ZRdb KZFP & Repeats
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LINE_L1MEB_5END

  • Name
    L1MEB_5END
  • Repbase
    L1MEB_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000774
Description :

5' end of L1ME1 or L1ME2 LINE1. Average divergence from consensus is26%. L1MEB_5 is 70% similar to L1MDA_5 sequence.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
caganttccgcttccggtaatggcggagtaagctcctatcggaccaaccctcccgcagataacaactataaactctggacaaaatacaaaaaacaactacctgaaggcactggagagcgaccaaaagcaggcaganactggaggggagtcgacacttggaagaagggaacggcacngggtgagttcccatttttacggcttttngcctgagggcaggccncagtcggtgcgncgtacaggtggctaaaactccagtagaaaacccgcagtcttnctggcttgaagaaccagaggacagagttcggggcaaccacagccgctggaaagtgagggggaaatcccggaaaggagagagccagagagaggagccccaaattctgcgtataaactctgcccaaatctctggctgacccctgaaccacgcatgcgcggggcagactccaagcagcccagctaaagataaaagaactgaactgagatttnagctgccgcccaagagacagagtttgnagtttgagtccagccaagttaactgcctgctaaaacaaaanaancaacactcttcagaggaanataacagaatccagagtctctacaacgtancattcacaatgtccaggatacaatccnaaaattatncnagatangaagaaacaggaaaaatgtgacccatnctcaagagaaaagaaaatagaaaccgaccccgagatgacccagatgttggaattagcagacaaggactttaaagcagctattataaatatgttcaanganntaaaggaaaatatgctcataatgaatgaaaagataggaaatctcagcagagaaatagaaactataaaaagaaccaaatggaaattctagaactgaaaaatacaatatctgaaataaaaaattcactggatgggcttaacagcagantggagatgacagaggaaagagtcagtgaacttgaagatagatcaatagaaattatccaatctgaagaacagagagaaaaaanatttaaaaaaaaagagcagagcctcagngacctgtgggacaatatcaaaaggtctaacatacgtgtaattggagtcccagaaggag
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 106 99.0 Highly correlated
2 ZIM3 38 87.0 Moderately correlated
3 ZNF766 25 43.0 Weakly correlated
4 ZNF394 22 99.0 Highly correlated
5 ZNF26 21 99.0 Highly correlated
6 ZNF317 21 99.0 Highly correlated
7 ZNF793 16 99.0 Highly correlated
8 ZNF45 16 99.0 Highly correlated
9 ZNF680 15 28.9 Weakly correlated
10 ZNF558 15 99.0 Highly correlated
11 ZNF567 14 99.0 Highly correlated
12 ZNF133 13 99.0 Highly correlated
13 ZNF263 12 180.0 Weakly correlated
14 ZNF160 11 74.0 Weakly correlated
15 ZNF705B 11 28.9 Weakly correlated
16 ZFP28 11 99.0 Highly correlated
17 ZNF589 10 28.9 Weakly correlated
18 ZNF679 10 28.9 Weakly correlated
19 ZNF92 10 28.9 Weakly correlated
20 ZNF175 10 94.0 Moderately correlated
21 ZNF534 9 19.6 Weakly correlated
22 ZNF479 8 6.4 Weakly correlated
23 ZFP37 8 99.0 Highly correlated
24 ZNF585A 8 99.0 Highly correlated
25 ZNF723 7 15.2 Weakly correlated
26 ZNF75D 7 94.0 Moderately correlated
27 ZFP69B 7 99.0 Highly correlated
28 ZNF101 7 43.0 Weakly correlated
29 ZNF324 6 99.0 Highly correlated
30 ZNF182 6 99.0 Highly correlated
31 ZNF2 5 99.0 Highly correlated
32 ZNF610 5 28.9 Weakly correlated
33 ZNF197 4 99.0 Highly correlated
34 ZKSCAN8 4 160.0 Weakly correlated
35 ZNF18 4 160.0 Weakly correlated
36 ZNF257 4 0.0 Weakly correlated
37 ZNF705D 4 28.9 Weakly correlated
38 ZNF506 4 28.9 Weakly correlated
39 ZNF140 4 99.0 Highly correlated
40 ZNF597 4 94.0 Moderately correlated
41 ZNF248 4 99.0 Highly correlated
42 ZNF701 4 28.9 Weakly correlated
43 ZNF136 3 74.0 Weakly correlated
44 ZFP14 3 99.0 Highly correlated
45 ZNF584 3 99.0 Highly correlated
46 ZNF490 3 43.0 Weakly correlated
47 ZNF486 3 8.6 Weakly correlated
48 ZNF485 3 94.0 Moderately correlated
49 ZNF429 2 28.9 Weakly correlated
50 ZKSCAN1 2 160.0 Weakly correlated
51 ZNF425 2 94.0 Moderately correlated
52 ZNF251 2 94.0 Moderately correlated
53 ZNF354A 2 99.0 Highly correlated
54 ZNF549 2 87.0 Moderately correlated
55 ZNF808 2 19.6 Weakly correlated
56 ZNF264 2 99.0 Highly correlated
57 ZNF44 2 43.0 Weakly correlated
58 ZNF563 2 28.9 Weakly correlated
59 ZNF585B 2 99.0 Highly correlated
60 ZNF695 2 28.9 Weakly correlated
61 ZNF273 2 28.9 Weakly correlated
62 ZNF84 1 99.0 Highly correlated
63 ZKSCAN5 1 160.0 Weakly correlated
64 ZNF543 1 99.0 Highly correlated
65 ZNF879 1 99.0 Highly correlated
66 ZNF878 1 43.0 Weakly correlated
67 ZNF823 1 43.0 Weakly correlated
68 ZNF782 1 99.0 Highly correlated
69 ZNF716 1 19.6 Weakly correlated
70 ZNF778 1 74.0 Weakly correlated
71 ZFP57 1 87.0 Moderately correlated
72 ZNF441 1 43.0 Weakly correlated
73 ZNF235 1 99.0 Highly correlated
74 ZNF189 1 99.0 Highly correlated
75 ZNF274 1 99.0 Highly correlated
76 ZNF282 1 319.0 Weakly correlated
77 ZNF287 1 99.0 Highly correlated
78 ZNF337 1 43.0 Weakly correlated
79 ZNF169 1 94.0 Moderately correlated
80 ZNF41 1 99.0 Highly correlated
81 ZNF43 1 43.0 Weakly correlated
82 ZNF649 1 28.9 Weakly correlated
83 ZNF471 1 94.0 Moderately correlated
84 ZNF480 1 43.0 Weakly correlated
85 ZNF519 1 19.6 Weakly correlated
86 ZNF528 1 43.0 Weakly correlated
87 ZNF554 1 99.0 Highly correlated
88 ZNF557 1 15.2 Weakly correlated
89 ZNF573 1 94.0 Moderately correlated
90 ZNF605 1 99.0 Highly correlated
91 ZNF641 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF26 19 99.0 Highly correlated
2 ZIM3 16 87.0 Moderately correlated
3 ZNF567 13 99.0 Highly correlated
4 ZNF160 11 74.0 Weakly correlated
5 ZNF133 11 99.0 Highly correlated
6 ZNF382 11 99.0 Highly correlated
7 ZNF793 10 99.0 Highly correlated
8 ZNF534 8 19.6 Weakly correlated
9 ZFP28 6 99.0 Highly correlated
10 ZNF479 6 6.4 Weakly correlated
11 ZNF558 5 99.0 Highly correlated
12 ZNF101 5 43.0 Weakly correlated
13 ZNF585A 4 99.0 Highly correlated
14 ZNF506 4 28.9 Weakly correlated
15 ZNF766 4 43.0 Weakly correlated
16 ZNF45 4 99.0 Highly correlated
17 ZNF723 4 15.2 Weakly correlated
18 ZNF705B 4 28.9 Weakly correlated
19 ZNF140 3 99.0 Highly correlated
20 ZNF701 3 28.9 Weakly correlated
21 ZNF317 3 99.0 Highly correlated
22 ZNF597 3 94.0 Moderately correlated
23 ZNF248 3 99.0 Highly correlated
24 ZNF273 2 28.9 Weakly correlated
25 ZNF680 2 28.9 Weakly correlated
26 ZNF679 2 28.9 Weakly correlated
27 ZNF75D 2 94.0 Moderately correlated
28 ZNF44 2 43.0 Weakly correlated
29 ZNF263 2 180.0 Weakly correlated
30 ZNF589 2 28.9 Weakly correlated
31 ZNF136 2 74.0 Weakly correlated
32 ZNF92 2 28.9 Weakly correlated
33 ZNF175 2 94.0 Moderately correlated
34 ZNF264 2 99.0 Highly correlated
35 ZFP14 1 99.0 Highly correlated
36 ZNF287 1 99.0 Highly correlated
37 ZNF480 1 43.0 Weakly correlated
38 ZFP57 1 87.0 Moderately correlated
39 ZNF573 1 94.0 Moderately correlated
40 ZNF43 1 43.0 Weakly correlated
41 ZNF782 1 99.0 Highly correlated
42 ZNF324 1 99.0 Highly correlated
43 ZNF705D 1 28.9 Weakly correlated
44 ZNF584 1 99.0 Highly correlated
45 ZNF2 1 99.0 Highly correlated
46 ZKSCAN5 1 160.0 Weakly correlated
47 ZNF695 1 28.9 Weakly correlated
48 ZNF257 1 0.0 Weakly correlated
49 ZNF490 1 43.0 Weakly correlated
50 ZNF549 1 87.0 Moderately correlated
51 ZNF354A 1 99.0 Highly correlated
52 ZNF197 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF567 99.0 Highly correlated
3 ZNF793 99.0 Highly correlated