ZRdb KZFP & Repeats
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LINE_L1ME3E_3END

  • Name
    L1ME3E_3END
  • Repbase
    L1ME3E_3end
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000300
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttagtatccagaatatataaagaactcctacaaatcgataagaaaaagacaaacaacccaatagaaaaatgggcaaaagacatgaacaggcatttcacagaagaggaaacacgaatggccaataaacatatgaaaagatgctcaacctcattagtaatcagggaaatgcaaattaaaaccacaatgagataccattttacacccaccagattggcaaaaattaaaagtctgacaataccaagtgttggcgaggatgtggagcaacgggaactcttatacgctgctggtgggagtgtaaattggtacaaccactttggaaaacaatttggcattatctagtaaagttgaagatgcgcataccctacgacccagcaattccactcctaggtatataccctagagaaactcttgcacgtgtgcaccaggagacatgtacaagaatgttcatagcagcattgtttgtaatagcaaaaaactggaaacaacccaaatgtccatcgacaggagaatggataaataaattgtggtatattcatacaatggaatactatacagcagtgaaaatgaatgaactacagctacacgcatcaacatggatgaatctcagaaacataatgttgagcgaaaaaagcaagtcgcagaagaatacatacagtatgattccatttatataaagttcaaaaacatgcaaaactaaacaatatattgtttagggatacatacatacgtggtaaaactataaagaaaagcaagggaatgataaacacaaaattcaggatagtggttacctctgggggggggagggaagagggggatgcgatcggggaggggcacacagggggcttcaaaggtattggtaatgttctatttcttaagctgggtggtgggtacacgggtgttcgttttattattattctttatatcttacatatacgttntatatattctttgtatgtatganatatttcacaattaaaaaacaattaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 144 99.0 Highly correlated
2 ZNF317 65 99.0 Highly correlated
3 ZNF766 42 43.0 Weakly correlated
4 ZIM3 31 87.0 Moderately correlated
5 ZNF394 31 99.0 Highly correlated
6 ZNF486 24 8.6 Weakly correlated
7 ZNF263 23 180.0 Weakly correlated
8 ZNF274 22 99.0 Highly correlated
9 ZFP28 20 99.0 Highly correlated
10 ZNF589 19 28.9 Weakly correlated
11 ZNF679 19 28.9 Weakly correlated
12 ZFP37 18 99.0 Highly correlated
13 ZKSCAN8 16 160.0 Weakly correlated
14 ZNF680 16 28.9 Weakly correlated
15 ZNF175 15 94.0 Moderately correlated
16 ZNF248 15 99.0 Highly correlated
17 ZNF140 13 99.0 Highly correlated
18 ZNF558 13 99.0 Highly correlated
19 ZNF723 13 15.2 Weakly correlated
20 ZNF84 13 99.0 Highly correlated
21 ZNF251 12 94.0 Moderately correlated
22 ZNF2 12 99.0 Highly correlated
23 ZNF92 12 28.9 Weakly correlated
24 ZNF197 11 99.0 Highly correlated
25 ZNF705B 10 28.9 Weakly correlated
26 ZNF101 9 43.0 Weakly correlated
27 ZNF133 9 99.0 Highly correlated
28 ZNF320 9 28.9 Weakly correlated
29 ZNF584 9 99.0 Highly correlated
30 ZNF18 8 160.0 Weakly correlated
31 ZNF324 8 99.0 Highly correlated
32 ZNF479 8 6.4 Weakly correlated
33 ZNF485 8 94.0 Moderately correlated
34 ZNF534 8 19.6 Weakly correlated
35 ZNF585A 8 99.0 Highly correlated
36 ZNF75D 8 94.0 Moderately correlated
37 ZNF701 7 28.9 Weakly correlated
38 ZNF81 7 99.0 Highly correlated
39 ZNF8 7 99.0 Highly correlated
40 ZFP69B 6 99.0 Highly correlated
41 ZKSCAN1 6 160.0 Weakly correlated
42 ZNF490 6 43.0 Weakly correlated
43 ZNF136 5 74.0 Weakly correlated
44 ZNF554 5 99.0 Highly correlated
45 ZNF610 5 28.9 Weakly correlated
46 ZNF735 5 28.9 Weakly correlated
47 ZNF793 5 99.0 Highly correlated
48 ZNF257 4 0.0 Weakly correlated
49 ZNF549 4 87.0 Moderately correlated
50 ZNF682 4 28.9 Weakly correlated
51 ZNF705D 4 28.9 Weakly correlated
52 ZFP30 3 99.0 Highly correlated
53 ZFP57 3 87.0 Moderately correlated
54 ZFP82 3 99.0 Highly correlated
55 ZNF10 3 99.0 Highly correlated
56 ZNF26 3 99.0 Highly correlated
57 ZNF284 3 43.0 Weakly correlated
58 ZNF33A 3 99.0 Highly correlated
59 ZNF41 3 99.0 Highly correlated
60 ZNF429 3 28.9 Weakly correlated
61 ZNF506 3 28.9 Weakly correlated
62 ZNF519 3 19.6 Weakly correlated
63 ZNF528 3 43.0 Weakly correlated
64 ZNF677 3 99.0 Highly correlated
65 ZNF141 2 43.0 Weakly correlated
66 ZNF160 2 74.0 Weakly correlated
67 ZNF182 2 99.0 Highly correlated
68 ZNF202 2 160.0 Weakly correlated
69 ZNF264 2 99.0 Highly correlated
70 ZNF44 2 43.0 Weakly correlated
71 ZNF468 2 28.9 Weakly correlated
72 ZNF583 2 99.0 Highly correlated
73 ZNF671 2 94.0 Moderately correlated
74 ZNF879 2 99.0 Highly correlated
75 ZFP69 1 99.0 Highly correlated
76 ZFP90 1 99.0 Highly correlated
77 ZNF12 1 99.0 Highly correlated
78 ZNF157 1 99.0 Highly correlated
79 ZNF169 1 94.0 Moderately correlated
80 ZNF222 1 43.0 Weakly correlated
81 ZNF224 1 69.0 Weakly correlated
82 ZNF225 1 74.0 Weakly correlated
83 ZNF283 1 99.0 Highly correlated
84 ZNF28 1 28.9 Weakly correlated
85 ZNF334 1 99.0 Highly correlated
86 ZNF354A 1 99.0 Highly correlated
87 ZNF383 1 99.0 Highly correlated
88 ZNF440 1 28.9 Weakly correlated
89 ZNF454 1 99.0 Highly correlated
90 ZNF471 1 94.0 Moderately correlated
91 ZNF510 1 99.0 Highly correlated
92 ZNF525 1 19.6 Weakly correlated
93 ZNF530 1 28.9 Weakly correlated
94 ZNF560 1 43.0 Weakly correlated
95 ZNF563 1 28.9 Weakly correlated
96 ZNF567 1 99.0 Highly correlated
97 ZNF569 1 99.0 Highly correlated
98 ZNF573 1 94.0 Moderately correlated
99 ZNF585B 1 99.0 Highly correlated
100 ZNF597 1 94.0 Moderately correlated
101 ZNF607 1 43.0 Weakly correlated
102 ZNF611 1 19.6 Weakly correlated
103 ZNF613 1 99.0 Highly correlated
104 ZNF641 1 99.0 Highly correlated
105 ZNF649 1 28.9 Weakly correlated
106 ZNF674 1 99.0 Highly correlated
107 ZNF695 1 28.9 Weakly correlated
108 ZNF700 1 28.9 Weakly correlated
109 ZNF765 1 8.6 Weakly correlated
110 ZNF777 1 319.0 Weakly correlated
111 ZNF792 1 94.0 Moderately correlated
112 ZNF799 1 43.0 Weakly correlated
113 ZNF7 1 99.0 Highly correlated
114 ZNF808 1 19.6 Weakly correlated
115 ZNF823 1 43.0 Weakly correlated
116 ZNF91 1 6.0 Weakly correlated
117 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 15 87.0 Moderately correlated
2 ZNF317 14 99.0 Highly correlated
3 ZNF84 13 99.0 Highly correlated
4 ZNF248 13 99.0 Highly correlated
5 ZFP28 8 99.0 Highly correlated
6 ZNF81 7 99.0 Highly correlated
7 ZNF263 6 180.0 Weakly correlated
8 ZNF101 6 43.0 Weakly correlated
9 ZNF723 6 15.2 Weakly correlated
10 ZNF382 6 99.0 Highly correlated
11 ZNF486 6 8.6 Weakly correlated
12 ZNF8 5 99.0 Highly correlated
13 ZNF479 5 6.4 Weakly correlated
14 ZNF680 5 28.9 Weakly correlated
15 ZNF558 4 99.0 Highly correlated
16 ZNF140 4 99.0 Highly correlated
17 ZNF766 4 43.0 Weakly correlated
18 ZNF793 3 99.0 Highly correlated
19 ZNF10 3 99.0 Highly correlated
20 ZNF485 3 94.0 Moderately correlated
21 ZNF75D 3 94.0 Moderately correlated
22 ZNF735 3 28.9 Weakly correlated
23 ZNF133 3 99.0 Highly correlated
24 ZFP82 3 99.0 Highly correlated
25 ZNF701 3 28.9 Weakly correlated
26 ZNF136 3 74.0 Weakly correlated
27 ZNF92 3 28.9 Weakly correlated
28 ZNF320 3 28.9 Weakly correlated
29 ZNF549 2 87.0 Moderately correlated
30 ZKSCAN8 2 160.0 Weakly correlated
31 ZNF534 2 19.6 Weakly correlated
32 ZNF324 2 99.0 Highly correlated
33 ZNF490 2 43.0 Weakly correlated
34 ZNF677 2 99.0 Highly correlated
35 ZNF554 2 99.0 Highly correlated
36 ZNF585A 2 99.0 Highly correlated
37 ZNF264 2 99.0 Highly correlated
38 ZNF160 2 74.0 Weakly correlated
39 ZNF528 2 43.0 Weakly correlated
40 ZNF41 1 99.0 Highly correlated
41 ZNF705B 1 28.9 Weakly correlated
42 ZNF394 1 99.0 Highly correlated
43 ZNF354A 1 99.0 Highly correlated
44 ZNF7 1 99.0 Highly correlated
45 ZNF202 1 160.0 Weakly correlated
46 ZNF674 1 99.0 Highly correlated
47 ZNF257 1 0.0 Weakly correlated
48 ZFP57 1 87.0 Moderately correlated
49 ZFP69 1 99.0 Highly correlated
50 ZFP90 1 99.0 Highly correlated
51 ZNF175 1 94.0 Moderately correlated
52 ZNF18 1 160.0 Weakly correlated
53 ZNF28 1 28.9 Weakly correlated
54 ZNF671 1 94.0 Moderately correlated
55 ZNF225 1 74.0 Weakly correlated
56 ZNF26 1 99.0 Highly correlated
57 ZNF589 1 28.9 Weakly correlated
58 ZNF679 1 28.9 Weakly correlated
59 ZNF695 1 28.9 Weakly correlated
60 ZNF641 1 99.0 Highly correlated
61 ZNF2 1 99.0 Highly correlated
62 ZNF468 1 28.9 Weakly correlated
63 ZNF567 1 99.0 Highly correlated
64 ZNF197 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF101 43.0 Weakly correlated
2 ZNF248 99.0 Highly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF486 8.6 Weakly correlated
5 ZNF81 99.0 Highly correlated
6 ZNF84 99.0 Highly correlated