ZRdb KZFP & Repeats
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LINE_L1ME3D_3END

  • Name
    L1ME3D_3END
  • Repbase
    L1ME3D_3end
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000771
Description :

93% identical to L1ME3B & C.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttagtatccagaatatataaagaactcctacgaatcaataagaaaaagacaaacaacccaatagaaaaatgggcaaaagacatgaacaggcatttcacagaagaggaaacacgaatggccaataaacatatgaaaagatgctcaacctcattagtaatcagggaaatgcaaattaaaaccacaatgagataccatttcacacccaccagattggcaaaaattaaaagtctgacaataccaagtgttggcgaggatgtggagcaacgggaactctcatacactgctggtgggagtgtaaattggtacaaccactttggaaaacaatttggcattacctagtaaagttgaacatgcgcataccctacgacccagcaattccactcctaggtatataccctagagaaactcttgcacatgtgcaccaggagacacgtacaagaatgttcatagcagcattgttcgtaatagcaaaaaactggaaacaacccaaatgtccatcaacagtagaatggataaataaattgtggtatattcatacaatggaatactatacagcagtgaaaatgaatgaactacagctacacgcatcaacatggatgaatctcaaaaacataatgttgagcgaaaaaagcaagtcgcagaagaatacatacagtatgattccatttatataaagttcaaaaacaggcaaaactaaacaatatattgtttagggatacatacatatgtggtaaaactataaagaaaagcaagggaatgattaacacaaaattcaggatagcggttacctctgggggggggagggaagagggggatgcgatcgggaaggggcacgcagggggcttcnaaggtactggtaatgttctatttcttaagctgggtggtgggtacatgggtgttcgttttattattattctttaaactgtacatatacgttntatatattctttgtatgtatgatatatttcacaattaaaaaataatnaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 107 99.0 Highly correlated
2 ZNF317 56 99.0 Highly correlated
3 ZIM3 30 87.0 Moderately correlated
4 ZNF140 30 99.0 Highly correlated
5 ZNF394 29 99.0 Highly correlated
6 ZNF766 29 43.0 Weakly correlated
7 ZNF680 26 28.9 Weakly correlated
8 ZNF679 20 28.9 Weakly correlated
9 ZFP28 19 99.0 Highly correlated
10 ZNF18 19 160.0 Weakly correlated
11 ZNF723 19 15.2 Weakly correlated
12 ZNF486 18 8.6 Weakly correlated
13 ZNF92 18 28.9 Weakly correlated
14 ZNF84 17 99.0 Highly correlated
15 ZNF705B 16 28.9 Weakly correlated
16 ZNF263 15 180.0 Weakly correlated
17 ZNF534 13 19.6 Weakly correlated
18 ZNF175 12 94.0 Moderately correlated
19 ZNF101 11 43.0 Weakly correlated
20 ZNF589 11 28.9 Weakly correlated
21 ZKSCAN1 10 160.0 Weakly correlated
22 ZKSCAN8 10 160.0 Weakly correlated
23 ZNF33A 10 99.0 Highly correlated
24 ZNF558 10 99.0 Highly correlated
25 ZNF584 10 99.0 Highly correlated
26 ZNF133 9 99.0 Highly correlated
27 ZNF251 9 94.0 Moderately correlated
28 ZNF2 9 99.0 Highly correlated
29 ZNF479 9 6.4 Weakly correlated
30 ZNF705D 9 28.9 Weakly correlated
31 ZNF197 8 99.0 Highly correlated
32 ZNF248 8 99.0 Highly correlated
33 ZNF793 8 99.0 Highly correlated
34 ZFP37 7 99.0 Highly correlated
35 ZNF182 7 99.0 Highly correlated
36 ZNF257 7 0.0 Weakly correlated
37 ZNF274 7 99.0 Highly correlated
38 ZNF485 7 94.0 Moderately correlated
39 ZNF75D 7 94.0 Moderately correlated
40 ZNF10 6 99.0 Highly correlated
41 ZNF41 6 99.0 Highly correlated
42 ZNF441 6 43.0 Weakly correlated
43 ZNF610 6 28.9 Weakly correlated
44 ZNF284 5 43.0 Weakly correlated
45 ZNF597 5 94.0 Moderately correlated
46 ZNF823 5 43.0 Weakly correlated
47 ZFP57 4 87.0 Moderately correlated
48 ZFP69 4 99.0 Highly correlated
49 ZNF429 4 28.9 Weakly correlated
50 ZNF490 4 43.0 Weakly correlated
51 ZNF554 4 99.0 Highly correlated
52 ZNF567 4 99.0 Highly correlated
53 ZNF778 4 74.0 Weakly correlated
54 ZNF81 4 99.0 Highly correlated
55 ZFP30 3 99.0 Highly correlated
56 ZFP69B 3 99.0 Highly correlated
57 ZNF264 3 99.0 Highly correlated
58 ZNF26 3 99.0 Highly correlated
59 ZNF324 3 99.0 Highly correlated
60 ZNF354A 3 99.0 Highly correlated
61 ZNF425 3 94.0 Moderately correlated
62 ZNF480 3 43.0 Weakly correlated
63 ZNF506 3 28.9 Weakly correlated
64 ZNF528 3 43.0 Weakly correlated
65 ZNF547 3 74.0 Weakly correlated
66 ZNF585A 3 99.0 Highly correlated
67 ZNF585B 3 99.0 Highly correlated
68 ZNF816 3 28.9 Weakly correlated
69 ZFP82 2 99.0 Highly correlated
70 ZNF136 2 74.0 Weakly correlated
71 ZNF230 2 28.9 Weakly correlated
72 ZNF28 2 28.9 Weakly correlated
73 ZNF30 2 94.0 Moderately correlated
74 ZNF445 2 99.0 Highly correlated
75 ZNF468 2 28.9 Weakly correlated
76 ZNF519 2 19.6 Weakly correlated
77 ZNF549 2 87.0 Moderately correlated
78 ZNF563 2 28.9 Weakly correlated
79 ZNF677 2 99.0 Highly correlated
80 ZNF682 2 28.9 Weakly correlated
81 ZNF735 2 28.9 Weakly correlated
82 ZNF792 2 94.0 Moderately correlated
83 ZNF799 2 43.0 Weakly correlated
84 ZNF7 2 99.0 Highly correlated
85 ZNF8 2 99.0 Highly correlated
86 ZNF93 2 8.6 Weakly correlated
87 ZKSCAN5 1 160.0 Weakly correlated
88 ZNF135 1 94.0 Moderately correlated
89 ZNF189 1 99.0 Highly correlated
90 ZNF211 1 94.0 Moderately correlated
91 ZNF222 1 43.0 Weakly correlated
92 ZNF287 1 99.0 Highly correlated
93 ZNF333 1 99.0 Highly correlated
94 ZNF334 1 99.0 Highly correlated
95 ZNF347 1 43.0 Weakly correlated
96 ZNF483 1 99.0 Highly correlated
97 ZNF570 1 99.0 Highly correlated
98 ZNF573 1 94.0 Moderately correlated
99 ZNF613 1 99.0 Highly correlated
100 ZNF616 1 43.0 Weakly correlated
101 ZNF671 1 94.0 Moderately correlated
102 ZNF684 1 99.0 Highly correlated
103 ZNF695 1 28.9 Weakly correlated
104 ZNF701 1 28.9 Weakly correlated
105 ZNF786 1 99.0 Highly correlated
106 ZNF808 1 19.6 Weakly correlated
107 ZNF878 1 43.0 Weakly correlated
108 ZNF879 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 17 87.0 Moderately correlated
2 ZNF317 13 99.0 Highly correlated
3 ZNF84 12 99.0 Highly correlated
4 ZFP28 9 99.0 Highly correlated
5 ZNF723 9 15.2 Weakly correlated
6 ZNF382 8 99.0 Highly correlated
7 ZNF92 8 28.9 Weakly correlated
8 ZNF534 7 19.6 Weakly correlated
9 ZNF248 7 99.0 Highly correlated
10 ZNF680 7 28.9 Weakly correlated
11 ZNF10 6 99.0 Highly correlated
12 ZNF101 6 43.0 Weakly correlated
13 ZNF140 6 99.0 Highly correlated
14 ZNF766 5 43.0 Weakly correlated
15 ZNF705B 4 28.9 Weakly correlated
16 ZNF793 4 99.0 Highly correlated
17 ZNF133 4 99.0 Highly correlated
18 ZNF81 4 99.0 Highly correlated
19 ZNF479 4 6.4 Weakly correlated
20 ZNF41 3 99.0 Highly correlated
21 ZNF26 3 99.0 Highly correlated
22 ZNF33A 3 99.0 Highly correlated
23 ZNF485 3 94.0 Moderately correlated
24 ZFP69 3 99.0 Highly correlated
25 ZNF567 3 99.0 Highly correlated
26 ZNF816 3 28.9 Weakly correlated
27 ZNF75D 3 94.0 Moderately correlated
28 ZFP82 2 99.0 Highly correlated
29 ZNF7 2 99.0 Highly correlated
30 ZNF264 2 99.0 Highly correlated
31 ZNF263 2 180.0 Weakly correlated
32 ZNF677 2 99.0 Highly correlated
33 ZNF735 2 28.9 Weakly correlated
34 ZNF558 2 99.0 Highly correlated
35 ZNF490 2 43.0 Weakly correlated
36 ZNF705D 1 28.9 Weakly correlated
37 ZNF701 1 28.9 Weakly correlated
38 ZNF354A 1 99.0 Highly correlated
39 ZNF792 1 94.0 Moderately correlated
40 ZNF30 1 94.0 Moderately correlated
41 ZNF684 1 99.0 Highly correlated
42 ZNF679 1 28.9 Weakly correlated
43 ZNF480 1 43.0 Weakly correlated
44 ZNF468 1 28.9 Weakly correlated
45 ZNF394 1 99.0 Highly correlated
46 ZNF563 1 28.9 Weakly correlated
47 ZNF347 1 43.0 Weakly correlated
48 ZNF8 1 99.0 Highly correlated
49 ZNF597 1 94.0 Moderately correlated
50 ZNF486 1 8.6 Weakly correlated
51 ZNF483 1 99.0 Highly correlated
52 ZNF136 1 74.0 Weakly correlated
53 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF248 99.0 Highly correlated
2 ZNF723 15.2 Weakly correlated
3 ZNF84 99.0 Highly correlated
4 ZNF92 28.9 Weakly correlated