ZRdb KZFP & Repeats
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LINE_L1MEA_5END

  • Name
    L1MEA_5END
  • Repbase
    L1MEA_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000307
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cagacttccgnttccggtaatggcggagtaagnccctaccggaccaaccctcccgcagaaaacaactataaaacctggacaaaatacaaaaaacaactacttgaaggcactggagagtgaacaaaagcaggcagannctggaggggagtcgacacttggaagaagggagcngcacggagtgagttcccatttctgtggcttttagcctgagggcaggccgcagtcggcgcggcgtacagatggctaaaacntcagtagaaaacccgcagtctttctggcctggagaaccagagaantgaanctagggcaaccacggccgctggaaagagtggggaaaatcccggaaaggaaagagccagagaggggatccccaaattctgtgtataaactctgcccanatctctggctgacccctgaaccacgcatgcgcggagcagactcaaagcagctcagctaaagacaaaagatctgaactgagaccggagctgccgcccaagaaacagagtttgcagttcgagtccagccaagataattgcctgctaaaacaaaagaaacaacactcatcggagaaaaataacagaatccagaatctccacaacntaacattcataatgtccaggatacaatccnaaaattacncgacatacgaagaancaggaaaaatggaacncattctcaagagaaaagaaaatcaaatccgaccccgagatganccagatgttggaattagcagacaaggattttaaagcggctattataactatnctcaatgaagtaaaanaaaatatgctcacaatgaatgaaaagataggaaatctcagcagagaaatagaaacnataaaaagaaccaaatggaaattctagaactgaaaaatacaatatctgaaataaaaaattcactggatggacttaacagcagaatggagatgacagaggaaagagtaagtgaacttgaagatagatcaatagaaattatccaangtgaagaacagagagaaaaaagattnanaaaaaaagagcagagnctcanagacctgttagataatatcaaacggtctaacatacgtgtaattggagtcccagaaggag
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 12 99.0 Highly correlated
2 ZIM3 10 87.0 Moderately correlated
3 ZNF766 10 43.0 Weakly correlated
4 ZNF394 6 99.0 Highly correlated
5 ZNF534 5 19.6 Weakly correlated
6 ZNF75D 5 94.0 Moderately correlated
7 ZNF317 5 99.0 Highly correlated
8 ZNF263 4 180.0 Weakly correlated
9 ZNF680 4 28.9 Weakly correlated
10 ZFP37 3 99.0 Highly correlated
11 ZNF248 3 99.0 Highly correlated
12 ZNF182 3 99.0 Highly correlated
13 ZNF160 3 74.0 Weakly correlated
14 ZFP28 3 99.0 Highly correlated
15 ZKSCAN1 3 160.0 Weakly correlated
16 ZNF92 2 28.9 Weakly correlated
17 ZNF331 2 94.0 Moderately correlated
18 ZNF558 2 99.0 Highly correlated
19 ZNF701 2 28.9 Weakly correlated
20 ZNF705B 2 28.9 Weakly correlated
21 ZNF2 2 99.0 Highly correlated
22 ZNF101 2 43.0 Weakly correlated
23 ZNF133 2 99.0 Highly correlated
24 ZNF287 2 99.0 Highly correlated
25 ZNF28 2 28.9 Weakly correlated
26 ZNF682 1 28.9 Weakly correlated
27 ZNF324 1 99.0 Highly correlated
28 ZNF879 1 99.0 Highly correlated
29 ZNF84 1 99.0 Highly correlated
30 ZNF793 1 99.0 Highly correlated
31 ZNF141 1 43.0 Weakly correlated
32 ZNF723 1 15.2 Weakly correlated
33 ZNF707 1 74.0 Weakly correlated
34 ZNF169 1 94.0 Moderately correlated
35 ZNF197 1 99.0 Highly correlated
36 ZNF695 1 28.9 Weakly correlated
37 ZNF45 1 99.0 Highly correlated
38 ZNF257 1 0.0 Weakly correlated
39 ZNF610 1 28.9 Weakly correlated
40 ZNF585A 1 99.0 Highly correlated
41 ZNF567 1 99.0 Highly correlated
42 ZNF26 1 99.0 Highly correlated
43 ZNF554 1 99.0 Highly correlated
44 ZNF429 1 28.9 Weakly correlated
45 ZNF506 1 28.9 Weakly correlated
46 ZNF485 1 94.0 Moderately correlated
47 ZNF468 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 5 87.0 Moderately correlated
2 ZNF160 3 74.0 Weakly correlated
3 ZNF534 3 19.6 Weakly correlated
4 ZNF382 3 99.0 Highly correlated
5 ZNF248 2 99.0 Highly correlated
6 ZNF75D 2 94.0 Moderately correlated
7 ZFP28 2 99.0 Highly correlated
8 ZNF133 2 99.0 Highly correlated
9 ZNF680 2 28.9 Weakly correlated
10 ZNF585A 1 99.0 Highly correlated
11 ZNF723 1 15.2 Weakly correlated
12 ZNF485 1 94.0 Moderately correlated
13 ZNF879 1 99.0 Highly correlated
14 ZKSCAN1 1 160.0 Weakly correlated
15 ZNF701 1 28.9 Weakly correlated
16 ZNF468 1 28.9 Weakly correlated
17 ZNF101 1 43.0 Weakly correlated
18 ZNF2 1 99.0 Highly correlated
19 ZNF257 1 0.0 Weakly correlated
20 ZNF766 1 43.0 Weakly correlated
21 ZNF45 1 99.0 Highly correlated
22 ZNF26 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats