ZRdb KZFP & Repeats
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LINE_L1ME3C_3END

  • Name
    L1ME3C_3END
  • Repbase
    L1ME3C_3end
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000299
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttagtatccagaatatataaagaactcctacaaatcaataagaaaacagacaacccaatagaaaaatgggcaaaagatatgaacaggcaattcacagaagaggaaacncgaatggccaataaacatatgaaaagatgctcaacctcactagtaatcagggaaatgcaaattaaaacnacaatgagataccatttcacacccatcagattggcaaaaatttaaaagtctgacaataccaagtgttggcgaggatgtggagcaacgggaactctcatacactgctggtgggagtgtaaattggtacaaccactttggagagcaatttggcaatatctagtaaagttgaagatgcgcataccctacgacccagcaattccactcctaggtatataccctagagaaactctcgcacgtgtgcacaaggagacatgtacaagaatgttcattgcagcattgtttgtaatagcgaaaaattggaaacaacctaaatgtccatcaacaggagaatggataaataaattgtggtatattcatacaatggaatactatacagcagttaaaatgaatgaactagagctacacgtatcaacatggataaatctcaaaaacataatgttgagcgaaaaaagcaagttgcagaagaatacgtacagtatgataccatttatataaagtttaaaaacacgcaaaacaatactatattgtttacggatacatacatatgtagtaaaagtataaaaacatgcatgggaatgataaacaccaaattcaggatagtggttacctctggggagggagggaagggaatgggatcggggaggagtacacaggggacttcaactgtatctgtaatgttttatttcttaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 68 99.0 Highly correlated
2 ZIM3 30 87.0 Moderately correlated
3 ZNF317 27 99.0 Highly correlated
4 ZNF394 25 99.0 Highly correlated
5 ZNF766 24 43.0 Weakly correlated
6 ZNF263 16 180.0 Weakly correlated
7 ZNF140 16 99.0 Highly correlated
8 ZNF705B 15 28.9 Weakly correlated
9 ZNF92 13 28.9 Weakly correlated
10 ZNF84 13 99.0 Highly correlated
11 ZFP37 11 99.0 Highly correlated
12 ZNF680 11 28.9 Weakly correlated
13 ZNF101 10 43.0 Weakly correlated
14 ZNF248 10 99.0 Highly correlated
15 ZKSCAN1 10 160.0 Weakly correlated
16 ZNF2 10 99.0 Highly correlated
17 ZNF534 9 19.6 Weakly correlated
18 ZNF589 9 28.9 Weakly correlated
19 ZNF486 9 8.6 Weakly correlated
20 ZNF18 8 160.0 Weakly correlated
21 ZNF197 8 99.0 Highly correlated
22 ZKSCAN8 8 160.0 Weakly correlated
23 ZNF723 8 15.2 Weakly correlated
24 ZNF274 8 99.0 Highly correlated
25 ZNF679 7 28.9 Weakly correlated
26 ZNF320 7 28.9 Weakly correlated
27 ZNF558 7 99.0 Highly correlated
28 ZNF182 7 99.0 Highly correlated
29 ZNF175 7 94.0 Moderately correlated
30 ZFP69B 6 99.0 Highly correlated
31 ZNF705D 6 28.9 Weakly correlated
32 ZNF485 6 94.0 Moderately correlated
33 ZNF75D 6 94.0 Moderately correlated
34 ZNF584 5 99.0 Highly correlated
35 ZNF554 5 99.0 Highly correlated
36 ZNF701 5 28.9 Weakly correlated
37 ZNF8 5 99.0 Highly correlated
38 ZFP30 5 99.0 Highly correlated
39 ZFP28 5 99.0 Highly correlated
40 ZFP57 5 87.0 Moderately correlated
41 ZFP69 5 99.0 Highly correlated
42 ZNF133 5 99.0 Highly correlated
43 ZNF41 4 99.0 Highly correlated
44 ZNF10 4 99.0 Highly correlated
45 ZNF610 4 28.9 Weakly correlated
46 ZNF506 4 28.9 Weakly correlated
47 ZNF479 4 6.4 Weakly correlated
48 ZNF257 3 0.0 Weakly correlated
49 ZNF793 3 99.0 Highly correlated
50 ZNF585B 3 99.0 Highly correlated
51 ZNF585A 3 99.0 Highly correlated
52 ZNF331 3 94.0 Moderately correlated
53 ZNF30 2 94.0 Moderately correlated
54 ZNF33A 2 99.0 Highly correlated
55 ZNF879 2 99.0 Highly correlated
56 ZNF7 2 99.0 Highly correlated
57 ZNF75A 2 94.0 Moderately correlated
58 ZNF735 2 28.9 Weakly correlated
59 ZNF441 2 43.0 Weakly correlated
60 ZNF202 2 160.0 Weakly correlated
61 ZNF251 2 94.0 Moderately correlated
62 ZNF597 2 94.0 Moderately correlated
63 ZNF454 2 99.0 Highly correlated
64 ZNF324 2 99.0 Highly correlated
65 ZNF490 2 43.0 Weakly correlated
66 ZNF471 2 94.0 Moderately correlated
67 ZNF549 2 87.0 Moderately correlated
68 ZNF716 1 19.6 Weakly correlated
69 ZNF429 1 28.9 Weakly correlated
70 ZNF81 1 99.0 Highly correlated
71 ZNF519 1 19.6 Weakly correlated
72 ZNF436 1 180.0 Weakly correlated
73 ZNF780A 1 43.0 Weakly correlated
74 ZFP82 1 99.0 Highly correlated
75 ZNF43 1 43.0 Weakly correlated
76 ZNF528 1 43.0 Weakly correlated
77 ZNF736 1 43.0 Weakly correlated
78 ZNF28 1 28.9 Weakly correlated
79 ZNF12 1 99.0 Highly correlated
80 ZNF468 1 28.9 Weakly correlated
81 ZNF135 1 94.0 Moderately correlated
82 ZNF189 1 99.0 Highly correlated
83 ZNF284 1 43.0 Weakly correlated
84 ZNF26 1 99.0 Highly correlated
85 ZNF677 1 99.0 Highly correlated
86 ZNF675 1 8.6 Weakly correlated
87 ZNF613 1 99.0 Highly correlated
88 ZNF445 1 99.0 Highly correlated
89 ZNF567 1 99.0 Highly correlated
90 ZNF595 1 43.0 Weakly correlated
91 ZNF354A 1 99.0 Highly correlated
92 ZNF264 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 15 87.0 Moderately correlated
2 ZNF84 10 99.0 Highly correlated
3 ZNF248 8 99.0 Highly correlated
4 ZNF534 6 19.6 Weakly correlated
5 ZFP69 5 99.0 Highly correlated
6 ZNF485 5 94.0 Moderately correlated
7 ZNF382 5 99.0 Highly correlated
8 ZNF101 4 43.0 Weakly correlated
9 ZNF10 4 99.0 Highly correlated
10 ZNF317 4 99.0 Highly correlated
11 ZNF723 4 15.2 Weakly correlated
12 ZNF8 4 99.0 Highly correlated
13 ZNF133 3 99.0 Highly correlated
14 ZNF140 3 99.0 Highly correlated
15 ZNF793 3 99.0 Highly correlated
16 ZNF92 3 28.9 Weakly correlated
17 ZNF701 2 28.9 Weakly correlated
18 ZNF766 2 43.0 Weakly correlated
19 ZFP28 2 99.0 Highly correlated
20 ZNF202 2 160.0 Weakly correlated
21 ZNF41 2 99.0 Highly correlated
22 ZNF75D 2 94.0 Moderately correlated
23 ZFP57 2 87.0 Moderately correlated
24 ZKSCAN1 2 160.0 Weakly correlated
25 ZNF18 2 160.0 Weakly correlated
26 ZNF680 1 28.9 Weakly correlated
27 ZFP82 1 99.0 Highly correlated
28 ZNF705D 1 28.9 Weakly correlated
29 ZNF675 1 8.6 Weakly correlated
30 ZNF197 1 99.0 Highly correlated
31 ZNF175 1 94.0 Moderately correlated
32 ZNF479 1 6.4 Weakly correlated
33 ZNF585A 1 99.0 Highly correlated
34 ZNF471 1 94.0 Moderately correlated
35 ZNF589 1 28.9 Weakly correlated
36 ZNF251 1 94.0 Moderately correlated
37 ZNF597 1 94.0 Moderately correlated
38 ZNF506 1 28.9 Weakly correlated
39 ZNF331 1 94.0 Moderately correlated
40 ZNF716 1 19.6 Weakly correlated
41 ZNF486 1 8.6 Weakly correlated
42 ZNF33A 1 99.0 Highly correlated
43 ZNF324 1 99.0 Highly correlated
44 ZNF26 1 99.0 Highly correlated
45 ZNF81 1 99.0 Highly correlated
46 ZNF735 1 28.9 Weakly correlated
47 ZNF705B 1 28.9 Weakly correlated
48 ZNF263 1 180.0 Weakly correlated
49 ZNF677 1 99.0 Highly correlated
50 ZNF549 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF248 99.0 Highly correlated
2 ZNF84 99.0 Highly correlated