ZRdb KZFP & Repeats
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LINE_L1ME5_3END

  • Name
    L1ME5_3END
  • Repbase
    L1ME5_3end
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000306
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatctagaatatacaaggaactcctgcaaatcaacaagaaaaagacggnaaccccaatagaaaaatgggcaaaggatatgaacaggcaatttacagaagaggaaacccgaaaggctaacaagcatatgaagagatgctcaaactcattagtaatcagagaaatgcaaattaaaacaacaatgagatatcactttacacctattagactggcaaaaattagaaagctggataatgccaagtgttggcgaggatgtgggganataggaaccctcatgcactgctggtgggagtgtagactggtgcagccattctggagagcaatctggcagtacttagtcaaattaagtatacgcataccctatgacccagcaattccgctcctgggtatatatcccaaagaaattctcacacaggtccataaggggacatgtacgaggatgttcattgcagcgttgtttgtggtggcggggagttggaggcaacctgggtgtccatcactgggagagtggataggtaaaatgtggtggatgcacaccatggagtactatgcagcagttagaagcaacggactagatgtacacatagcaacatggatggatcttaaaaacatagtgctgagtgaaaaaagtaagaaacagaatgagatntataacacaataccatttacgtaaattaaaaatacatgcacacaaaacaacaatacacattttacaagaacacatacaaacaaaaggatacacattaaacacattagaatggttgcctatgggggggaggaagggggagnagggggnagggaataaagggaaagaataaangaataaataaataaaacaagagaggggccttgcacggaccaatgatgataatgtgccatgaactgaggagtatgattaactcaaccctctgcacctgaggtccaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 100 99.0 Highly correlated
2 ZNF263 41 180.0 Weakly correlated
3 ZNF766 31 43.0 Weakly correlated
4 ZNF394 30 99.0 Highly correlated
5 ZNF317 27 99.0 Highly correlated
6 ZIM3 24 87.0 Moderately correlated
7 ZNF705B 22 28.9 Weakly correlated
8 ZFP37 21 99.0 Highly correlated
9 ZNF92 21 28.9 Weakly correlated
10 ZNF140 21 99.0 Highly correlated
11 ZNF18 19 160.0 Weakly correlated
12 ZNF84 17 99.0 Highly correlated
13 ZNF589 14 28.9 Weakly correlated
14 ZNF723 14 15.2 Weakly correlated
15 ZNF680 13 28.9 Weakly correlated
16 ZKSCAN1 13 160.0 Weakly correlated
17 ZNF2 13 99.0 Highly correlated
18 ZNF175 13 94.0 Moderately correlated
19 ZNF679 12 28.9 Weakly correlated
20 ZNF101 12 43.0 Weakly correlated
21 ZNF197 11 99.0 Highly correlated
22 ZNF584 10 99.0 Highly correlated
23 ZNF251 10 94.0 Moderately correlated
24 ZNF324 9 99.0 Highly correlated
25 ZNF534 9 19.6 Weakly correlated
26 ZNF558 9 99.0 Highly correlated
27 ZNF597 9 94.0 Moderately correlated
28 ZFP69B 8 99.0 Highly correlated
29 ZNF610 8 28.9 Weakly correlated
30 ZKSCAN8 8 160.0 Weakly correlated
31 ZNF705D 8 28.9 Weakly correlated
32 ZNF486 7 8.6 Weakly correlated
33 ZNF554 6 99.0 Highly correlated
34 ZNF485 6 94.0 Moderately correlated
35 ZNF479 6 6.4 Weakly correlated
36 ZNF133 6 99.0 Highly correlated
37 ZNF75D 4 94.0 Moderately correlated
38 ZNF274 4 99.0 Highly correlated
39 ZNF41 4 99.0 Highly correlated
40 ZNF707 4 74.0 Weakly correlated
41 ZNF792 4 94.0 Moderately correlated
42 ZNF585B 3 99.0 Highly correlated
43 ZNF26 3 99.0 Highly correlated
44 ZNF264 3 99.0 Highly correlated
45 ZNF202 3 160.0 Weakly correlated
46 ZNF701 3 28.9 Weakly correlated
47 ZNF585A 3 99.0 Highly correlated
48 ZNF786 3 99.0 Highly correlated
49 ZNF793 3 99.0 Highly correlated
50 ZNF320 3 28.9 Weakly correlated
51 ZNF184 3 99.0 Highly correlated
52 ZNF808 3 19.6 Weakly correlated
53 ZNF141 2 43.0 Weakly correlated
54 ZNF19 2 99.0 Highly correlated
55 ZNF248 2 99.0 Highly correlated
56 ZNF182 2 99.0 Highly correlated
57 ZNF169 2 94.0 Moderately correlated
58 ZNF674 2 99.0 Highly correlated
59 ZNF506 2 28.9 Weakly correlated
60 ZNF490 2 43.0 Weakly correlated
61 ZNF845 2 28.9 Weakly correlated
62 ZNF471 2 94.0 Moderately correlated
63 ZNF28 2 28.9 Weakly correlated
64 ZKSCAN5 2 160.0 Weakly correlated
65 ZNF350 2 99.0 Highly correlated
66 ZNF816 2 28.9 Weakly correlated
67 ZFP90 1 99.0 Highly correlated
68 ZNF8 1 99.0 Highly correlated
69 ZFP28 1 99.0 Highly correlated
70 ZNF735 1 28.9 Weakly correlated
71 ZNF74 1 99.0 Highly correlated
72 ZNF81 1 99.0 Highly correlated
73 ZNF778 1 74.0 Weakly correlated
74 ZNF799 1 43.0 Weakly correlated
75 ZNF436 1 180.0 Weakly correlated
76 ZNF136 1 74.0 Weakly correlated
77 ZNF10 1 99.0 Highly correlated
78 ZNF160 1 74.0 Weakly correlated
79 ZNF283 1 99.0 Highly correlated
80 ZNF284 1 43.0 Weakly correlated
81 ZNF331 1 94.0 Moderately correlated
82 ZNF334 1 99.0 Highly correlated
83 ZNF347 1 43.0 Weakly correlated
84 ZNF429 1 28.9 Weakly correlated
85 ZNF433 1 43.0 Weakly correlated
86 ZNF681 1 28.9 Weakly correlated
87 ZNF43 1 43.0 Weakly correlated
88 ZNF441 1 43.0 Weakly correlated
89 ZNF519 1 19.6 Weakly correlated
90 ZNF528 1 43.0 Weakly correlated
91 ZNF549 1 87.0 Moderately correlated
92 ZNF559 1 74.0 Weakly correlated
93 ZNF567 1 99.0 Highly correlated
94 ZNF641 1 99.0 Highly correlated
95 ZNF671 1 94.0 Moderately correlated
96 ZNF677 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 12 87.0 Moderately correlated
2 ZNF84 12 99.0 Highly correlated
3 ZNF101 9 43.0 Weakly correlated
4 ZNF382 8 99.0 Highly correlated
5 ZNF317 6 99.0 Highly correlated
6 ZNF92 5 28.9 Weakly correlated
7 ZNF680 5 28.9 Weakly correlated
8 ZNF534 5 19.6 Weakly correlated
9 ZNF251 4 94.0 Moderately correlated
10 ZNF723 4 15.2 Weakly correlated
11 ZNF324 4 99.0 Highly correlated
12 ZNF705B 4 28.9 Weakly correlated
13 ZNF18 4 160.0 Weakly correlated
14 ZNF140 3 99.0 Highly correlated
15 ZNF479 3 6.4 Weakly correlated
16 ZNF705D 3 28.9 Weakly correlated
17 ZNF133 3 99.0 Highly correlated
18 ZNF485 2 94.0 Moderately correlated
19 ZNF554 2 99.0 Highly correlated
20 ZNF26 2 99.0 Highly correlated
21 ZNF264 2 99.0 Highly correlated
22 ZNF263 2 180.0 Weakly correlated
23 ZNF679 2 28.9 Weakly correlated
24 ZNF41 2 99.0 Highly correlated
25 ZNF793 2 99.0 Highly correlated
26 ZNF766 2 43.0 Weakly correlated
27 ZKSCAN5 1 160.0 Weakly correlated
28 ZNF671 1 94.0 Moderately correlated
29 ZNF10 1 99.0 Highly correlated
30 ZNF169 1 94.0 Moderately correlated
31 ZNF677 1 99.0 Highly correlated
32 ZNF641 1 99.0 Highly correlated
33 ZNF202 1 160.0 Weakly correlated
34 ZNF350 1 99.0 Highly correlated
35 ZNF567 1 99.0 Highly correlated
36 ZNF75D 1 94.0 Moderately correlated
37 ZNF558 1 99.0 Highly correlated
38 ZNF486 1 8.6 Weakly correlated
39 ZNF585A 1 99.0 Highly correlated
40 ZNF816 1 28.9 Weakly correlated
41 ZNF701 1 28.9 Weakly correlated
42 ZNF610 1 28.9 Weakly correlated
43 ZNF674 1 99.0 Highly correlated
44 ZNF707 1 74.0 Weakly correlated
45 ZNF735 1 28.9 Weakly correlated
46 ZNF799 1 43.0 Weakly correlated
47 ZNF74 1 99.0 Highly correlated
48 ZNF81 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF84 99.0 Highly correlated