ZRdb KZFP & Repeats
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LINE_L1ME4C_3END

  • Name
    L1ME4C_3END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000305
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatctntantatataaagagctcattcaaattgataagaaaaanatcaagaccccaatagataaatgggcaaaggacatgaacagacaattcacanaagaggaaatacaantagtaaacaaacacatggaaaaatgttcaacctcgctagtaatcaaagaaatgcaaattaaagcaacaatgagataccattttacgcctattaaattagcaaaaatttaaaaaattgataatacccaatgctggcgaggntgcggtgaaactggtacnctcatacattgctggtggcantgtaaattggtacaacccttttggaaagcaatttggcaatacgtatcaagagccataaaaatgttcataccctttgacccagtaattccacttctgggaatttatcctaaggaaataattcaaaagaaggaaaaagctatatgcacgaagatgttcattgcagcgttatttataatagcgaaaaattggaaacaacctaaatgtccaacaataggggaatggttaagtaaattatggtacatcnactcgatggaatattatgcagccattaaaaatgataattatgaagactatgtagcaacatggaaaatgtttatgatataatgttaagtgaaaaaagcagaatacaaaattgtatntacgctatgattacaactatgtaaaaattacgtatgcatatggacaaggactggaagggaacacgnaaaaatgaaaacagttgatttgttagggtggtgggattatgggtgantttttcttctttttnaaaattttctttaatgttgttataatgttgtttgtgcaataaataaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 279 99.0 Highly correlated
2 ZNF394 107 99.0 Highly correlated
3 ZNF2 64 99.0 Highly correlated
4 ZFP37 62 99.0 Highly correlated
5 ZNF18 61 160.0 Weakly correlated
6 ZNF766 60 43.0 Weakly correlated
7 ZNF251 58 94.0 Moderately correlated
8 ZNF317 46 99.0 Highly correlated
9 ZFP69B 45 99.0 Highly correlated
10 ZNF263 42 180.0 Weakly correlated
11 ZIM3 40 87.0 Moderately correlated
12 ZNF101 38 43.0 Weakly correlated
13 ZNF324 38 99.0 Highly correlated
14 ZNF175 35 94.0 Moderately correlated
15 ZNF589 32 28.9 Weakly correlated
16 ZNF680 29 28.9 Weakly correlated
17 ZNF610 28 28.9 Weakly correlated
18 ZKSCAN1 26 160.0 Weakly correlated
19 ZNF558 26 99.0 Highly correlated
20 ZKSCAN8 22 160.0 Weakly correlated
21 ZNF74 22 99.0 Highly correlated
22 ZNF197 19 99.0 Highly correlated
23 ZNF723 18 15.2 Weakly correlated
24 ZNF486 17 8.6 Weakly correlated
25 ZNF679 17 28.9 Weakly correlated
26 ZNF705B 17 28.9 Weakly correlated
27 ZNF584 16 99.0 Highly correlated
28 ZNF554 15 99.0 Highly correlated
29 ZFP69 12 99.0 Highly correlated
30 ZNF471 11 94.0 Moderately correlated
31 ZNF528 11 43.0 Weakly correlated
32 ZNF534 11 19.6 Weakly correlated
33 ZNF701 11 28.9 Weakly correlated
34 ZNF92 11 28.9 Weakly correlated
35 ZNF597 10 94.0 Moderately correlated
36 ZNF705D 10 28.9 Weakly correlated
37 ZNF778 10 74.0 Weakly correlated
38 ZNF792 10 94.0 Moderately correlated
39 ZNF84 10 99.0 Highly correlated
40 ZFP28 9 99.0 Highly correlated
41 ZNF8 9 99.0 Highly correlated
42 ZNF140 8 99.0 Highly correlated
43 ZNF479 8 6.4 Weakly correlated
44 ZNF257 7 0.0 Weakly correlated
45 ZNF133 6 99.0 Highly correlated
46 ZNF490 6 43.0 Weakly correlated
47 ZFP57 5 87.0 Moderately correlated
48 ZNF264 5 99.0 Highly correlated
49 ZNF441 5 43.0 Weakly correlated
50 ZNF549 5 87.0 Moderately correlated
51 ZNF75D 5 94.0 Moderately correlated
52 ZNF160 4 74.0 Weakly correlated
53 ZNF182 4 99.0 Highly correlated
54 ZNF214 4 99.0 Highly correlated
55 ZNF248 4 99.0 Highly correlated
56 ZNF26 4 99.0 Highly correlated
57 ZNF274 4 99.0 Highly correlated
58 ZNF304 4 99.0 Highly correlated
59 ZNF331 4 94.0 Moderately correlated
60 ZNF519 4 19.6 Weakly correlated
61 ZNF641 4 99.0 Highly correlated
62 ZNF695 4 28.9 Weakly correlated
63 ZNF707 4 74.0 Weakly correlated
64 ZNF735 4 28.9 Weakly correlated
65 ZNF793 4 99.0 Highly correlated
66 ZKSCAN5 3 160.0 Weakly correlated
67 ZNF136 3 74.0 Weakly correlated
68 ZNF320 3 28.9 Weakly correlated
69 ZNF350 3 99.0 Highly correlated
70 ZNF425 3 94.0 Moderately correlated
71 ZNF429 3 28.9 Weakly correlated
72 ZNF485 3 94.0 Moderately correlated
73 ZNF547 3 74.0 Weakly correlated
74 ZNF585A 3 99.0 Highly correlated
75 ZNF75A 3 94.0 Moderately correlated
76 ZFP30 2 99.0 Highly correlated
77 ZNF141 2 43.0 Weakly correlated
78 ZNF224 2 69.0 Weakly correlated
79 ZNF282 2 319.0 Weakly correlated
80 ZNF468 2 28.9 Weakly correlated
81 ZNF506 2 28.9 Weakly correlated
82 ZNF583 2 99.0 Highly correlated
83 ZNF585B 2 99.0 Highly correlated
84 ZNF671 2 94.0 Moderately correlated
85 ZNF786 2 99.0 Highly correlated
86 ZNF85 2 28.9 Weakly correlated
87 ZIK1 1 87.0 Moderately correlated
88 ZNF10 1 99.0 Highly correlated
89 ZNF189 1 99.0 Highly correlated
90 ZNF202 1 160.0 Weakly correlated
91 ZNF212 1 160.0 Weakly correlated
92 ZNF230 1 28.9 Weakly correlated
93 ZNF273 1 28.9 Weakly correlated
94 ZNF284 1 43.0 Weakly correlated
95 ZNF287 1 99.0 Highly correlated
96 ZNF28 1 28.9 Weakly correlated
97 ZNF30 1 94.0 Moderately correlated
98 ZNF343 1 74.0 Weakly correlated
99 ZNF347 1 43.0 Weakly correlated
100 ZNF417 1 28.9 Weakly correlated
101 ZNF433 1 43.0 Weakly correlated
102 ZNF44 1 43.0 Weakly correlated
103 ZNF480 1 43.0 Weakly correlated
104 ZNF510 1 99.0 Highly correlated
105 ZNF563 1 28.9 Weakly correlated
106 ZNF573 1 94.0 Moderately correlated
107 ZNF607 1 43.0 Weakly correlated
108 ZNF613 1 99.0 Highly correlated
109 ZNF674 1 99.0 Highly correlated
110 ZNF716 1 19.6 Weakly correlated
111 ZNF736 1 43.0 Weakly correlated
112 ZNF761 1 19.6 Weakly correlated
113 ZNF776 1 43.0 Weakly correlated
114 ZNF780A 1 43.0 Weakly correlated
115 ZNF808 1 19.6 Weakly correlated
116 ZNF816 1 28.9 Weakly correlated
117 ZNF823 1 43.0 Weakly correlated
118 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 30 94.0 Moderately correlated
2 ZNF382 15 99.0 Highly correlated
3 ZIM3 14 87.0 Moderately correlated
4 ZNF101 13 43.0 Weakly correlated
5 ZNF74 13 99.0 Highly correlated
6 ZFP69 9 99.0 Highly correlated
7 ZNF84 7 99.0 Highly correlated
8 ZNF680 6 28.9 Weakly correlated
9 ZNF723 6 15.2 Weakly correlated
10 ZNF610 6 28.9 Weakly correlated
11 ZNF317 6 99.0 Highly correlated
12 ZNF486 6 8.6 Weakly correlated
13 ZNF8 4 99.0 Highly correlated
14 ZNF766 4 43.0 Weakly correlated
15 ZNF18 4 160.0 Weakly correlated
16 ZNF534 4 19.6 Weakly correlated
17 ZFP28 4 99.0 Highly correlated
18 ZNF160 3 74.0 Weakly correlated
19 ZNF707 3 74.0 Weakly correlated
20 ZNF701 3 28.9 Weakly correlated
21 ZNF792 3 94.0 Moderately correlated
22 ZNF589 3 28.9 Weakly correlated
23 ZNF471 3 94.0 Moderately correlated
24 ZNF133 3 99.0 Highly correlated
25 ZNF793 3 99.0 Highly correlated
26 ZNF705D 2 28.9 Weakly correlated
27 ZNF75D 2 94.0 Moderately correlated
28 ZNF485 2 94.0 Moderately correlated
29 ZNF197 2 99.0 Highly correlated
30 ZNF490 2 43.0 Weakly correlated
31 ZNF558 2 99.0 Highly correlated
32 ZNF584 2 99.0 Highly correlated
33 ZNF679 2 28.9 Weakly correlated
34 ZNF528 2 43.0 Weakly correlated
35 ZNF248 2 99.0 Highly correlated
36 ZNF175 2 94.0 Moderately correlated
37 ZNF263 2 180.0 Weakly correlated
38 ZNF479 2 6.4 Weakly correlated
39 ZNF136 2 74.0 Weakly correlated
40 ZNF92 2 28.9 Weakly correlated
41 ZNF705B 2 28.9 Weakly correlated
42 ZNF140 2 99.0 Highly correlated
43 ZNF549 1 87.0 Moderately correlated
44 ZNF202 1 160.0 Weakly correlated
45 ZNF141 1 43.0 Weakly correlated
46 ZNF350 1 99.0 Highly correlated
47 ZFP37 1 99.0 Highly correlated
48 ZNF554 1 99.0 Highly correlated
49 ZNF10 1 99.0 Highly correlated
50 ZNF736 1 43.0 Weakly correlated
51 ZKSCAN8 1 160.0 Weakly correlated
52 ZNF425 1 94.0 Moderately correlated
53 ZNF778 1 74.0 Weakly correlated
54 ZNF585B 1 99.0 Highly correlated
55 ZNF716 1 19.6 Weakly correlated
56 ZNF735 1 28.9 Weakly correlated
57 ZNF282 1 319.0 Weakly correlated
58 ZNF429 1 28.9 Weakly correlated
59 ZNF44 1 43.0 Weakly correlated
60 ZNF320 1 28.9 Weakly correlated
61 ZNF287 1 99.0 Highly correlated
62 ZNF26 1 99.0 Highly correlated
63 ZNF257 1 0.0 Weakly correlated
64 ZNF347 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF251 94.0 Moderately correlated
2 ZNF486 8.6 Weakly correlated
3 ZNF610 28.9 Weakly correlated
4 ZNF84 99.0 Highly correlated