ZRdb KZFP & Repeats
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LINE_L1ME4A_3END

  • Name
    L1ME4A_3END
  • Repbase
    L1ME4A
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000303
Description :

ORF2 ends at bp 678
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccttaatatataaagagctcttacaaatcaataagaaaaagacgaacaccccaatagaaaaatgggcaaaggacatgaacagacaattcacaaaagaagaaatacaaatggccaataaacatatgaaaanatgttcaacctcactagtaatcaaagaaatgcaaattaaaacaacaatgagataccatttttcacctatcaaattggcaaagatttaaaagattgataatacccagtgttggcgagggtgtggngaaacgggcactctcatacactgctggtgggagtgtaaattggtacaacctttctggagggcaatttggcaatatgtatcaaaagccttaaaaatgtncataccctttgacccagtaattccacttctaggaatttatcctaaggaaataatcagagatgtgnacaaagatttatgtacaaggatgttcatcgcagcattatttataatagcgaaaaattggaaacaacctaaatgtccaacaataggggantggttaaataaattatggtacatccatanaatggaatattatgcagccattaaaaatnatgttttcgaagaatatttaatgacatgggaaaatgctcatgatataatgttaagtgaaaaaagcaggntacaaaactgtatatacagtatgatcccaattttgttanaaaatanatatataaatgtatacatatatgcatagaaaaaagactggaaggaaatacaccaaaatgttaacagtggttatctctgggtggtgggattatgggtgatttttattttcttttttctttgtattttctgtattttccaaattttctacaatgagcatgtattacttttataatcagaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 757 99.0 Highly correlated
2 ZNF394 322 99.0 Highly correlated
3 ZNF766 190 43.0 Weakly correlated
4 ZIM3 165 87.0 Moderately correlated
5 ZNF317 152 99.0 Highly correlated
6 ZFP37 151 99.0 Highly correlated
7 ZNF2 138 99.0 Highly correlated
8 ZNF263 123 180.0 Weakly correlated
9 ZNF251 115 94.0 Moderately correlated
10 ZNF101 114 43.0 Weakly correlated
11 ZNF18 106 160.0 Weakly correlated
12 ZNF705B 91 28.9 Weakly correlated
13 ZNF589 87 28.9 Weakly correlated
14 ZFP69B 76 99.0 Highly correlated
15 ZNF175 76 94.0 Moderately correlated
16 ZNF680 75 28.9 Weakly correlated
17 ZNF558 72 99.0 Highly correlated
18 ZNF723 71 15.2 Weakly correlated
19 ZFP28 65 99.0 Highly correlated
20 ZNF705D 64 28.9 Weakly correlated
21 ZKSCAN8 61 160.0 Weakly correlated
22 ZNF679 61 28.9 Weakly correlated
23 ZNF324 59 99.0 Highly correlated
24 ZNF197 56 99.0 Highly correlated
25 ZKSCAN1 51 160.0 Weakly correlated
26 ZNF92 50 28.9 Weakly correlated
27 ZNF140 45 99.0 Highly correlated
28 ZNF534 44 19.6 Weakly correlated
29 ZNF584 43 99.0 Highly correlated
30 ZNF554 36 99.0 Highly correlated
31 ZNF610 34 28.9 Weakly correlated
32 ZNF479 33 6.4 Weakly correlated
33 ZNF486 32 8.6 Weakly correlated
34 ZNF75D 31 94.0 Moderately correlated
35 ZNF84 31 99.0 Highly correlated
36 ZNF133 30 99.0 Highly correlated
37 ZNF793 28 99.0 Highly correlated
38 ZNF597 26 94.0 Moderately correlated
39 ZNF8 26 99.0 Highly correlated
40 ZNF701 25 28.9 Weakly correlated
41 ZNF182 23 99.0 Highly correlated
42 ZNF485 23 94.0 Moderately correlated
43 ZFP69 22 99.0 Highly correlated
44 ZNF248 22 99.0 Highly correlated
45 ZNF441 22 43.0 Weakly correlated
46 ZNF735 21 28.9 Weakly correlated
47 ZNF74 19 99.0 Highly correlated
48 ZNF257 16 0.0 Weakly correlated
49 ZNF506 16 28.9 Weakly correlated
50 ZNF528 16 43.0 Weakly correlated
51 ZNF585B 16 99.0 Highly correlated
52 ZNF274 15 99.0 Highly correlated
53 ZNF320 15 28.9 Weakly correlated
54 ZNF490 15 43.0 Weakly correlated
55 ZNF264 14 99.0 Highly correlated
56 ZNF28 14 28.9 Weakly correlated
57 ZNF471 14 94.0 Moderately correlated
58 ZNF641 13 99.0 Highly correlated
59 ZFP57 12 87.0 Moderately correlated
60 ZNF136 12 74.0 Weakly correlated
61 ZNF202 12 160.0 Weakly correlated
62 ZNF585A 12 99.0 Highly correlated
63 ZNF792 12 94.0 Moderately correlated
64 ZNF823 11 43.0 Weakly correlated
65 ZNF331 10 94.0 Moderately correlated
66 ZNF549 10 87.0 Moderately correlated
67 ZFP30 9 99.0 Highly correlated
68 ZNF429 9 28.9 Weakly correlated
69 ZNF695 9 28.9 Weakly correlated
70 ZNF169 8 94.0 Moderately correlated
71 ZNF26 8 99.0 Highly correlated
72 ZNF425 8 94.0 Moderately correlated
73 ZNF547 8 74.0 Weakly correlated
74 ZNF583 8 99.0 Highly correlated
75 ZNF284 7 43.0 Weakly correlated
76 ZNF778 7 74.0 Weakly correlated
77 ZNF85 7 28.9 Weakly correlated
78 ZFP82 6 99.0 Highly correlated
79 ZNF224 6 69.0 Weakly correlated
80 ZNF519 6 19.6 Weakly correlated
81 ZNF567 6 99.0 Highly correlated
82 ZNF707 6 74.0 Weakly correlated
83 ZKSCAN5 5 160.0 Weakly correlated
84 ZNF10 5 99.0 Highly correlated
85 ZNF141 5 43.0 Weakly correlated
86 ZNF160 5 74.0 Weakly correlated
87 ZNF41 5 99.0 Highly correlated
88 ZNF440 5 28.9 Weakly correlated
89 ZNF563 5 28.9 Weakly correlated
90 ZNF677 5 99.0 Highly correlated
91 ZNF716 5 19.6 Weakly correlated
92 ZNF786 5 99.0 Highly correlated
93 ZNF273 4 28.9 Weakly correlated
94 ZNF287 4 99.0 Highly correlated
95 ZNF436 4 180.0 Weakly correlated
96 ZNF468 4 28.9 Weakly correlated
97 ZNF780A 4 43.0 Weakly correlated
98 ZNF878 4 43.0 Weakly correlated
99 ZNF879 4 99.0 Highly correlated
100 ZNF189 3 99.0 Highly correlated
101 ZNF214 3 99.0 Highly correlated
102 ZNF222 3 43.0 Weakly correlated
103 ZNF282 3 319.0 Weakly correlated
104 ZNF460 3 74.0 Weakly correlated
105 ZNF560 3 43.0 Weakly correlated
106 ZNF682 3 28.9 Weakly correlated
107 ZNF730 3 19.6 Weakly correlated
108 ZNF736 3 43.0 Weakly correlated
109 ZNF91 3 6.0 Weakly correlated
110 ZNF135 2 94.0 Moderately correlated
111 ZNF304 2 99.0 Highly correlated
112 ZNF30 2 94.0 Moderately correlated
113 ZNF337 2 43.0 Weakly correlated
114 ZNF33A 2 99.0 Highly correlated
115 ZNF354A 2 99.0 Highly correlated
116 ZNF418 2 43.0 Weakly correlated
117 ZNF44 2 43.0 Weakly correlated
118 ZNF454 2 99.0 Highly correlated
119 ZNF510 2 99.0 Highly correlated
120 ZNF568 2 99.0 Highly correlated
121 ZNF573 2 94.0 Moderately correlated
122 ZNF586 2 43.0 Weakly correlated
123 ZNF674 2 99.0 Highly correlated
124 ZNF675 2 8.6 Weakly correlated
125 ZNF700 2 28.9 Weakly correlated
126 ZNF727 2 19.6 Weakly correlated
127 ZNF75A 2 94.0 Moderately correlated
128 ZNF799 2 43.0 Weakly correlated
129 ZNF93 2 8.6 Weakly correlated
130 PRDM9 1 0.0 Weakly correlated
131 ZFP90 1 99.0 Highly correlated
132 ZIK1 1 87.0 Moderately correlated
133 ZKSCAN2 1 180.0 Weakly correlated
134 ZNF12 1 99.0 Highly correlated
135 ZNF157 1 99.0 Highly correlated
136 ZNF17 1 69.0 Weakly correlated
137 ZNF184 1 99.0 Highly correlated
138 ZNF211 1 94.0 Moderately correlated
139 ZNF212 1 160.0 Weakly correlated
140 ZNF250 1 99.0 Highly correlated
141 ZNF283 1 99.0 Highly correlated
142 ZNF333 1 99.0 Highly correlated
143 ZNF334 1 99.0 Highly correlated
144 ZNF347 1 43.0 Weakly correlated
145 ZNF354C 1 99.0 Highly correlated
146 ZNF417 1 28.9 Weakly correlated
147 ZNF431 1 28.9 Weakly correlated
148 ZNF432 1 99.0 Highly correlated
149 ZNF433 1 43.0 Weakly correlated
150 ZNF43 1 43.0 Weakly correlated
151 ZNF525 1 19.6 Weakly correlated
152 ZNF527 1 99.0 Highly correlated
153 ZNF529 1 99.0 Highly correlated
154 ZNF555 1 94.0 Moderately correlated
155 ZNF559 1 74.0 Weakly correlated
156 ZNF562 1 28.9 Weakly correlated
157 ZNF596 1 94.0 Moderately correlated
158 ZNF607 1 43.0 Weakly correlated
159 ZNF616 1 43.0 Weakly correlated
160 ZNF630 1 94.0 Moderately correlated
161 ZNF649 1 28.9 Weakly correlated
162 ZNF667 1 99.0 Highly correlated
163 ZNF671 1 94.0 Moderately correlated
164 ZNF684 1 99.0 Highly correlated
165 ZNF689 1 99.0 Highly correlated
166 ZNF764 1 160.0 Weakly correlated
167 ZNF77 1 87.0 Moderately correlated
168 ZNF808 1 19.6 Weakly correlated
169 ZNF813 1 28.9 Weakly correlated
170 ZNF816 1 28.9 Weakly correlated
171 ZNF845 1 28.9 Weakly correlated
172 ZNF850 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 55 94.0 Moderately correlated
2 ZIM3 54 87.0 Moderately correlated
3 ZNF101 52 43.0 Weakly correlated
4 ZNF382 32 99.0 Highly correlated
5 ZNF723 28 15.2 Weakly correlated
6 ZNF317 22 99.0 Highly correlated
7 ZNF84 22 99.0 Highly correlated
8 ZNF74 18 99.0 Highly correlated
9 ZNF133 18 99.0 Highly correlated
10 ZFP69 17 99.0 Highly correlated
11 ZNF8 17 99.0 Highly correlated
12 ZNF486 17 8.6 Weakly correlated
13 ZNF680 16 28.9 Weakly correlated
14 ZNF766 16 43.0 Weakly correlated
15 ZNF140 15 99.0 Highly correlated
16 ZNF75D 14 94.0 Moderately correlated
17 ZNF485 13 94.0 Moderately correlated
18 ZNF735 12 28.9 Weakly correlated
19 ZFP28 12 99.0 Highly correlated
20 ZNF534 10 19.6 Weakly correlated
21 ZNF479 8 6.4 Weakly correlated
22 ZNF641 8 99.0 Highly correlated
23 ZNF263 8 180.0 Weakly correlated
24 ZNF558 7 99.0 Highly correlated
25 ZNF92 7 28.9 Weakly correlated
26 ZNF136 6 74.0 Weakly correlated
27 ZNF585A 6 99.0 Highly correlated
28 ZNF567 6 99.0 Highly correlated
29 ZKSCAN8 6 160.0 Weakly correlated
30 ZNF248 6 99.0 Highly correlated
31 ZNF701 6 28.9 Weakly correlated
32 ZNF264 6 99.0 Highly correlated
33 ZNF705D 6 28.9 Weakly correlated
34 ZNF793 6 99.0 Highly correlated
35 ZNF705B 5 28.9 Weakly correlated
36 ZNF324 5 99.0 Highly correlated
37 ZNF394 5 99.0 Highly correlated
38 ZFP82 5 99.0 Highly correlated
39 ZNF160 5 74.0 Weakly correlated
40 ZNF823 4 43.0 Weakly correlated
41 ZNF589 4 28.9 Weakly correlated
42 ZNF10 4 99.0 Highly correlated
43 ZNF175 4 94.0 Moderately correlated
44 ZNF202 4 160.0 Weakly correlated
45 ZNF18 4 160.0 Weakly correlated
46 ZNF440 4 28.9 Weakly correlated
47 ZNF468 3 28.9 Weakly correlated
48 ZNF597 3 94.0 Moderately correlated
49 ZNF554 3 99.0 Highly correlated
50 ZNF2 3 99.0 Highly correlated
51 ZNF287 3 99.0 Highly correlated
52 ZNF26 3 99.0 Highly correlated
53 ZNF716 3 19.6 Weakly correlated
54 ZFP57 2 87.0 Moderately correlated
55 ZNF792 2 94.0 Moderately correlated
56 ZNF197 2 99.0 Highly correlated
57 ZNF695 2 28.9 Weakly correlated
58 ZFP37 2 99.0 Highly correlated
59 ZNF141 2 43.0 Weakly correlated
60 ZNF677 2 99.0 Highly correlated
61 ZNF471 2 94.0 Moderately correlated
62 ZNF257 2 0.0 Weakly correlated
63 ZNF585B 2 99.0 Highly correlated
64 ZNF584 2 99.0 Highly correlated
65 ZNF429 2 28.9 Weakly correlated
66 ZNF506 1 28.9 Weakly correlated
67 ZNF85 1 28.9 Weakly correlated
68 ZNF30 1 94.0 Moderately correlated
69 ZNF250 1 99.0 Highly correlated
70 ZNF28 1 28.9 Weakly correlated
71 ZNF337 1 43.0 Weakly correlated
72 ZNF525 1 19.6 Weakly correlated
73 ZNF549 1 87.0 Moderately correlated
74 ZNF674 1 99.0 Highly correlated
75 ZNF679 1 28.9 Weakly correlated
76 ZNF490 1 43.0 Weakly correlated
77 ZNF808 1 19.6 Weakly correlated
78 ZNF273 1 28.9 Weakly correlated
79 ZFP90 1 99.0 Highly correlated
80 ZKSCAN5 1 160.0 Weakly correlated
81 ZNF425 1 94.0 Moderately correlated
82 ZNF610 1 28.9 Weakly correlated
83 ZNF667 1 99.0 Highly correlated
84 ZNF675 1 8.6 Weakly correlated
85 ZNF684 1 99.0 Highly correlated
86 ZNF41 1 99.0 Highly correlated
87 ZNF44 1 43.0 Weakly correlated
88 ZNF189 1 99.0 Highly correlated
89 ZNF560 1 43.0 Weakly correlated
90 ZNF528 1 43.0 Weakly correlated
91 ZNF75A 1 94.0 Moderately correlated
92 ZNF879 1 99.0 Highly correlated
93 ZNF182 1 99.0 Highly correlated
94 ZNF33A 1 99.0 Highly correlated
95 ZNF417 1 28.9 Weakly correlated
96 ZNF432 1 99.0 Highly correlated
97 ZNF583 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF248 99.0 Highly correlated
3 ZNF251 94.0 Moderately correlated
4 ZNF264 99.0 Highly correlated
5 ZNF486 8.6 Weakly correlated
6 ZNF641 99.0 Highly correlated
7 ZNF680 28.9 Weakly correlated
8 ZNF701 28.9 Weakly correlated
9 ZNF75D 94.0 Moderately correlated
10 ZNF793 99.0 Highly correlated
11 ZNF84 99.0 Highly correlated
12 ZNF92 28.9 Weakly correlated