ZRdb KZFP & Repeats
...

LINE_L1ME4B_3END

  • Name
    L1ME4B_3END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000304
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatttccctaatatataaagagctcctacaaatcaataagaaaaagaccaacaacccaatagaaaaatgggcaaaggatatgaacagacagttcacagaaaaggaaatacaaatggctcttaaacatatgaaaagatgctcaacctcactcataataagagaaatgcaaattaaaactacactgagataccatttttcacctatcagattggcaaagatcaaaaagtttgataacacactgtgttggcgagggtgtggggaaacaggcactctcatacattgctggtgggagtgtaaattggtacaacctctatggagggcaatttggcaatatctatcaaaattacaaatgcacataccctttgacccagcaattccacttctaggaatttatcctacagatatactcgcacatgtgcgaaatgacgtatgtacaaggttattcattgcagcattgtttgtaatagcaaaagattggaaacaacctaaatgtccatcaataggggactggttaaataaattatggtacatccatacaatggaatactatgcagccgtaaaaaagaatgaggaagctctntatgtactgatatggaangatctccaagatatattgttaagtgaaaaaagcaaggtgcagaacagtgtgtatagtatgctaccatttgtgtaaaaagaggggaaagaaaatatatatatatatttgcttgtatatgcatagaatatctctggaaggatacacaagaaactggtaacantggttgcctccggggaggggaactgggtggctgggggacaggggtgggagggagacttttcactgtatacccttttgtaccttttgaattttgaaccatgtgaatgtattacctattcaaaaaataaataaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 553 99.0 Highly correlated
2 ZNF394 178 99.0 Highly correlated
3 ZNF766 167 43.0 Weakly correlated
4 ZNF251 132 94.0 Moderately correlated
5 ZNF317 130 99.0 Highly correlated
6 ZNF2 128 99.0 Highly correlated
7 ZNF263 127 180.0 Weakly correlated
8 ZIM3 119 87.0 Moderately correlated
9 ZNF486 110 8.6 Weakly correlated
10 ZFP37 103 99.0 Highly correlated
11 ZNF680 100 28.9 Weakly correlated
12 ZNF18 96 160.0 Weakly correlated
13 ZNF101 73 43.0 Weakly correlated
14 ZNF705B 73 28.9 Weakly correlated
15 ZFP69 71 99.0 Highly correlated
16 ZKSCAN1 71 160.0 Weakly correlated
17 ZNF8 68 99.0 Highly correlated
18 ZNF589 62 28.9 Weakly correlated
19 ZNF723 62 15.2 Weakly correlated
20 ZNF679 61 28.9 Weakly correlated
21 ZNF175 58 94.0 Moderately correlated
22 ZFP69B 57 99.0 Highly correlated
23 ZNF534 53 19.6 Weakly correlated
24 ZNF558 49 99.0 Highly correlated
25 ZNF701 47 28.9 Weakly correlated
26 ZNF324 42 99.0 Highly correlated
27 ZNF705D 39 28.9 Weakly correlated
28 ZKSCAN8 38 160.0 Weakly correlated
29 ZNF84 36 99.0 Highly correlated
30 ZNF610 35 28.9 Weakly correlated
31 ZNF92 34 28.9 Weakly correlated
32 ZNF197 33 99.0 Highly correlated
33 ZNF554 33 99.0 Highly correlated
34 ZNF479 32 6.4 Weakly correlated
35 ZNF597 32 94.0 Moderately correlated
36 ZNF257 31 0.0 Weakly correlated
37 ZNF75D 27 94.0 Moderately correlated
38 ZNF140 24 99.0 Highly correlated
39 ZNF133 23 99.0 Highly correlated
40 ZNF584 23 99.0 Highly correlated
41 ZNF182 22 99.0 Highly correlated
42 ZNF585B 21 99.0 Highly correlated
43 ZNF793 21 99.0 Highly correlated
44 ZNF485 20 94.0 Moderately correlated
45 ZNF547 20 74.0 Weakly correlated
46 ZNF441 18 43.0 Weakly correlated
47 ZNF506 17 28.9 Weakly correlated
48 ZNF528 17 43.0 Weakly correlated
49 ZFP28 16 99.0 Highly correlated
50 ZFP57 16 87.0 Moderately correlated
51 ZNF248 16 99.0 Highly correlated
52 ZNF28 15 28.9 Weakly correlated
53 ZNF490 14 43.0 Weakly correlated
54 ZNF735 14 28.9 Weakly correlated
55 ZNF264 12 99.0 Highly correlated
56 ZNF823 11 43.0 Weakly correlated
57 ZNF320 10 28.9 Weakly correlated
58 ZNF440 10 28.9 Weakly correlated
59 ZNF549 10 87.0 Moderately correlated
60 ZNF778 10 74.0 Weakly correlated
61 ZNF169 9 94.0 Moderately correlated
62 ZNF284 9 43.0 Weakly correlated
63 ZNF331 9 94.0 Moderately correlated
64 ZNF334 9 99.0 Highly correlated
65 ZNF583 9 99.0 Highly correlated
66 ZNF707 9 74.0 Weakly correlated
67 ZKSCAN5 8 160.0 Weakly correlated
68 ZNF641 8 99.0 Highly correlated
69 ZNF141 7 43.0 Weakly correlated
70 ZNF17 7 69.0 Weakly correlated
71 ZNF202 7 160.0 Weakly correlated
72 ZNF274 7 99.0 Highly correlated
73 ZNF41 7 99.0 Highly correlated
74 ZNF585A 7 99.0 Highly correlated
75 ZNF429 6 28.9 Weakly correlated
76 ZNF468 6 28.9 Weakly correlated
77 ZNF563 6 28.9 Weakly correlated
78 ZNF671 6 94.0 Moderately correlated
79 ZNF136 5 74.0 Weakly correlated
80 ZNF33A 5 99.0 Highly correlated
81 ZNF425 5 94.0 Moderately correlated
82 ZNF44 5 43.0 Weakly correlated
83 ZNF674 5 99.0 Highly correlated
84 ZNF682 5 28.9 Weakly correlated
85 ZNF695 5 28.9 Weakly correlated
86 ZNF792 5 94.0 Moderately correlated
87 ZNF157 4 99.0 Highly correlated
88 ZNF189 4 99.0 Highly correlated
89 ZNF211 4 94.0 Moderately correlated
90 ZNF224 4 69.0 Weakly correlated
91 ZNF282 4 319.0 Weakly correlated
92 ZNF347 4 43.0 Weakly correlated
93 ZNF418 4 43.0 Weakly correlated
94 ZNF471 4 94.0 Moderately correlated
95 ZNF519 4 19.6 Weakly correlated
96 ZNF677 4 99.0 Highly correlated
97 ZNF730 4 19.6 Weakly correlated
98 ZNF74 4 99.0 Highly correlated
99 ZNF808 4 19.6 Weakly correlated
100 ZFP90 3 99.0 Highly correlated
101 ZNF26 3 99.0 Highly correlated
102 ZNF273 3 28.9 Weakly correlated
103 ZNF287 3 99.0 Highly correlated
104 ZNF337 3 43.0 Weakly correlated
105 ZNF430 3 19.6 Weakly correlated
106 ZNF543 3 99.0 Highly correlated
107 ZNF573 3 94.0 Moderately correlated
108 ZNF675 3 8.6 Weakly correlated
109 ZNF684 3 99.0 Highly correlated
110 ZNF816 3 28.9 Weakly correlated
111 ZNF879 3 99.0 Highly correlated
112 ZKSCAN2 2 180.0 Weakly correlated
113 ZNF10 2 99.0 Highly correlated
114 ZNF124 2 43.0 Weakly correlated
115 ZNF222 2 43.0 Weakly correlated
116 ZNF250 2 99.0 Highly correlated
117 ZNF283 2 99.0 Highly correlated
118 ZNF304 2 99.0 Highly correlated
119 ZNF343 2 74.0 Weakly correlated
120 ZNF350 2 99.0 Highly correlated
121 ZNF354A 2 99.0 Highly correlated
122 ZNF354C 2 99.0 Highly correlated
123 ZNF383 2 99.0 Highly correlated
124 ZNF436 2 180.0 Weakly correlated
125 ZNF43 2 43.0 Weakly correlated
126 ZNF445 2 99.0 Highly correlated
127 ZNF530 2 28.9 Weakly correlated
128 ZNF567 2 99.0 Highly correlated
129 ZNF582 2 99.0 Highly correlated
130 ZNF586 2 43.0 Weakly correlated
131 ZNF605 2 99.0 Highly correlated
132 ZNF613 2 99.0 Highly correlated
133 ZNF667 2 99.0 Highly correlated
134 ZNF75A 2 94.0 Moderately correlated
135 ZNF77 2 87.0 Moderately correlated
136 ZNF786 2 99.0 Highly correlated
137 ZNF789 2 99.0 Highly correlated
138 ZNF85 2 28.9 Weakly correlated
139 ZNF93 2 8.6 Weakly correlated
140 RBAK 1 99.0 Highly correlated
141 ZFP14 1 99.0 Highly correlated
142 ZFP30 1 99.0 Highly correlated
143 ZIK1 1 87.0 Moderately correlated
144 ZKSCAN3 1 99.0 Highly correlated
145 ZNF100 1 28.9 Weakly correlated
146 ZNF114 1 28.9 Weakly correlated
147 ZNF12 1 99.0 Highly correlated
148 ZNF160 1 74.0 Weakly correlated
149 ZNF205 1 180.0 Weakly correlated
150 ZNF212 1 160.0 Weakly correlated
151 ZNF223 1 43.0 Weakly correlated
152 ZNF225 1 74.0 Weakly correlated
153 ZNF230 1 28.9 Weakly correlated
154 ZNF254 1 43.0 Weakly correlated
155 ZNF33B 1 99.0 Highly correlated
156 ZNF34 1 99.0 Highly correlated
157 ZNF398 1 99.0 Highly correlated
158 ZNF419 1 28.9 Weakly correlated
159 ZNF433 1 43.0 Weakly correlated
160 ZNF442 1 43.0 Weakly correlated
161 ZNF45 1 99.0 Highly correlated
162 ZNF480 1 43.0 Weakly correlated
163 ZNF483 1 99.0 Highly correlated
164 ZNF484 1 99.0 Highly correlated
165 ZNF510 1 99.0 Highly correlated
166 ZNF527 1 99.0 Highly correlated
167 ZNF548 1 94.0 Moderately correlated
168 ZNF552 1 28.9 Weakly correlated
169 ZNF555 1 94.0 Moderately correlated
170 ZNF557 1 15.2 Weakly correlated
171 ZNF559 1 74.0 Weakly correlated
172 ZNF561 1 43.0 Weakly correlated
173 ZNF564 1 74.0 Weakly correlated
174 ZNF565 1 99.0 Highly correlated
175 ZNF568 1 99.0 Highly correlated
176 ZNF569 1 99.0 Highly correlated
177 ZNF578 1 15.2 Weakly correlated
178 ZNF587 1 28.9 Weakly correlated
179 ZNF611 1 19.6 Weakly correlated
180 ZNF615 1 99.0 Highly correlated
181 ZNF626 1 0.0 Weakly correlated
182 ZNF69 1 28.9 Weakly correlated
183 ZNF700 1 28.9 Weakly correlated
184 ZNF705E 1 0.0 Weakly correlated
185 ZNF716 1 19.6 Weakly correlated
186 ZNF727 1 19.6 Weakly correlated
187 ZNF728 1 19.6 Weakly correlated
188 ZNF736 1 43.0 Weakly correlated
189 ZNF765 1 8.6 Weakly correlated
190 ZNF776 1 43.0 Weakly correlated
191 ZNF780A 1 43.0 Weakly correlated
192 ZNF791 1 87.0 Moderately correlated
193 ZNF799 1 43.0 Weakly correlated
194 ZNF813 1 28.9 Weakly correlated
195 ZNF845 1 28.9 Weakly correlated
196 ZNF846 1 74.0 Weakly correlated
197 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 71 94.0 Moderately correlated
2 ZFP69 63 99.0 Highly correlated
3 ZNF486 61 8.6 Weakly correlated
4 ZIM3 48 87.0 Moderately correlated
5 ZNF8 47 99.0 Highly correlated
6 ZNF101 34 43.0 Weakly correlated
7 ZNF723 33 15.2 Weakly correlated
8 ZNF382 31 99.0 Highly correlated
9 ZNF84 27 99.0 Highly correlated
10 ZNF534 22 19.6 Weakly correlated
11 ZNF680 17 28.9 Weakly correlated
12 ZNF766 15 43.0 Weakly correlated
13 ZNF263 14 180.0 Weakly correlated
14 ZNF479 13 6.4 Weakly correlated
15 ZNF558 12 99.0 Highly correlated
16 ZNF485 11 94.0 Moderately correlated
17 ZNF701 11 28.9 Weakly correlated
18 ZNF75D 10 94.0 Moderately correlated
19 ZNF133 9 99.0 Highly correlated
20 ZNF140 9 99.0 Highly correlated
21 ZNF317 9 99.0 Highly correlated
22 ZNF735 8 28.9 Weakly correlated
23 ZNF597 8 94.0 Moderately correlated
24 ZNF705B 8 28.9 Weakly correlated
25 ZNF264 7 99.0 Highly correlated
26 ZNF589 7 28.9 Weakly correlated
27 ZNF18 7 160.0 Weakly correlated
28 ZNF585B 7 99.0 Highly correlated
29 ZNF324 6 99.0 Highly correlated
30 ZNF793 6 99.0 Highly correlated
31 ZNF248 5 99.0 Highly correlated
32 ZNF705D 5 28.9 Weakly correlated
33 ZNF554 5 99.0 Highly correlated
34 ZNF92 5 28.9 Weakly correlated
35 ZFP57 4 87.0 Moderately correlated
36 ZNF677 4 99.0 Highly correlated
37 ZNF2 4 99.0 Highly correlated
38 ZNF257 4 0.0 Weakly correlated
39 ZFP28 3 99.0 Highly correlated
40 ZFP37 3 99.0 Highly correlated
41 ZKSCAN5 3 160.0 Weakly correlated
42 ZNF136 3 74.0 Weakly correlated
43 ZNF169 3 94.0 Moderately correlated
44 ZNF671 3 94.0 Moderately correlated
45 ZNF792 3 94.0 Moderately correlated
46 ZNF44 3 43.0 Weakly correlated
47 ZNF197 3 99.0 Highly correlated
48 ZNF584 3 99.0 Highly correlated
49 ZNF471 3 94.0 Moderately correlated
50 ZNF695 3 28.9 Weakly correlated
51 ZNF468 3 28.9 Weakly correlated
52 ZNF202 3 160.0 Weakly correlated
53 ZNF394 3 99.0 Highly correlated
54 ZFP69B 2 99.0 Highly correlated
55 ZFP90 2 99.0 Highly correlated
56 ZKSCAN1 2 160.0 Weakly correlated
57 ZNF10 2 99.0 Highly correlated
58 ZNF567 2 99.0 Highly correlated
59 ZNF610 2 28.9 Weakly correlated
60 ZNF175 2 94.0 Moderately correlated
61 ZNF320 2 28.9 Weakly correlated
62 ZNF74 2 99.0 Highly correlated
63 ZNF429 2 28.9 Weakly correlated
64 ZNF528 2 43.0 Weakly correlated
65 ZNF789 2 99.0 Highly correlated
66 ZNF823 2 43.0 Weakly correlated
67 ZNF440 2 28.9 Weakly correlated
68 ZNF282 2 319.0 Weakly correlated
69 ZNF674 2 99.0 Highly correlated
70 ZNF354C 1 99.0 Highly correlated
71 ZNF433 1 43.0 Weakly correlated
72 ZNF675 1 8.6 Weakly correlated
73 ZNF684 1 99.0 Highly correlated
74 ZKSCAN8 1 160.0 Weakly correlated
75 ZNF331 1 94.0 Moderately correlated
76 ZNF33A 1 99.0 Highly correlated
77 ZNF543 1 99.0 Highly correlated
78 ZNF786 1 99.0 Highly correlated
79 ZNF273 1 28.9 Weakly correlated
80 ZNF347 1 43.0 Weakly correlated
81 ZNF350 1 99.0 Highly correlated
82 ZNF43 1 43.0 Weakly correlated
83 RBAK 1 99.0 Highly correlated
84 ZNF124 1 43.0 Weakly correlated
85 ZNF816 1 28.9 Weakly correlated
86 ZNF189 1 99.0 Highly correlated
87 ZNF283 1 99.0 Highly correlated
88 ZNF28 1 28.9 Weakly correlated
89 ZNF41 1 99.0 Highly correlated
90 ZNF679 1 28.9 Weakly correlated
91 ZNF211 1 94.0 Moderately correlated
92 ZNF287 1 99.0 Highly correlated
93 ZNF337 1 43.0 Weakly correlated
94 ZNF490 1 43.0 Weakly correlated
95 ZNF585A 1 99.0 Highly correlated
96 ZNF730 1 19.6 Weakly correlated
97 ZNF641 1 99.0 Highly correlated
98 ZNF250 1 99.0 Highly correlated
99 ZNF480 1 43.0 Weakly correlated
100 ZNF682 1 28.9 Weakly correlated
101 ZNF879 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF251 94.0 Moderately correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF486 8.6 Weakly correlated
5 ZNF701 28.9 Weakly correlated
6 ZNF84 99.0 Highly correlated