5 ZNF26 99.0 Highly correlated
6 ZNF317 99.0 Highly correlated
7 ZNF471 94.0 Moderately correlated
8 ZNF490 43.0 Weakly correlated
9 ZNF567 99.0 Highly correlated
10 ZNF597 94.0 Moderately correlated
11 ZNF610 28.9 Weakly correlated
12 ZNF677 99.0 Highly correlated
13 ZNF680 28.9 Weakly correlated
14 ZNF695 28.9 Weakly correlated
15 ZNF75D 94.0 Moderately correlated
16 ZNF793 99.0 Highly correlated