ZRdb KZFP & Repeats
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LINE_L1MED_5END

  • Name
    L1MED_5END
  • Repbase
    L1MED_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000777
Description :

5' end of LINE elements with L1ME subfamily 3' ends ORF1 starts at pos.682. ORF 684-1640 encodes a gag protein similar to those of other L1MEelements. ORF2 starts at position 2075 (standard first 150 nucleotidesincluded).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cggacttccgtttccggcaatatggcggactagataacctgaaaaccctcccgctacaaaacacctagaaatgctggataaaatataacaaacatccttttaaatgcatagctgagctcgcaagaaagtaagggaaatccccaggggccaaaaacgaagagggaactgaaaaccagagcggtaagcacgagctgaagctgcggctgccctgagggcatttgccggtctcggtaaccnaggggcttgggttttaacggccacgcggggacaggagacgaggccttgggcccgcgcaaggcggggagttggaactgagacccccgcataaagccgggaccctcgaagggctacaccctcagtgaaagggtggactagaaaaaaatccgcccaccggcacagggagacgacaaggaaacttgtctgtctcggcctgggctctgggtggagaaaaaaagtctcccctgagaattcgtaaccacaggcctgccctcacgcgggtttggggttcgaatttacactacctgcgtggtccgggaaaccccaagccgagaaattaacttaaagtggtcccgggctggtagtacccctggggcgcctggcagaagcaaacgcaaancctctctggaggaacgcaccctcaacccaggccncanaggattcccacagataaagccccgncgaanatgagctcacaatcnaaaattacaaaacacacgaggaaacaanccaccatgagcgagagtcagcagaaacaacaaacagcagaattagacccccaagaacttcagatantggaattatcagatanagantataaaataagtatgtttaaaatgnttaaaganataaaagaaggaattaaaaacatgagnaaggaacaaganactatnaaaaangaccaggcagatttgaaaaagaaccaaatagaacttctagaaatgaaaaatatagtcattgaaattaaaaactcaatggatgggttaaacagcagattagacacagctgaagagagaattagtgaactggaagatagatctgaagaaattacccagaatgcagcacagagagataaagagatggaaaatatgaaagagaggttaagagacatggaggatagaatgagaaggtctaacatacgtctaatnggagttccagaaggagagaatagagagaatgggggagaggcaatattcgaagagataatggctgagaattttccagaattgatgaaagacatnaatcctcagattcaggaagcncaacgaatcccaagcaggataaataaaaanaaatccacacctagacacatcgtagtgaaactgcagaacaccaaagacaaagagaagatcttaaaagcagccagagagaaaagacagattacctacaaaggaacgacaattagactgacagcngacttctcaacagcaacaatggaagccagaagacagtggaataatatcttcaaagtgctgagagaaaataactgtcaacctagaattctatacccagcnaaactatcnttcaagaatgagggcgaaataaagacattttcagacaaacaaaaactgagagagtttaccaccaacagaccctcactaaaggaactnctaaaggatgtacttcaggaagaaggaaantgancccagaaggaaggnctgagatgcaagaaggaatggtgagcaaagaaantggtaaacatgtgggtaaatctaaacaaacattgactgtataaaacaataataataatgnctaatttgnggggtataaaaacaaggtagaactaaaatactggacaacaataacatgtaagtcgggaggggggtgatcggagttaaagcgttctaaggtccttgtattgttcgggaggagggtaaagatattgattaactttagactttgttaagttaagtatgcatgttaaaattttaagggtaaccactaaaagaatagaaatagaatgtataacttccaaaccagtagaggggaaaanaaaaaanaaaaannnaatcaatccaaaagaaggcaagaaaggagagaaaaagaaacatagaacaaatagaaagcacaaaataagatggtagaaataaatccaaatatatcagtaatcacaataaatgtaaatggactaaactcnccagttaaaagacagagattgtcagattggattaaaaaaacaaatccagctatatgctgtttacaagagacacacctaaaacataaggac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 735 99.0 Highly correlated
2 ZNF382 583 99.0 Highly correlated
3 ZNF41 372 99.0 Highly correlated
4 ZNF558 345 99.0 Highly correlated
5 ZNF33A 309 99.0 Highly correlated
6 ZIM3 303 87.0 Moderately correlated
7 ZNF680 215 28.9 Weakly correlated
8 ZFP30 180 99.0 Highly correlated
9 ZNF394 180 99.0 Highly correlated
10 ZNF766 178 43.0 Weakly correlated
11 ZNF793 170 99.0 Highly correlated
12 ZFP82 164 99.0 Highly correlated
13 ZNF133 141 99.0 Highly correlated
14 ZFP37 111 99.0 Highly correlated
15 ZNF264 111 99.0 Highly correlated
16 ZNF263 110 180.0 Weakly correlated
17 ZNF2 106 99.0 Highly correlated
18 ZFP28 102 99.0 Highly correlated
19 ZNF705B 102 28.9 Weakly correlated
20 ZNF92 100 28.9 Weakly correlated
21 ZNF197 92 99.0 Highly correlated
22 ZNF679 86 28.9 Weakly correlated
23 ZNF136 85 74.0 Weakly correlated
24 ZNF175 75 94.0 Moderately correlated
25 ZNF18 73 160.0 Weakly correlated
26 ZNF723 72 15.2 Weakly correlated
27 ZNF534 70 19.6 Weakly correlated
28 ZNF610 68 28.9 Weakly correlated
29 ZNF705D 67 28.9 Weakly correlated
30 ZKSCAN1 63 160.0 Weakly correlated
31 ZNF182 61 99.0 Highly correlated
32 ZNF324 57 99.0 Highly correlated
33 ZFP69B 56 99.0 Highly correlated
34 ZNF101 54 43.0 Weakly correlated
35 ZNF490 52 43.0 Weakly correlated
36 ZNF140 48 99.0 Highly correlated
37 ZNF354A 47 99.0 Highly correlated
38 ZNF589 47 28.9 Weakly correlated
39 ZNF287 46 99.0 Highly correlated
40 ZNF479 42 6.4 Weakly correlated
41 ZNF597 41 94.0 Moderately correlated
42 ZNF585B 40 99.0 Highly correlated
43 ZNF75D 37 94.0 Moderately correlated
44 ZNF251 36 94.0 Moderately correlated
45 ZNF257 36 0.0 Weakly correlated
46 ZNF8 36 99.0 Highly correlated
47 ZNF26 35 99.0 Highly correlated
48 ZNF506 35 28.9 Weakly correlated
49 ZKSCAN8 33 160.0 Weakly correlated
50 ZNF160 31 74.0 Weakly correlated
51 ZNF202 30 160.0 Weakly correlated
52 ZNF567 30 99.0 Highly correlated
53 ZNF486 28 8.6 Weakly correlated
54 ZNF584 28 99.0 Highly correlated
55 ZNF735 26 28.9 Weakly correlated
56 ZNF554 25 99.0 Highly correlated
57 ZNF471 24 94.0 Moderately correlated
58 ZNF585A 24 99.0 Highly correlated
59 ZNF701 24 28.9 Weakly correlated
60 ZFP57 22 87.0 Moderately correlated
61 ZNF485 22 94.0 Moderately correlated
62 ZNF441 21 43.0 Weakly correlated
63 ZNF320 20 28.9 Weakly correlated
64 ZNF528 20 43.0 Weakly correlated
65 ZNF549 19 87.0 Moderately correlated
66 ZNF547 18 74.0 Weakly correlated
67 ZNF792 18 94.0 Moderately correlated
68 ZNF248 17 99.0 Highly correlated
69 ZNF641 17 99.0 Highly correlated
70 ZNF707 17 74.0 Weakly correlated
71 ZNF823 16 43.0 Weakly correlated
72 ZNF274 15 99.0 Highly correlated
73 ZNF44 15 43.0 Weakly correlated
74 ZFP69 12 99.0 Highly correlated
75 ZNF169 12 94.0 Moderately correlated
76 ZNF10 11 99.0 Highly correlated
77 ZNF28 10 28.9 Weakly correlated
78 ZNF331 10 94.0 Moderately correlated
79 ZNF568 10 99.0 Highly correlated
80 ZNF583 10 99.0 Highly correlated
81 ZNF84 9 99.0 Highly correlated
82 ZNF273 8 28.9 Weakly correlated
83 ZNF284 8 43.0 Weakly correlated
84 ZNF425 8 94.0 Moderately correlated
85 ZNF429 8 28.9 Weakly correlated
86 ZNF519 8 19.6 Weakly correlated
87 ZNF677 8 99.0 Highly correlated
88 ZNF879 8 99.0 Highly correlated
89 ZNF141 7 43.0 Weakly correlated
90 ZNF17 6 69.0 Weakly correlated
91 ZNF440 6 28.9 Weakly correlated
92 ZNF695 6 28.9 Weakly correlated
93 ZNF778 6 74.0 Weakly correlated
94 ZFP90 5 99.0 Highly correlated
95 ZNF253 5 19.6 Weakly correlated
96 ZNF334 5 99.0 Highly correlated
97 ZNF350 5 99.0 Highly correlated
98 ZNF468 5 28.9 Weakly correlated
99 ZNF563 5 28.9 Weakly correlated
100 ZNF573 5 94.0 Moderately correlated
101 ZNF682 5 28.9 Weakly correlated
102 ZKSCAN5 4 160.0 Weakly correlated
103 ZNF12 4 99.0 Highly correlated
104 ZNF222 4 43.0 Weakly correlated
105 ZNF354C 4 99.0 Highly correlated
106 ZNF454 4 99.0 Highly correlated
107 ZNF605 4 99.0 Highly correlated
108 ZNF658 4 99.0 Highly correlated
109 ZNF669 4 43.0 Weakly correlated
110 ZNF674 4 99.0 Highly correlated
111 ZNF808 4 19.6 Weakly correlated
112 ZNF91 4 6.0 Weakly correlated
113 ZNF100 3 28.9 Weakly correlated
114 ZNF418 3 43.0 Weakly correlated
115 ZNF433 3 43.0 Weakly correlated
116 ZNF484 3 99.0 Highly correlated
117 ZNF560 3 43.0 Weakly correlated
118 ZNF730 3 19.6 Weakly correlated
119 ZNF786 3 99.0 Highly correlated
120 ZNF816 3 28.9 Weakly correlated
121 ZNF230 2 28.9 Weakly correlated
122 ZNF347 2 43.0 Weakly correlated
123 ZNF43 2 43.0 Weakly correlated
124 ZNF445 2 99.0 Highly correlated
125 ZNF510 2 99.0 Highly correlated
126 ZNF530 2 28.9 Weakly correlated
127 ZNF569 2 99.0 Highly correlated
128 ZNF586 2 43.0 Weakly correlated
129 ZNF596 2 94.0 Moderately correlated
130 ZNF607 2 43.0 Weakly correlated
131 ZNF614 2 99.0 Highly correlated
132 ZNF616 2 43.0 Weakly correlated
133 ZNF627 2 74.0 Weakly correlated
134 ZNF736 2 43.0 Weakly correlated
135 ZNF75A 2 94.0 Moderately correlated
136 ZNF780A 2 43.0 Weakly correlated
137 ZNF813 2 28.9 Weakly correlated
138 ZNF85 2 28.9 Weakly correlated
139 ZNF878 2 43.0 Weakly correlated
140 ZNF93 2 8.6 Weakly correlated
141 ZFP1 1 99.0 Highly correlated
142 ZNF124 1 43.0 Weakly correlated
143 ZNF135 1 94.0 Moderately correlated
144 ZNF157 1 99.0 Highly correlated
145 ZNF189 1 99.0 Highly correlated
146 ZNF19 1 99.0 Highly correlated
147 ZNF224 1 69.0 Weakly correlated
148 ZNF235 1 99.0 Highly correlated
149 ZNF30 1 94.0 Moderately correlated
150 ZNF333 1 99.0 Highly correlated
151 ZNF337 1 43.0 Weakly correlated
152 ZNF34 1 99.0 Highly correlated
153 ZNF354B 1 99.0 Highly correlated
154 ZNF461 1 99.0 Highly correlated
155 ZNF480 1 43.0 Weakly correlated
156 ZNF483 1 99.0 Highly correlated
157 ZNF487 1 28.9 Weakly correlated
158 ZNF529 1 99.0 Highly correlated
159 ZNF557 1 15.2 Weakly correlated
160 ZNF561 1 43.0 Weakly correlated
161 ZNF570 1 99.0 Highly correlated
162 ZNF578 1 15.2 Weakly correlated
163 ZNF595 1 43.0 Weakly correlated
164 ZNF611 1 19.6 Weakly correlated
165 ZNF615 1 99.0 Highly correlated
166 ZNF665 1 28.9 Weakly correlated
167 ZNF675 1 8.6 Weakly correlated
168 ZNF681 1 28.9 Weakly correlated
169 ZNF684 1 99.0 Highly correlated
170 ZNF689 1 99.0 Highly correlated
171 ZNF705E 1 0.0 Weakly correlated
172 ZNF716 1 19.6 Weakly correlated
173 ZNF749 1 28.9 Weakly correlated
174 ZNF777 1 319.0 Weakly correlated
175 ZNF799 1 43.0 Weakly correlated
176 ZNF81 1 99.0 Highly correlated
177 ZNF845 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 210 99.0 Highly correlated
2 ZNF41 169 99.0 Highly correlated
3 ZFP82 159 99.0 Highly correlated
4 ZIM3 157 87.0 Moderately correlated
5 ZNF558 144 99.0 Highly correlated
6 ZNF793 78 99.0 Highly correlated
7 ZNF33A 73 99.0 Highly correlated
8 ZNF133 69 99.0 Highly correlated
9 ZNF136 62 74.0 Weakly correlated
10 ZNF680 59 28.9 Weakly correlated
11 ZNF264 52 99.0 Highly correlated
12 ZNF382 50 99.0 Highly correlated
13 ZFP28 44 99.0 Highly correlated
14 ZNF534 38 19.6 Weakly correlated
15 ZNF723 33 15.2 Weakly correlated
16 ZNF101 31 43.0 Weakly correlated
17 ZNF287 31 99.0 Highly correlated
18 ZNF354A 28 99.0 Highly correlated
19 ZNF26 27 99.0 Highly correlated
20 ZNF490 25 43.0 Weakly correlated
21 ZNF567 24 99.0 Highly correlated
22 ZNF160 23 74.0 Weakly correlated
23 ZNF766 23 43.0 Weakly correlated
24 ZNF479 23 6.4 Weakly correlated
25 ZNF597 19 94.0 Moderately correlated
26 ZNF263 18 180.0 Weakly correlated
27 ZNF705B 18 28.9 Weakly correlated
28 ZNF140 16 99.0 Highly correlated
29 ZNF75D 16 94.0 Moderately correlated
30 ZNF705D 16 28.9 Weakly correlated
31 ZNF585A 16 99.0 Highly correlated
32 ZNF735 14 28.9 Weakly correlated
33 ZNF485 14 94.0 Moderately correlated
34 ZNF248 13 99.0 Highly correlated
35 ZNF197 11 99.0 Highly correlated
36 ZFP69 10 99.0 Highly correlated
37 ZNF44 10 43.0 Weakly correlated
38 ZNF679 10 28.9 Weakly correlated
39 ZNF641 9 99.0 Highly correlated
40 ZNF823 9 43.0 Weakly correlated
41 ZNF701 9 28.9 Weakly correlated
42 ZNF175 9 94.0 Moderately correlated
43 ZNF257 9 0.0 Weakly correlated
44 ZNF506 9 28.9 Weakly correlated
45 ZNF585B 8 99.0 Highly correlated
46 ZNF471 8 94.0 Moderately correlated
47 ZNF324 8 99.0 Highly correlated
48 ZNF10 7 99.0 Highly correlated
49 ZNF18 7 160.0 Weakly correlated
50 ZNF610 7 28.9 Weakly correlated
51 ZFP37 6 99.0 Highly correlated
52 ZNF589 6 28.9 Weakly correlated
53 ZNF84 6 99.0 Highly correlated
54 ZNF92 6 28.9 Weakly correlated
55 ZNF879 6 99.0 Highly correlated
56 ZNF394 5 99.0 Highly correlated
57 ZNF429 5 28.9 Weakly correlated
58 ZNF792 5 94.0 Moderately correlated
59 ZNF677 5 99.0 Highly correlated
60 ZFP90 4 99.0 Highly correlated
61 ZNF528 4 43.0 Weakly correlated
62 ZNF468 4 28.9 Weakly correlated
63 ZNF251 4 94.0 Moderately correlated
64 ZFP57 3 87.0 Moderately correlated
65 ZNF141 3 43.0 Weakly correlated
66 ZNF169 3 94.0 Moderately correlated
67 ZNF584 3 99.0 Highly correlated
68 ZNF2 3 99.0 Highly correlated
69 ZNF202 3 160.0 Weakly correlated
70 ZNF273 3 28.9 Weakly correlated
71 ZNF320 3 28.9 Weakly correlated
72 ZNF549 3 87.0 Moderately correlated
73 ZKSCAN1 2 160.0 Weakly correlated
74 ZKSCAN5 2 160.0 Weakly correlated
75 ZNF707 2 74.0 Weakly correlated
76 ZFP30 2 99.0 Highly correlated
77 ZNF573 2 94.0 Moderately correlated
78 ZNF583 2 99.0 Highly correlated
79 ZNF695 2 28.9 Weakly correlated
80 ZNF440 2 28.9 Weakly correlated
81 ZKSCAN8 2 160.0 Weakly correlated
82 ZNF331 2 94.0 Moderately correlated
83 ZNF596 2 94.0 Moderately correlated
84 ZNF350 2 99.0 Highly correlated
85 ZNF222 2 43.0 Weakly correlated
86 ZNF274 2 99.0 Highly correlated
87 ZFP69B 1 99.0 Highly correlated
88 ZNF433 1 43.0 Weakly correlated
89 ZNF749 1 28.9 Weakly correlated
90 ZNF674 1 99.0 Highly correlated
91 ZNF808 1 19.6 Weakly correlated
92 ZNF81 1 99.0 Highly correlated
93 ZNF8 1 99.0 Highly correlated
94 ZNF28 1 28.9 Weakly correlated
95 ZNF484 1 99.0 Highly correlated
96 ZNF554 1 99.0 Highly correlated
97 ZNF605 1 99.0 Highly correlated
98 ZNF627 1 74.0 Weakly correlated
99 ZNF684 1 99.0 Highly correlated
100 ZNF878 1 43.0 Weakly correlated
101 ZNF354B 1 99.0 Highly correlated
102 ZNF354C 1 99.0 Highly correlated
103 ZNF43 1 43.0 Weakly correlated
104 ZNF17 1 69.0 Weakly correlated
105 ZNF182 1 99.0 Highly correlated
106 ZNF347 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Highly correlated
2 ZFP37 99.0 Highly correlated
3 ZNF133 99.0 Highly correlated
4 ZNF136 74.0 Weakly correlated
5 ZNF175 94.0 Moderately correlated
6 ZNF18 160.0 Weakly correlated
7 ZNF248 99.0 Highly correlated
8 ZNF257 0.0 Weakly correlated
9 ZNF317 99.0 Highly correlated
10 ZNF41 99.0 Highly correlated
11 ZNF471 94.0 Moderately correlated
12 ZNF490 43.0 Weakly correlated
13 ZNF567 99.0 Highly correlated
14 ZNF597 94.0 Moderately correlated
15 ZNF680 28.9 Weakly correlated
16 ZNF701 28.9 Weakly correlated
17 ZNF75D 94.0 Moderately correlated
18 ZNF793 99.0 Highly correlated
19 ZNF84 99.0 Highly correlated
20 ZNF92 28.9 Weakly correlated