ZRdb KZFP & Repeats
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LINE_L1MEC_5END

  • Name
    L1MEC_5END
  • Repbase
    L1MEC_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000776
Description :

5' end of LINE elements with L1ME1-2 subfamily 3' ends, comprising the5' UTR, ORF1 (pos. 793-1771 or more) and part of ORF2.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aatgtnttaaaaaattcacttaaaatataataggagacttccgcttccggccaagatggagtaacagggaccggatttaccctcccgcctgaaacaactaaaaaacggacaaaatatatgaaacaacggttttcaagacactggacatcaggcaacgaaggacagtgatccctgagagacgggaaacaaacgaggtgagccctacgattgccccagcttactgcctngagagagtttccaggccgcggcgcagggagggggaacccaggcagagcccggcggnctccctgagttgaggagacggagctgagagtccggggaggccaaggntagctagagttcgcaggacagagtaccggagaggagagagctgcacagagagagaactccggagatnctgcagagggtccccctcgagtnttcagctgagtactgatcagcgcatgcatgtgaggaaactacccgaggccggggaaagaaccacccgaaaggannnnnaggattagagggaacagtncccggngctcacacagggccgggaatagtncctgttcccaccagccagantggaaaacctcataattcacggggcattgggtagagtactcagaagggtcttgcctcagtagtggggaanaattagccctagactaaacgctgctctggtcccgcctaacaaancttaaaagcaagacccgaaaggatcaaactgtttccaagtaacttaactgcgtcccagaacaaagctcaagaatatttataggaatacaaaaatatccagcacccaacaaggtaaaattcacaatgtctggcatccaatnaaaaattaccaggcatgcaaagaagcaggaaaatatnacgacccataatgaggagaaaaatcaatcaatngaaacngacccagaantgacacaganntgttagaattagaattagcagacaagganacattaaaacagttattataactgtattccatatgttcaaaaagttaagtagagacatggaagatataaaaaagacccaaatcgaacttctagaganntgaaaactacaatgtctgagatgaaaaatacactggatgggattaacggcagattaganancattgcagaagaaaagattagtgaacttgaagacatagcaatagaaactatccaaaatgaaacacagagagaaaaaaaaatttaaaaaattaaaaagaanagagcatcagtgagctgtgggacaacttcaagcggcctaatatacgtgtaattggagtccccgaaggagaggagaaaagagaaagagagaaaaaatatttgaagaaataatggccgaaaattttccaaatttcgatgaaaactataaacccacagatccaagaagctcaacgaaccccaagcacaagaaacatgaagaaaactacaccaaggcacatcataatcaaattgctnaaaaccagtgataaagagaaaaatcttaaaagcagccagagaaaaaaagacacattacgtacagaggaacaaagataagaatgacagcagatttctcgtcggaaacaatgcaagcnagaagacagtggagcaacatctttaaagtactgaaagaaaaaaaanncgnnnnnnnnncgncgnnnnncgnannnncgcgnccgnnaaaaaaactgtcaacctagaattctatacccagcgaaaatatctttcaaaaatgaaggcgaaataaagactttttcagacatacaaaagctgaaagaattcatcaccagcagacctgcannactacaagaaatgttaaaggaagtccttcaggcagaaggaaaatgataccagatggaaatntggatctacacaaaggaatgaagagcaccggaaatggtaantacgtgggtaaatatataaaattttttttttttattatttaaaatctctttaaaagataattgactgtttaaagcaaaaataataacaatgtattgtggggtttataacatatgtaaanaaaatgtatgacaacaatagcacaaaggntaggaggggagaaatggaagtatactgttgtaaggttcttatactatacgtgaagtggtataatatcacttgaaggtagactgtgataagttaaagatgtatactataaaccctaaagcaaccactaaaataacaaaacaaagagttatagctaataagccaacaaaggagataaaatggaatcataaaaaatactcaattaatccaaaagaaggcagaaaaagaaaaaaggaaaaaagaacagatgggacaaatagaaaacaaatagcaagatggtagatttaaacccaaccatatcaataatcacattaaatgtaaatggtctaaacaccccaattaaaaggcagagattgtcagattggataaaaaagcaagacccaactatatgctgcctacaagaaacncactttaaatataaagacacaaataggttaaaagtaaaaggatggaaaaagatataccatgcaaaagaatacnaccaaaagncaaaaaaggtcattttataatgataaagg
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1363 99.0 Highly correlated
2 ZNF317 1261 99.0 Highly correlated
3 ZNF793 422 99.0 Highly correlated
4 ZIM3 352 87.0 Moderately correlated
5 ZNF26 295 99.0 Highly correlated
6 ZNF680 243 28.9 Weakly correlated
7 ZNF766 241 43.0 Weakly correlated
8 ZNF136 234 74.0 Weakly correlated
9 ZNF133 218 99.0 Highly correlated
10 ZNF558 196 99.0 Highly correlated
11 ZNF354A 186 99.0 Highly correlated
12 ZNF394 178 99.0 Highly correlated
13 ZNF567 142 99.0 Highly correlated
14 ZNF263 137 180.0 Weakly correlated
15 ZNF160 132 74.0 Weakly correlated
16 ZNF490 127 43.0 Weakly correlated
17 ZNF679 116 28.9 Weakly correlated
18 ZFP28 114 99.0 Highly correlated
19 ZNF18 90 160.0 Weakly correlated
20 ZNF705B 89 28.9 Weakly correlated
21 ZNF2 87 99.0 Highly correlated
22 ZNF92 86 28.9 Weakly correlated
23 ZNF610 85 28.9 Weakly correlated
24 ZFP37 83 99.0 Highly correlated
25 ZNF479 79 6.4 Weakly correlated
26 ZNF101 71 43.0 Weakly correlated
27 ZNF723 70 15.2 Weakly correlated
28 ZNF182 69 99.0 Highly correlated
29 ZNF534 65 19.6 Weakly correlated
30 ZNF705D 65 28.9 Weakly correlated
31 ZNF324 64 99.0 Highly correlated
32 ZNF257 62 0.0 Weakly correlated
33 ZFP30 57 99.0 Highly correlated
34 ZNF287 56 99.0 Highly correlated
35 ZNF554 55 99.0 Highly correlated
36 ZNF248 52 99.0 Highly correlated
37 ZKSCAN1 50 160.0 Weakly correlated
38 ZNF175 50 94.0 Moderately correlated
39 ZFP69B 47 99.0 Highly correlated
40 ZNF585A 47 99.0 Highly correlated
41 ZNF506 46 28.9 Weakly correlated
42 ZNF589 46 28.9 Weakly correlated
43 ZNF140 45 99.0 Highly correlated
44 ZNF251 44 94.0 Moderately correlated
45 ZNF197 35 99.0 Highly correlated
46 ZNF549 35 87.0 Moderately correlated
47 ZNF584 33 99.0 Highly correlated
48 ZNF75D 33 94.0 Moderately correlated
49 ZNF585B 28 99.0 Highly correlated
50 ZNF486 27 8.6 Weakly correlated
51 ZNF547 27 74.0 Weakly correlated
52 ZFP69 25 99.0 Highly correlated
53 ZNF202 25 160.0 Weakly correlated
54 ZNF320 23 28.9 Weakly correlated
55 ZNF441 23 43.0 Weakly correlated
56 ZNF792 23 94.0 Moderately correlated
57 ZNF519 22 19.6 Weakly correlated
58 ZNF583 22 99.0 Highly correlated
59 ZKSCAN8 21 160.0 Weakly correlated
60 ZNF274 21 99.0 Highly correlated
61 ZNF471 21 94.0 Moderately correlated
62 ZNF677 18 99.0 Highly correlated
63 ZFP90 17 99.0 Highly correlated
64 ZNF485 17 94.0 Moderately correlated
65 ZNF597 16 94.0 Moderately correlated
66 ZNF701 16 28.9 Weakly correlated
67 ZNF735 16 28.9 Weakly correlated
68 ZNF879 16 99.0 Highly correlated
69 ZNF273 15 28.9 Weakly correlated
70 ZNF425 15 94.0 Moderately correlated
71 ZNF8 15 99.0 Highly correlated
72 ZNF169 14 94.0 Moderately correlated
73 ZNF614 14 99.0 Highly correlated
74 ZNF823 14 43.0 Weakly correlated
75 ZFP57 13 87.0 Moderately correlated
76 ZNF528 13 43.0 Weakly correlated
77 ZNF707 12 74.0 Weakly correlated
78 ZNF483 11 99.0 Highly correlated
79 ZNF230 10 28.9 Weakly correlated
80 ZNF429 10 28.9 Weakly correlated
81 ZNF641 10 99.0 Highly correlated
82 ZNF84 10 99.0 Highly correlated
83 ZNF10 9 99.0 Highly correlated
84 ZNF211 9 94.0 Moderately correlated
85 ZNF284 9 43.0 Weakly correlated
86 ZNF671 9 94.0 Moderately correlated
87 ZNF695 9 28.9 Weakly correlated
88 ZNF264 8 99.0 Highly correlated
89 ZNF334 7 99.0 Highly correlated
90 ZNF33A 7 99.0 Highly correlated
91 ZNF350 7 99.0 Highly correlated
92 ZNF440 7 28.9 Weakly correlated
93 ZNF786 7 99.0 Highly correlated
94 ZKSCAN5 6 160.0 Weakly correlated
95 ZNF28 6 28.9 Weakly correlated
96 ZNF454 6 99.0 Highly correlated
97 ZNF45 6 99.0 Highly correlated
98 ZNF468 6 28.9 Weakly correlated
99 ZNF682 6 28.9 Weakly correlated
100 ZNF791 6 87.0 Moderately correlated
101 ZNF100 5 28.9 Weakly correlated
102 ZNF141 5 43.0 Weakly correlated
103 ZNF41 5 99.0 Highly correlated
104 ZNF44 5 43.0 Weakly correlated
105 ZNF674 5 99.0 Highly correlated
106 ZNF700 5 28.9 Weakly correlated
107 ZNF716 5 19.6 Weakly correlated
108 ZNF778 5 74.0 Weakly correlated
109 ZNF816 5 28.9 Weakly correlated
110 ZNF85 5 28.9 Weakly correlated
111 ZFP1 4 99.0 Highly correlated
112 ZNF17 4 69.0 Weakly correlated
113 ZNF510 4 99.0 Highly correlated
114 ZNF570 4 99.0 Highly correlated
115 ZNF627 4 74.0 Weakly correlated
116 ZNF730 4 19.6 Weakly correlated
117 ZNF765 4 8.6 Weakly correlated
118 ZNF845 4 28.9 Weakly correlated
119 ZNF224 3 69.0 Weakly correlated
120 ZNF225 3 74.0 Weakly correlated
121 ZNF253 3 19.6 Weakly correlated
122 ZNF282 3 319.0 Weakly correlated
123 ZNF30 3 94.0 Moderately correlated
124 ZNF331 3 94.0 Moderately correlated
125 ZNF43 3 43.0 Weakly correlated
126 ZNF560 3 43.0 Weakly correlated
127 ZNF563 3 28.9 Weakly correlated
128 ZNF573 3 94.0 Moderately correlated
129 ZNF616 3 43.0 Weakly correlated
130 ZNF667 3 99.0 Highly correlated
131 ZNF780A 3 43.0 Weakly correlated
132 ZNF808 3 19.6 Weakly correlated
133 ZNF81 3 99.0 Highly correlated
134 ZNF878 3 43.0 Weakly correlated
135 ZNF93 3 8.6 Weakly correlated
136 ZFP14 2 99.0 Highly correlated
137 ZFP82 2 99.0 Highly correlated
138 ZIK1 2 87.0 Moderately correlated
139 ZNF135 2 94.0 Moderately correlated
140 ZNF235 2 99.0 Highly correlated
141 ZNF418 2 43.0 Weakly correlated
142 ZNF559 2 74.0 Weakly correlated
143 ZNF562 2 28.9 Weakly correlated
144 ZNF568 2 99.0 Highly correlated
145 ZNF586 2 43.0 Weakly correlated
146 ZNF626 2 0.0 Weakly correlated
147 ZNF669 2 43.0 Weakly correlated
148 ZNF675 2 8.6 Weakly correlated
149 ZNF736 2 43.0 Weakly correlated
150 ZNF799 2 43.0 Weakly correlated
151 ZNF860 2 0.0 Weakly correlated
152 ZKSCAN3 1 99.0 Highly correlated
153 ZNF124 1 43.0 Weakly correlated
154 ZNF12 1 99.0 Highly correlated
155 ZNF154 1 94.0 Moderately correlated
156 ZNF177 1 94.0 Moderately correlated
157 ZNF214 1 99.0 Highly correlated
158 ZNF222 1 43.0 Weakly correlated
159 ZNF223 1 43.0 Weakly correlated
160 ZNF250 1 99.0 Highly correlated
161 ZNF283 1 99.0 Highly correlated
162 ZNF343 1 74.0 Weakly correlated
163 ZNF347 1 43.0 Weakly correlated
164 ZNF34 1 99.0 Highly correlated
165 ZNF354B 1 99.0 Highly correlated
166 ZNF354C 1 99.0 Highly correlated
167 ZNF445 1 99.0 Highly correlated
168 ZNF460 1 74.0 Weakly correlated
169 ZNF480 1 43.0 Weakly correlated
170 ZNF543 1 99.0 Highly correlated
171 ZNF555 1 94.0 Moderately correlated
172 ZNF557 1 15.2 Weakly correlated
173 ZNF561 1 43.0 Weakly correlated
174 ZNF565 1 99.0 Highly correlated
175 ZNF578 1 15.2 Weakly correlated
176 ZNF611 1 19.6 Weakly correlated
177 ZNF689 1 99.0 Highly correlated
178 ZNF699 1 99.0 Highly correlated
179 ZNF747 1 43.0 Weakly correlated
180 ZNF780B 1 74.0 Weakly correlated
181 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 352 99.0 Highly correlated
2 ZNF26 260 99.0 Highly correlated
3 ZIM3 200 87.0 Moderately correlated
4 ZNF382 198 99.0 Highly correlated
5 ZNF133 183 99.0 Highly correlated
6 ZNF136 180 74.0 Weakly correlated
7 ZNF793 172 99.0 Highly correlated
8 ZNF354A 132 99.0 Highly correlated
9 ZNF160 123 74.0 Weakly correlated
10 ZNF567 119 99.0 Highly correlated
11 ZNF490 112 43.0 Weakly correlated
12 ZNF680 70 28.9 Weakly correlated
13 ZNF558 54 99.0 Highly correlated
14 ZFP28 53 99.0 Highly correlated
15 ZNF101 44 43.0 Weakly correlated
16 ZNF723 43 15.2 Weakly correlated
17 ZNF248 41 99.0 Highly correlated
18 ZNF766 41 43.0 Weakly correlated
19 ZNF479 39 6.4 Weakly correlated
20 ZNF534 34 19.6 Weakly correlated
21 ZNF585A 34 99.0 Highly correlated
22 ZNF287 32 99.0 Highly correlated
23 ZNF263 31 180.0 Weakly correlated
24 ZNF140 26 99.0 Highly correlated
25 ZNF257 22 0.0 Weakly correlated
26 ZFP69 21 99.0 Highly correlated
27 ZNF705D 15 28.9 Weakly correlated
28 ZNF705B 15 28.9 Weakly correlated
29 ZFP90 13 99.0 Highly correlated
30 ZNF202 12 160.0 Weakly correlated
31 ZNF679 12 28.9 Weakly correlated
32 ZNF75D 12 94.0 Moderately correlated
33 ZNF792 11 94.0 Moderately correlated
34 ZNF879 11 99.0 Highly correlated
35 ZNF485 11 94.0 Moderately correlated
36 ZNF506 10 28.9 Weakly correlated
37 ZNF549 10 87.0 Moderately correlated
38 ZNF18 10 160.0 Weakly correlated
39 ZNF677 10 99.0 Highly correlated
40 ZNF10 8 99.0 Highly correlated
41 ZNF251 7 94.0 Moderately correlated
42 ZNF610 7 28.9 Weakly correlated
43 ZNF641 7 99.0 Highly correlated
44 ZNF483 7 99.0 Highly correlated
45 ZNF585B 6 99.0 Highly correlated
46 ZNF735 6 28.9 Weakly correlated
47 ZNF92 6 28.9 Weakly correlated
48 ZNF597 6 94.0 Moderately correlated
49 ZNF701 6 28.9 Weakly correlated
50 ZNF324 6 99.0 Highly correlated
51 ZFP57 5 87.0 Moderately correlated
52 ZNF197 5 99.0 Highly correlated
53 ZNF528 5 43.0 Weakly correlated
54 ZNF211 5 94.0 Moderately correlated
55 ZNF264 5 99.0 Highly correlated
56 ZNF671 5 94.0 Moderately correlated
57 ZFP37 4 99.0 Highly correlated
58 ZFP69B 4 99.0 Highly correlated
59 ZNF394 4 99.0 Highly correlated
60 ZNF350 4 99.0 Highly correlated
61 ZNF589 4 28.9 Weakly correlated
62 ZNF320 4 28.9 Weakly correlated
63 ZNF584 4 99.0 Highly correlated
64 ZKSCAN5 3 160.0 Weakly correlated
65 ZNF141 3 43.0 Weakly correlated
66 ZNF169 3 94.0 Moderately correlated
67 ZNF573 3 94.0 Moderately correlated
68 ZNF45 3 99.0 Highly correlated
69 ZNF81 3 99.0 Highly correlated
70 ZNF823 3 43.0 Weakly correlated
71 ZNF84 3 99.0 Highly correlated
72 ZNF667 3 99.0 Highly correlated
73 ZNF175 3 94.0 Moderately correlated
74 ZNF33A 3 99.0 Highly correlated
75 ZNF425 3 94.0 Moderately correlated
76 ZNF440 3 28.9 Weakly correlated
77 ZNF583 3 99.0 Highly correlated
78 ZNF8 3 99.0 Highly correlated
79 ZNF471 3 94.0 Moderately correlated
80 ZFP1 2 99.0 Highly correlated
81 ZKSCAN1 2 160.0 Weakly correlated
82 ZKSCAN8 2 160.0 Weakly correlated
83 ZNF675 2 8.6 Weakly correlated
84 ZNF716 2 19.6 Weakly correlated
85 ZNF85 2 28.9 Weakly correlated
86 ZNF674 2 99.0 Highly correlated
87 ZNF273 2 28.9 Weakly correlated
88 ZNF2 2 99.0 Highly correlated
89 ZNF44 2 43.0 Weakly correlated
90 ZFP82 1 99.0 Highly correlated
91 ZIK1 1 87.0 Moderately correlated
92 ZNF347 1 43.0 Weakly correlated
93 ZNF486 1 8.6 Weakly correlated
94 ZNF561 1 43.0 Weakly correlated
95 ZNF780A 1 43.0 Weakly correlated
96 ZNF230 1 28.9 Weakly correlated
97 ZNF30 1 94.0 Moderately correlated
98 ZNF429 1 28.9 Weakly correlated
99 ZNF554 1 99.0 Highly correlated
100 ZNF578 1 15.2 Weakly correlated
101 ZNF799 1 43.0 Weakly correlated
102 ZNF559 1 74.0 Weakly correlated
103 ZNF695 1 28.9 Weakly correlated
104 ZNF700 1 28.9 Weakly correlated
105 ZNF707 1 74.0 Weakly correlated
106 ZNF791 1 87.0 Moderately correlated
107 ZNF182 1 99.0 Highly correlated
108 ZNF468 1 28.9 Weakly correlated
109 ZNF626 1 0.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF101 43.0 Weakly correlated
2 ZNF133 99.0 Highly correlated
3 ZNF136 74.0 Weakly correlated
4 ZNF140 99.0 Highly correlated
5 ZNF18 160.0 Weakly correlated
6 ZNF202 160.0 Weakly correlated
7 ZNF248 99.0 Highly correlated
8 ZNF251 94.0 Moderately correlated
9 ZNF257 0.0 Weakly correlated
10 ZNF26 99.0 Highly correlated
11 ZNF287 99.0 Highly correlated
12 ZNF317 99.0 Highly correlated
13 ZNF483 99.0 Highly correlated
14 ZNF490 43.0 Weakly correlated
15 ZNF567 99.0 Highly correlated
16 ZNF597 94.0 Moderately correlated
17 ZNF610 28.9 Weakly correlated
18 ZNF641 99.0 Highly correlated
19 ZNF680 28.9 Weakly correlated
20 ZNF701 28.9 Weakly correlated
21 ZNF723 15.2 Weakly correlated
22 ZNF75D 94.0 Moderately correlated
23 ZNF792 94.0 Moderately correlated
24 ZNF793 99.0 Highly correlated
25 ZNF92 28.9 Weakly correlated