ZRdb KZFP & Repeats
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LINE_L1ME3G_3END

  • Name
    L1ME3G_3END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000302
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaatatccagaatatataaagaactcctacaaatcaataagaaaaagacaacccaatagaaaaatgggcaaaggatatgaacaggcaattcacagaagaggaaatacaaatggccaataaacatatgaaaagatgctcaacctcactagtaatcagggaaatgcaaattaaaacaacaatgagataccatttttcacccatcagattggcaaaaatttaaaagnttgataatatcnagtgttggcgagggtgtggggaaacgggtactctcatacactgctggtgggagtgtaaattggtacagccnttttggagggcaatttggcagtatctattaaaatttaaaatgcgcataccctttgacccagcaattccacttctnggnatctatcctanagaaatactcgcacatgtgcacaaggangcatgtacaaggatgttcattgcagcattgtttgtaatagcgaaaaattggaaacaacctaaatgtccatcaataggggaatggttaaataaattatggtatatccatactatggaatactatgcagcngttaaaaagaatgaggtagatctatatgtactgacatggaaagatctccaagacatattgttgagtgaaaaaagcaagttgcagaacgatacgtacagtatgatnccatttatgtaaaaaaacatacgcacaaacaanactatatgtttctatgtgtacgtgtgcgtatgtgtatgtaaatgcatagaaaaaggtctggaaggatacacaccaaactgataacagtggttacctctggggaggggaaggggactgaggattgggggggtggtggtcaaaggggactttagctttatctgtaatgttttaattttttacaaggagaatgtattcatgtattacttgtgtaattaaaaattaatttttaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 381 99.0 Highly correlated
2 ZNF394 172 99.0 Highly correlated
3 ZNF766 112 43.0 Weakly correlated
4 ZNF263 102 180.0 Weakly correlated
5 ZNF317 90 99.0 Highly correlated
6 ZNF2 84 99.0 Highly correlated
7 ZIM3 83 87.0 Moderately correlated
8 ZNF84 81 99.0 Highly correlated
9 ZNF18 77 160.0 Weakly correlated
10 ZFP37 76 99.0 Highly correlated
11 ZNF92 76 28.9 Weakly correlated
12 ZNF101 71 43.0 Weakly correlated
13 ZNF175 69 94.0 Moderately correlated
14 ZNF558 65 99.0 Highly correlated
15 ZNF723 58 15.2 Weakly correlated
16 ZNF251 57 94.0 Moderately correlated
17 ZFP69B 52 99.0 Highly correlated
18 ZKSCAN1 51 160.0 Weakly correlated
19 ZNF589 51 28.9 Weakly correlated
20 ZNF680 49 28.9 Weakly correlated
21 ZNF679 46 28.9 Weakly correlated
22 ZNF324 45 99.0 Highly correlated
23 ZNF486 43 8.6 Weakly correlated
24 ZNF197 40 99.0 Highly correlated
25 ZKSCAN8 39 160.0 Weakly correlated
26 ZNF705B 36 28.9 Weakly correlated
27 ZNF610 33 28.9 Weakly correlated
28 ZNF528 32 43.0 Weakly correlated
29 ZNF584 31 99.0 Highly correlated
30 ZNF701 30 28.9 Weakly correlated
31 ZNF534 28 19.6 Weakly correlated
32 ZNF554 25 99.0 Highly correlated
33 ZNF140 24 99.0 Highly correlated
34 ZNF8 24 99.0 Highly correlated
35 ZNF705D 23 28.9 Weakly correlated
36 ZNF75D 22 94.0 Moderately correlated
37 ZNF182 21 99.0 Highly correlated
38 ZNF793 21 99.0 Highly correlated
39 ZNF257 20 0.0 Weakly correlated
40 ZNF597 20 94.0 Moderately correlated
41 ZNF479 17 6.4 Weakly correlated
42 ZFP69 15 99.0 Highly correlated
43 ZNF441 15 43.0 Weakly correlated
44 ZNF133 14 99.0 Highly correlated
45 ZNF792 14 94.0 Moderately correlated
46 ZNF485 13 94.0 Moderately correlated
47 ZFP28 12 99.0 Highly correlated
48 ZNF320 12 28.9 Weakly correlated
49 ZNF74 12 99.0 Highly correlated
50 ZFP57 11 87.0 Moderately correlated
51 ZNF707 11 74.0 Weakly correlated
52 ZNF202 10 160.0 Weakly correlated
53 ZNF440 10 28.9 Weakly correlated
54 ZNF490 10 43.0 Weakly correlated
55 ZNF506 10 28.9 Weakly correlated
56 ZNF641 10 99.0 Highly correlated
57 ZNF136 9 74.0 Weakly correlated
58 ZNF264 9 99.0 Highly correlated
59 ZNF471 9 94.0 Moderately correlated
60 ZNF28 8 28.9 Weakly correlated
61 ZNF274 7 99.0 Highly correlated
62 ZNF547 7 74.0 Weakly correlated
63 ZNF585B 7 99.0 Highly correlated
64 ZNF778 7 74.0 Weakly correlated
65 ZNF26 6 99.0 Highly correlated
66 ZNF282 6 319.0 Weakly correlated
67 ZNF287 6 99.0 Highly correlated
68 ZNF677 6 99.0 Highly correlated
69 ZNF10 5 99.0 Highly correlated
70 ZNF519 5 19.6 Weakly correlated
71 ZNF585A 5 99.0 Highly correlated
72 ZNF823 5 43.0 Weakly correlated
73 ZNF184 4 99.0 Highly correlated
74 ZNF248 4 99.0 Highly correlated
75 ZNF284 4 43.0 Weakly correlated
76 ZNF354A 4 99.0 Highly correlated
77 ZNF425 4 94.0 Moderately correlated
78 ZNF483 4 99.0 Highly correlated
79 ZNF549 4 87.0 Moderately correlated
80 ZNF583 4 99.0 Highly correlated
81 ZNF682 4 28.9 Weakly correlated
82 ZNF695 4 28.9 Weakly correlated
83 ZFP30 3 99.0 Highly correlated
84 ZNF211 3 94.0 Moderately correlated
85 ZNF30 3 94.0 Moderately correlated
86 ZNF331 3 94.0 Moderately correlated
87 ZNF334 3 99.0 Highly correlated
88 ZNF350 3 99.0 Highly correlated
89 ZNF429 3 28.9 Weakly correlated
90 ZNF43 3 43.0 Weakly correlated
91 ZNF563 3 28.9 Weakly correlated
92 ZNF735 3 28.9 Weakly correlated
93 ZNF808 3 19.6 Weakly correlated
94 ZNF879 3 99.0 Highly correlated
95 ZFP82 2 99.0 Highly correlated
96 ZFP90 2 99.0 Highly correlated
97 ZNF114 2 28.9 Weakly correlated
98 ZNF135 2 94.0 Moderately correlated
99 ZNF141 2 43.0 Weakly correlated
100 ZNF160 2 74.0 Weakly correlated
101 ZNF222 2 43.0 Weakly correlated
102 ZNF347 2 43.0 Weakly correlated
103 ZNF354C 2 99.0 Highly correlated
104 ZNF436 2 180.0 Weakly correlated
105 ZNF445 2 99.0 Highly correlated
106 ZNF44 2 43.0 Weakly correlated
107 ZNF454 2 99.0 Highly correlated
108 ZNF468 2 28.9 Weakly correlated
109 ZNF559 2 74.0 Weakly correlated
110 ZNF567 2 99.0 Highly correlated
111 ZNF684 2 99.0 Highly correlated
112 ZNF75A 2 94.0 Moderately correlated
113 ZNF777 2 319.0 Weakly correlated
114 ZNF786 2 99.0 Highly correlated
115 ZNF816 2 28.9 Weakly correlated
116 ZNF93 2 8.6 Weakly correlated
117 ZIK1 1 87.0 Moderately correlated
118 ZKSCAN2 1 180.0 Weakly correlated
119 ZKSCAN5 1 160.0 Weakly correlated
120 ZNF124 1 43.0 Weakly correlated
121 ZNF169 1 94.0 Moderately correlated
122 ZNF17 1 69.0 Weakly correlated
123 ZNF224 1 69.0 Weakly correlated
124 ZNF250 1 99.0 Highly correlated
125 ZNF286A 1 160.0 Weakly correlated
126 ZNF337 1 43.0 Weakly correlated
127 ZNF343 1 74.0 Weakly correlated
128 ZNF41 1 99.0 Highly correlated
129 ZNF484 1 99.0 Highly correlated
130 ZNF510 1 99.0 Highly correlated
131 ZNF568 1 99.0 Highly correlated
132 ZNF569 1 99.0 Highly correlated
133 ZNF57 1 28.9 Weakly correlated
134 ZNF586 1 43.0 Weakly correlated
135 ZNF607 1 43.0 Weakly correlated
136 ZNF611 1 19.6 Weakly correlated
137 ZNF616 1 43.0 Weakly correlated
138 ZNF671 1 94.0 Moderately correlated
139 ZNF700 1 28.9 Weakly correlated
140 ZNF705E 1 0.0 Weakly correlated
141 ZNF727 1 19.6 Weakly correlated
142 ZNF730 1 19.6 Weakly correlated
143 ZNF776 1 43.0 Weakly correlated
144 ZNF780A 1 43.0 Weakly correlated
145 ZNF799 1 43.0 Weakly correlated
146 ZNF81 1 99.0 Highly correlated
147 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF84 67 99.0 Highly correlated
2 ZNF101 34 43.0 Weakly correlated
3 ZIM3 32 87.0 Moderately correlated
4 ZNF251 30 94.0 Moderately correlated
5 ZNF382 29 99.0 Highly correlated
6 ZNF92 24 28.9 Weakly correlated
7 ZNF486 22 8.6 Weakly correlated
8 ZNF534 18 19.6 Weakly correlated
9 ZNF723 17 15.2 Weakly correlated
10 ZFP69 14 99.0 Highly correlated
11 ZNF8 14 99.0 Highly correlated
12 ZNF766 14 43.0 Weakly correlated
13 ZNF263 13 180.0 Weakly correlated
14 ZNF701 12 28.9 Weakly correlated
15 ZNF558 12 99.0 Highly correlated
16 ZNF680 12 28.9 Weakly correlated
17 ZNF317 11 99.0 Highly correlated
18 ZNF75D 9 94.0 Moderately correlated
19 ZNF133 9 99.0 Highly correlated
20 ZNF18 7 160.0 Weakly correlated
21 ZNF136 7 74.0 Weakly correlated
22 ZNF394 7 99.0 Highly correlated
23 ZNF479 7 6.4 Weakly correlated
24 ZFP37 6 99.0 Highly correlated
25 ZNF74 6 99.0 Highly correlated
26 ZNF440 6 28.9 Weakly correlated
27 ZNF10 5 99.0 Highly correlated
28 ZNF793 5 99.0 Highly correlated
29 ZNF792 5 94.0 Moderately correlated
30 ZNF528 5 43.0 Weakly correlated
31 ZFP28 5 99.0 Highly correlated
32 ZNF140 5 99.0 Highly correlated
33 ZNF287 4 99.0 Highly correlated
34 ZNF197 4 99.0 Highly correlated
35 ZNF264 4 99.0 Highly correlated
36 ZNF320 4 28.9 Weakly correlated
37 ZNF485 4 94.0 Moderately correlated
38 ZNF589 4 28.9 Weakly correlated
39 ZNF350 3 99.0 Highly correlated
40 ZNF490 3 43.0 Weakly correlated
41 ZNF175 3 94.0 Moderately correlated
42 ZNF202 3 160.0 Weakly correlated
43 ZNF641 3 99.0 Highly correlated
44 ZKSCAN8 3 160.0 Weakly correlated
45 ZNF549 3 87.0 Moderately correlated
46 ZNF584 3 99.0 Highly correlated
47 ZNF705B 3 28.9 Weakly correlated
48 ZNF705D 3 28.9 Weakly correlated
49 ZNF610 2 28.9 Weakly correlated
50 ZNF2 2 99.0 Highly correlated
51 ZNF735 2 28.9 Weakly correlated
52 ZFP90 2 99.0 Highly correlated
53 ZNF679 2 28.9 Weakly correlated
54 ZNF354A 2 99.0 Highly correlated
55 ZFP69B 2 99.0 Highly correlated
56 ZNF257 2 0.0 Weakly correlated
57 ZFP57 2 87.0 Moderately correlated
58 ZNF707 2 74.0 Weakly correlated
59 ZNF28 2 28.9 Weakly correlated
60 ZNF471 2 94.0 Moderately correlated
61 ZNF468 2 28.9 Weakly correlated
62 ZNF248 2 99.0 Highly correlated
63 ZNF160 2 74.0 Weakly correlated
64 ZNF554 2 99.0 Highly correlated
65 ZNF506 2 28.9 Weakly correlated
66 ZNF347 1 43.0 Weakly correlated
67 ZNF879 1 99.0 Highly correlated
68 ZNF250 1 99.0 Highly correlated
69 ZNF583 1 99.0 Highly correlated
70 ZFP82 1 99.0 Highly correlated
71 ZNF81 1 99.0 Highly correlated
72 ZNF695 1 28.9 Weakly correlated
73 ZNF823 1 43.0 Weakly correlated
74 ZIK1 1 87.0 Moderately correlated
75 ZNF780A 1 43.0 Weakly correlated
76 ZKSCAN1 1 160.0 Weakly correlated
77 ZNF331 1 94.0 Moderately correlated
78 ZNF26 1 99.0 Highly correlated
79 ZNF141 1 43.0 Weakly correlated
80 ZNF337 1 43.0 Weakly correlated
81 ZNF483 1 99.0 Highly correlated
82 ZNF677 1 99.0 Highly correlated
83 ZNF324 1 99.0 Highly correlated
84 ZNF354C 1 99.0 Highly correlated
85 ZNF429 1 28.9 Weakly correlated
86 ZNF211 1 94.0 Moderately correlated
87 ZNF585B 1 99.0 Highly correlated
88 ZNF43 1 43.0 Weakly correlated
89 ZNF776 1 43.0 Weakly correlated
90 ZNF684 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF251 94.0 Moderately correlated
2 ZNF486 8.6 Weakly correlated
3 ZNF558 99.0 Highly correlated
4 ZNF701 28.9 Weakly correlated
5 ZNF84 99.0 Highly correlated
6 ZNF8 99.0 Highly correlated
7 ZNF92 28.9 Weakly correlated