ZRdb KZFP & Repeats
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LINE_L1ME3F_3END

  • Name
    L1ME3F_3END
  • Repbase
    L1ME3F_3end
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000301
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttagtatcaagaatatataaagaactcctacaaatcaataagaaaaagacaaacaacccaatagaaaaatgggcaaaagacatgaacaggcatttcacagaagaggaaacacgaatggccaataaacatatgaaaagatgctcaacctcattagtaatcagggaaatgcaaattaagaccacaatgagataccattttatacccattcgattggcaaaaattaagaagtctgacaataccaagtgttggagaggatgtggatcaacgggaactcttatacactgctggtgggagtgtaaattggtacaaccactttggaaaacaatttggcattatctcgtaaagttgaacattcgcataccctacgacccagcaattccactcctaggtatatacccaagagaaactcttgcacatgtgcaccaggagacatgtacaagaatgttcatagcagcactgttcgtaatagcaaaaaactggaaacaacccaaatgtccatcgacaggagaatggataaataaattgtggtatattcacacaatggaatattatacagcagtgaaaatgaatgaactacagctacacgcaacaacatggatgaatcttagaaacataatattgagtgaaaaaagcaagtcncagaagactacatacagtatgataccatttttataaagttcaaaaacaagcaaaactaaacaatatattgtttagggatacatacatatgtgataaaactataaanaaaagcaagggaatgataaacacaaaattcaggatagtggttacctctgggggggggagggaagagggggatgggatagggaaggagcacataggtagatgtaaagntattggtaatgttctagttcttaagttgggtggtgggttcacgggtgttcattttattattatgcttcaaactntacatatacgttacatatattctttgtatgtatcaaatattncataataaaaaaanaataaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 130 99.0 Highly correlated
2 ZNF394 57 99.0 Highly correlated
3 ZNF680 43 28.9 Weakly correlated
4 ZNF317 41 99.0 Highly correlated
5 ZNF766 34 43.0 Weakly correlated
6 ZNF263 32 180.0 Weakly correlated
7 ZNF558 25 99.0 Highly correlated
8 ZFP37 24 99.0 Highly correlated
9 ZIM3 23 87.0 Moderately correlated
10 ZNF18 23 160.0 Weakly correlated
11 ZNF92 23 28.9 Weakly correlated
12 ZNF705B 21 28.9 Weakly correlated
13 ZNF84 20 99.0 Highly correlated
14 ZNF101 19 43.0 Weakly correlated
15 ZNF2 19 99.0 Highly correlated
16 ZNF140 18 99.0 Highly correlated
17 ZNF248 18 99.0 Highly correlated
18 ZNF486 18 8.6 Weakly correlated
19 ZNF679 17 28.9 Weakly correlated
20 ZFP28 16 99.0 Highly correlated
21 ZNF175 13 94.0 Moderately correlated
22 ZNF324 12 99.0 Highly correlated
23 ZNF723 12 15.2 Weakly correlated
24 ZNF705D 11 28.9 Weakly correlated
25 ZFP69B 10 99.0 Highly correlated
26 ZKSCAN8 10 160.0 Weakly correlated
27 ZNF133 10 99.0 Highly correlated
28 ZNF479 10 6.4 Weakly correlated
29 ZNF589 10 28.9 Weakly correlated
30 ZNF610 10 28.9 Weakly correlated
31 ZNF8 10 99.0 Highly correlated
32 ZNF136 9 74.0 Weakly correlated
33 ZFP69 8 99.0 Highly correlated
34 ZNF10 8 99.0 Highly correlated
35 ZNF197 8 99.0 Highly correlated
36 ZNF251 8 94.0 Moderately correlated
37 ZNF257 8 0.0 Weakly correlated
38 ZNF534 8 19.6 Weakly correlated
39 ZNF584 8 99.0 Highly correlated
40 ZNF264 7 99.0 Highly correlated
41 ZNF320 7 28.9 Weakly correlated
42 ZNF554 7 99.0 Highly correlated
43 ZNF81 7 99.0 Highly correlated
44 ZNF33A 6 99.0 Highly correlated
45 ZNF701 6 28.9 Weakly correlated
46 ZFP82 5 99.0 Highly correlated
47 ZKSCAN1 5 160.0 Weakly correlated
48 ZNF354A 5 99.0 Highly correlated
49 ZNF441 5 43.0 Weakly correlated
50 ZFP30 4 99.0 Highly correlated
51 ZFP57 4 87.0 Moderately correlated
52 ZKSCAN5 4 160.0 Weakly correlated
53 ZNF160 4 74.0 Weakly correlated
54 ZNF182 4 99.0 Highly correlated
55 ZNF274 4 99.0 Highly correlated
56 ZNF41 4 99.0 Highly correlated
57 ZNF440 4 28.9 Weakly correlated
58 ZNF528 4 43.0 Weakly correlated
59 ZNF793 4 99.0 Highly correlated
60 ZNF28 3 28.9 Weakly correlated
61 ZNF331 3 94.0 Moderately correlated
62 ZNF506 3 28.9 Weakly correlated
63 ZNF597 3 94.0 Moderately correlated
64 ZNF641 3 99.0 Highly correlated
65 ZNF778 3 74.0 Weakly correlated
66 ZNF141 2 43.0 Weakly correlated
67 ZNF17 2 69.0 Weakly correlated
68 ZNF202 2 160.0 Weakly correlated
69 ZNF273 2 28.9 Weakly correlated
70 ZNF283 2 99.0 Highly correlated
71 ZNF287 2 99.0 Highly correlated
72 ZNF485 2 94.0 Moderately correlated
73 ZNF490 2 43.0 Weakly correlated
74 ZNF547 2 74.0 Weakly correlated
75 ZNF549 2 87.0 Moderately correlated
76 ZNF563 2 28.9 Weakly correlated
77 ZNF585B 2 99.0 Highly correlated
78 ZNF674 2 99.0 Highly correlated
79 ZNF682 2 28.9 Weakly correlated
80 ZNF735 2 28.9 Weakly correlated
81 ZNF792 2 94.0 Moderately correlated
82 ZIK1 1 87.0 Moderately correlated
83 ZNF124 1 43.0 Weakly correlated
84 ZNF154 1 94.0 Moderately correlated
85 ZNF169 1 94.0 Moderately correlated
86 ZNF189 1 99.0 Highly correlated
87 ZNF211 1 94.0 Moderately correlated
88 ZNF214 1 99.0 Highly correlated
89 ZNF230 1 28.9 Weakly correlated
90 ZNF282 1 319.0 Weakly correlated
91 ZNF334 1 99.0 Highly correlated
92 ZNF347 1 43.0 Weakly correlated
93 ZNF425 1 94.0 Moderately correlated
94 ZNF429 1 28.9 Weakly correlated
95 ZNF433 1 43.0 Weakly correlated
96 ZNF436 1 180.0 Weakly correlated
97 ZNF468 1 28.9 Weakly correlated
98 ZNF548 1 94.0 Moderately correlated
99 ZNF568 1 99.0 Highly correlated
100 ZNF573 1 94.0 Moderately correlated
101 ZNF583 1 99.0 Highly correlated
102 ZNF671 1 94.0 Moderately correlated
103 ZNF675 1 8.6 Weakly correlated
104 ZNF677 1 99.0 Highly correlated
105 ZNF695 1 28.9 Weakly correlated
106 ZNF707 1 74.0 Weakly correlated
107 ZNF75D 1 94.0 Moderately correlated
108 ZNF786 1 99.0 Highly correlated
109 ZNF799 1 43.0 Weakly correlated
110 ZNF823 1 43.0 Weakly correlated
111 ZNF85 1 28.9 Weakly correlated
112 ZNF878 1 43.0 Weakly correlated
113 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF84 19 99.0 Highly correlated
2 ZNF248 16 99.0 Highly correlated
3 ZIM3 14 87.0 Moderately correlated
4 ZNF382 13 99.0 Highly correlated
5 ZNF92 9 28.9 Weakly correlated
6 ZNF723 9 15.2 Weakly correlated
7 ZNF101 9 43.0 Weakly correlated
8 ZNF680 8 28.9 Weakly correlated
9 ZNF10 8 99.0 Highly correlated
10 ZNF766 8 43.0 Weakly correlated
11 ZNF558 7 99.0 Highly correlated
12 ZNF8 6 99.0 Highly correlated
13 ZNF81 6 99.0 Highly correlated
14 ZNF136 6 74.0 Weakly correlated
15 ZFP69 6 99.0 Highly correlated
16 ZFP28 5 99.0 Highly correlated
17 ZNF251 5 94.0 Moderately correlated
18 ZNF354A 4 99.0 Highly correlated
19 ZNF160 4 74.0 Weakly correlated
20 ZNF18 3 160.0 Weakly correlated
21 ZNF317 3 99.0 Highly correlated
22 ZFP82 3 99.0 Highly correlated
23 ZNF479 3 6.4 Weakly correlated
24 ZNF534 2 19.6 Weakly correlated
25 ZFP57 2 87.0 Moderately correlated
26 ZNF140 2 99.0 Highly correlated
27 ZNF287 2 99.0 Highly correlated
28 ZNF133 2 99.0 Highly correlated
29 ZNF324 2 99.0 Highly correlated
30 ZNF705B 2 28.9 Weakly correlated
31 ZNF41 2 99.0 Highly correlated
32 ZNF641 2 99.0 Highly correlated
33 ZNF485 2 94.0 Moderately correlated
34 ZNF705D 2 28.9 Weakly correlated
35 ZNF735 2 28.9 Weakly correlated
36 ZNF486 2 8.6 Weakly correlated
37 ZNF263 2 180.0 Weakly correlated
38 ZNF695 1 28.9 Weakly correlated
39 ZNF528 1 43.0 Weakly correlated
40 ZNF597 1 94.0 Moderately correlated
41 ZNF264 1 99.0 Highly correlated
42 ZNF433 1 43.0 Weakly correlated
43 ZNF677 1 99.0 Highly correlated
44 ZNF707 1 74.0 Weakly correlated
45 ZNF257 1 0.0 Weakly correlated
46 ZNF2 1 99.0 Highly correlated
47 ZNF674 1 99.0 Highly correlated
48 ZNF440 1 28.9 Weakly correlated
49 ZNF679 1 28.9 Weakly correlated
50 ZNF823 1 43.0 Weakly correlated
51 ZNF33A 1 99.0 Highly correlated
52 ZNF792 1 94.0 Moderately correlated
53 ZNF282 1 319.0 Weakly correlated
54 ZNF202 1 160.0 Weakly correlated
55 ZNF793 1 99.0 Highly correlated
56 ZNF549 1 87.0 Moderately correlated
57 ZNF331 1 94.0 Moderately correlated
58 ZNF154 1 94.0 Moderately correlated
59 ZNF141 1 43.0 Weakly correlated
60 ZKSCAN5 1 160.0 Weakly correlated
61 ZKSCAN1 1 160.0 Weakly correlated
62 ZIK1 1 87.0 Moderately correlated
63 ZFP37 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF248 99.0 Highly correlated
2 ZNF723 15.2 Weakly correlated
3 ZNF81 99.0 Highly correlated
4 ZNF84 99.0 Highly correlated
5 ZNF92 28.9 Weakly correlated