ZRdb KZFP & Repeats
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LINE_L1ME3_3END

  • Name
    L1ME3_3END
  • Repbase
    L1ME3
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000296
Description :

ORF2 ends at bp 675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctcgtatccagaatatataaagaactcctacaaatcaataagaaaaagacaaacaacccaattaaaaaatgggcaaaagacttgaacaggcacttcacaaaagaggatatccaaatggccaataagcatatgaaaaggtgctcaacatcattagtcatcagggaaatgcaaattaaaaccacaatgagataccactacacacccaccagaatggctaaaattaaaaagactgacaataccaagtgttggcgaggatgtggagcaactggaactctcatacattgctggtgggagtgtaaattggtacaaccactttggaaaactgtttggcagtatctactaaagctaaacatacgcctaccctatgacccagcaattccactcctaggtatatacccaagagaaatgagtgcatatgtccaccaaaagacatgtacaagaatgttcatagcagctttattcataatagccnaaaactggaaacaacccaaatgtccatcaacagnagaatggataaataaattgtggtatattcatacaatggaatactacacagcaataaaaaagaacgaactactgntacacgcaacaacatggatgaatctcacagacatnatgttgagcgaaagaagccagacacaaaagagtacatactgtatgattccatttatatgaagttcaagaacaggcaaaactaatctatggtgatagaagtcagaatagtggttacctttggggaggggtattgactgggaaggggcacgagggagccttctggggtgctggaaatgttctatatcttgatctgggtggtggttacacgggtgtatacatatgtaaaaattcatcgagctgtacacttaagatttgtgcactttactgtatgtaagttatacctcaattaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 465 99.0 Highly correlated
2 ZNF317 177 99.0 Highly correlated
3 ZIM3 100 87.0 Moderately correlated
4 ZNF486 99 8.6 Weakly correlated
5 ZNF394 96 99.0 Highly correlated
6 ZNF766 88 43.0 Weakly correlated
7 ZNF263 81 180.0 Weakly correlated
8 ZNF680 66 28.9 Weakly correlated
9 ZNF18 56 160.0 Weakly correlated
10 ZNF92 55 28.9 Weakly correlated
11 ZNF140 54 99.0 Highly correlated
12 ZNF679 50 28.9 Weakly correlated
13 ZNF251 44 94.0 Moderately correlated
14 ZNF723 44 15.2 Weakly correlated
15 ZNF558 40 99.0 Highly correlated
16 ZNF84 39 99.0 Highly correlated
17 ZFP37 38 99.0 Highly correlated
18 ZNF2 37 99.0 Highly correlated
19 ZNF81 36 99.0 Highly correlated
20 ZNF705B 33 28.9 Weakly correlated
21 ZNF8 33 99.0 Highly correlated
22 ZKSCAN1 31 160.0 Weakly correlated
23 ZNF589 31 28.9 Weakly correlated
24 ZNF101 28 43.0 Weakly correlated
25 ZNF479 28 6.4 Weakly correlated
26 ZFP69B 26 99.0 Highly correlated
27 ZNF133 25 99.0 Highly correlated
28 ZNF534 25 19.6 Weakly correlated
29 ZNF610 25 28.9 Weakly correlated
30 ZNF701 25 28.9 Weakly correlated
31 ZNF705D 24 28.9 Weakly correlated
32 ZNF248 22 99.0 Highly correlated
33 ZNF554 21 99.0 Highly correlated
34 ZFP28 20 99.0 Highly correlated
35 ZNF324 20 99.0 Highly correlated
36 ZNF175 19 94.0 Moderately correlated
37 ZKSCAN8 18 160.0 Weakly correlated
38 ZNF567 17 99.0 Highly correlated
39 ZNF10 16 99.0 Highly correlated
40 ZNF197 16 99.0 Highly correlated
41 ZNF136 15 74.0 Weakly correlated
42 ZNF793 15 99.0 Highly correlated
43 ZNF584 13 99.0 Highly correlated
44 ZNF182 12 99.0 Highly correlated
45 ZNF26 12 99.0 Highly correlated
46 ZNF257 11 0.0 Weakly correlated
47 ZNF547 11 74.0 Weakly correlated
48 ZNF585A 10 99.0 Highly correlated
49 ZNF597 10 94.0 Moderately correlated
50 ZFP57 9 87.0 Moderately correlated
51 ZNF485 9 94.0 Moderately correlated
52 ZNF528 9 43.0 Weakly correlated
53 ZNF75D 9 94.0 Moderately correlated
54 ZFP14 8 99.0 Highly correlated
55 ZFP30 8 99.0 Highly correlated
56 ZNF264 7 99.0 Highly correlated
57 ZNF274 7 99.0 Highly correlated
58 ZNF490 7 43.0 Weakly correlated
59 ZNF585B 7 99.0 Highly correlated
60 ZNF735 7 28.9 Weakly correlated
61 ZFP69 6 99.0 Highly correlated
62 ZNF169 6 94.0 Moderately correlated
63 ZNF202 6 160.0 Weakly correlated
64 ZNF331 6 94.0 Moderately correlated
65 ZNF354A 6 99.0 Highly correlated
66 ZNF429 6 28.9 Weakly correlated
67 ZNF441 6 43.0 Weakly correlated
68 ZNF506 6 28.9 Weakly correlated
69 ZNF695 6 28.9 Weakly correlated
70 ZNF823 6 43.0 Weakly correlated
71 ZNF425 5 94.0 Moderately correlated
72 ZNF682 5 28.9 Weakly correlated
73 ZNF778 5 74.0 Weakly correlated
74 ZNF792 5 94.0 Moderately correlated
75 ZNF160 4 74.0 Weakly correlated
76 ZNF284 4 43.0 Weakly correlated
77 ZNF28 4 28.9 Weakly correlated
78 ZNF7 4 99.0 Highly correlated
79 ZFP82 3 99.0 Highly correlated
80 ZNF135 3 94.0 Moderately correlated
81 ZNF320 3 28.9 Weakly correlated
82 ZNF41 3 99.0 Highly correlated
83 ZNF44 3 43.0 Weakly correlated
84 ZNF573 3 94.0 Moderately correlated
85 ZNF586 3 43.0 Weakly correlated
86 ZNF671 3 94.0 Moderately correlated
87 ZNF677 3 99.0 Highly correlated
88 ZNF786 3 99.0 Highly correlated
89 ZNF879 3 99.0 Highly correlated
90 ZNF124 2 43.0 Weakly correlated
91 ZNF157 2 99.0 Highly correlated
92 ZNF224 2 69.0 Weakly correlated
93 ZNF287 2 99.0 Highly correlated
94 ZNF334 2 99.0 Highly correlated
95 ZNF33A 2 99.0 Highly correlated
96 ZNF432 2 99.0 Highly correlated
97 ZNF433 2 43.0 Weakly correlated
98 ZNF436 2 180.0 Weakly correlated
99 ZNF440 2 28.9 Weakly correlated
100 ZNF468 2 28.9 Weakly correlated
101 ZNF483 2 99.0 Highly correlated
102 ZNF510 2 99.0 Highly correlated
103 ZNF519 2 19.6 Weakly correlated
104 ZNF707 2 74.0 Weakly correlated
105 ZNF716 2 19.6 Weakly correlated
106 ZNF75A 2 94.0 Moderately correlated
107 ZNF765 2 8.6 Weakly correlated
108 ZNF780A 2 43.0 Weakly correlated
109 ZNF808 2 19.6 Weakly correlated
110 ZNF85 2 28.9 Weakly correlated
111 ZNF93 2 8.6 Weakly correlated
112 ZIK1 1 87.0 Moderately correlated
113 ZKSCAN5 1 160.0 Weakly correlated
114 ZNF141 1 43.0 Weakly correlated
115 ZNF154 1 94.0 Moderately correlated
116 ZNF184 1 99.0 Highly correlated
117 ZNF189 1 99.0 Highly correlated
118 ZNF214 1 99.0 Highly correlated
119 ZNF283 1 99.0 Highly correlated
120 ZNF30 1 94.0 Moderately correlated
121 ZNF333 1 99.0 Highly correlated
122 ZNF343 1 74.0 Weakly correlated
123 ZNF347 1 43.0 Weakly correlated
124 ZNF350 1 99.0 Highly correlated
125 ZNF354B 1 99.0 Highly correlated
126 ZNF418 1 43.0 Weakly correlated
127 ZNF460 1 74.0 Weakly correlated
128 ZNF471 1 94.0 Moderately correlated
129 ZNF549 1 87.0 Moderately correlated
130 ZNF550 1 94.0 Moderately correlated
131 ZNF555 1 94.0 Moderately correlated
132 ZNF569 1 99.0 Highly correlated
133 ZNF583 1 99.0 Highly correlated
134 ZNF611 1 19.6 Weakly correlated
135 ZNF641 1 99.0 Highly correlated
136 ZNF675 1 8.6 Weakly correlated
137 ZNF684 1 99.0 Highly correlated
138 ZNF700 1 28.9 Weakly correlated
139 ZNF705E 1 0.0 Weakly correlated
140 ZNF736 1 43.0 Weakly correlated
141 ZNF789 1 99.0 Highly correlated
142 ZNF816 1 28.9 Weakly correlated
143 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 51 99.0 Highly correlated
2 ZIM3 51 87.0 Moderately correlated
3 ZNF317 35 99.0 Highly correlated
4 ZNF84 34 99.0 Highly correlated
5 ZNF81 33 99.0 Highly correlated
6 ZNF251 29 94.0 Moderately correlated
7 ZNF723 25 15.2 Weakly correlated
8 ZNF8 20 99.0 Highly correlated
9 ZNF92 20 28.9 Weakly correlated
10 ZNF248 19 99.0 Highly correlated
11 ZNF263 17 180.0 Weakly correlated
12 ZNF680 16 28.9 Weakly correlated
13 ZNF486 16 8.6 Weakly correlated
14 ZNF479 15 6.4 Weakly correlated
15 ZNF10 15 99.0 Highly correlated
16 ZNF101 15 43.0 Weakly correlated
17 ZNF136 14 74.0 Weakly correlated
18 ZNF133 12 99.0 Highly correlated
19 ZNF534 12 19.6 Weakly correlated
20 ZNF567 12 99.0 Highly correlated
21 ZNF140 11 99.0 Highly correlated
22 ZNF701 10 28.9 Weakly correlated
23 ZNF793 9 99.0 Highly correlated
24 ZNF26 9 99.0 Highly correlated
25 ZNF558 8 99.0 Highly correlated
26 ZFP28 8 99.0 Highly correlated
27 ZFP14 8 99.0 Highly correlated
28 ZNF585A 6 99.0 Highly correlated
29 ZNF18 6 160.0 Weakly correlated
30 ZFP69 6 99.0 Highly correlated
31 ZNF485 5 94.0 Moderately correlated
32 ZFP57 5 87.0 Moderately correlated
33 ZNF735 5 28.9 Weakly correlated
34 ZNF766 5 43.0 Weakly correlated
35 ZNF7 4 99.0 Highly correlated
36 ZNF705B 4 28.9 Weakly correlated
37 ZNF705D 4 28.9 Weakly correlated
38 ZKSCAN1 4 160.0 Weakly correlated
39 ZNF695 3 28.9 Weakly correlated
40 ZNF257 3 0.0 Weakly correlated
41 ZNF264 3 99.0 Highly correlated
42 ZNF677 3 99.0 Highly correlated
43 ZNF75D 3 94.0 Moderately correlated
44 ZNF679 3 28.9 Weakly correlated
45 ZNF354A 3 99.0 Highly correlated
46 ZFP82 3 99.0 Highly correlated
47 ZNF429 3 28.9 Weakly correlated
48 ZNF44 2 43.0 Weakly correlated
49 ZNF2 2 99.0 Highly correlated
50 ZNF202 2 160.0 Weakly correlated
51 ZNF707 2 74.0 Weakly correlated
52 ZNF468 2 28.9 Weakly correlated
53 ZNF610 2 28.9 Weakly correlated
54 ZNF780A 2 43.0 Weakly correlated
55 ZNF792 2 94.0 Moderately correlated
56 ZNF589 1 28.9 Weakly correlated
57 ZNF425 1 94.0 Moderately correlated
58 ZNF554 1 99.0 Highly correlated
59 ZNF550 1 94.0 Moderately correlated
60 ZNF274 1 99.0 Highly correlated
61 ZNF816 1 28.9 Weakly correlated
62 ZFP37 1 99.0 Highly correlated
63 ZNF716 1 19.6 Weakly correlated
64 ZNF175 1 94.0 Moderately correlated
65 ZNF584 1 99.0 Highly correlated
66 ZNF440 1 28.9 Weakly correlated
67 ZNF490 1 43.0 Weakly correlated
68 ZNF287 1 99.0 Highly correlated
69 ZNF354B 1 99.0 Highly correlated
70 ZNF585B 1 99.0 Highly correlated
71 ZNF597 1 94.0 Moderately correlated
72 ZNF350 1 99.0 Highly correlated
73 ZNF197 1 99.0 Highly correlated
74 ZNF324 1 99.0 Highly correlated
75 ZNF394 1 99.0 Highly correlated
76 ZNF671 1 94.0 Moderately correlated
77 ZNF184 1 99.0 Highly correlated
78 ZNF160 1 74.0 Weakly correlated
79 ZNF528 1 43.0 Weakly correlated
80 ZNF441 1 43.0 Weakly correlated
81 ZNF684 1 99.0 Highly correlated
82 ZNF33A 1 99.0 Highly correlated
83 ZNF169 1 94.0 Moderately correlated
84 ZNF154 1 94.0 Moderately correlated
85 ZNF433 1 43.0 Weakly correlated
86 ZNF471 1 94.0 Moderately correlated
87 ZKSCAN5 1 160.0 Weakly correlated
88 ZIK1 1 87.0 Moderately correlated
89 ZNF41 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP14 99.0 Highly correlated
2 ZNF18 160.0 Weakly correlated
3 ZNF251 94.0 Moderately correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF317 99.0 Highly correlated
6 ZNF479 6.4 Weakly correlated
7 ZNF486 8.6 Weakly correlated
8 ZNF567 99.0 Highly correlated
9 ZNF680 28.9 Weakly correlated
10 ZNF701 28.9 Weakly correlated
11 ZNF723 15.2 Weakly correlated
12 ZNF793 99.0 Highly correlated
13 ZNF84 99.0 Highly correlated
14 ZNF92 28.9 Weakly correlated