ZRdb KZFP & Repeats
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LINE_L1ME3CZ_3END

  • Name
    L1ME3CZ_3END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000635
Description :

1-873 96% identical to the full L1ME3C_3end consensus, but, reminiscentof L1ME2z_3end, with an extension 880-997 (end) corresponding 84% tothe 3end of L1MC4_3end.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttagtatccagaatatataaagaactcctacaaatcaataagaaaaagacaacccaatagaaaaatgggcaaaggatatgaacaggcaattcacagaagaggaaacccgaatggccaataaacatatgaaaagatgctcaacctcactagtaatcagggaaatgcaaattaaaacnacaatgagataccatttcacacccatcagattggcaaaaatttaaaagtctgacaataccaagtgttggcgaggatgtggagaaacgggaactctcatacactgctggtgggagtgtaaattggtacaaccactttggagagcaatttggcaatatctagtaaagttgaagatgcgcataccctacgacccagcaattccacttctaggtatataccctagagaaactctcgcacatgtgcacaaggagacatgtacaaggatgttcattgcagcattgtttgtaatagcgaaaaattggaaacaacctaaatgtccatcaataggggaatggataaataaattgtggtatattcatacaatggaatactatacagcagttaaaatgaatgaactagatctacatgtatcaacatggataaatctcaaaaacataatgttgagtgaaaaaagcaagttgcagaangatacgtacagtatgataccatttatataaagtttaaaaacatgcaaaacaatactatatattgtttatggatacatacatatgtagtaaaagtataaaaacatgnacgggaangatacacaccaanttcaggatagtggttacctctggggagggagggagggaaatgggattagggaggggtacaaagggggcttcaactgtatctgtaatgttttatttcttttaaaaaaagatctgaagcaaatatggcaaaatgttaacatttgttaaatctgggtggtgggtacatgggtgtttgttatattattctctgtacttttctgtatgtttgaaatatttcataattttaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 332 99.0 Highly correlated
2 ZIM3 115 87.0 Moderately correlated
3 ZNF766 111 43.0 Weakly correlated
4 ZNF394 93 99.0 Highly correlated
5 ZNF317 86 99.0 Highly correlated
6 ZNF680 74 28.9 Weakly correlated
7 ZNF84 71 99.0 Highly correlated
8 ZNF92 67 28.9 Weakly correlated
9 ZNF558 65 99.0 Highly correlated
10 ZNF263 59 180.0 Weakly correlated
11 ZNF101 56 43.0 Weakly correlated
12 ZNF2 47 99.0 Highly correlated
13 ZNF18 45 160.0 Weakly correlated
14 ZNF679 44 28.9 Weakly correlated
15 ZFP37 42 99.0 Highly correlated
16 ZNF589 41 28.9 Weakly correlated
17 ZNF705B 39 28.9 Weakly correlated
18 ZNF723 39 15.2 Weakly correlated
19 ZNF175 37 94.0 Moderately correlated
20 ZFP69B 33 99.0 Highly correlated
21 ZNF793 31 99.0 Highly correlated
22 ZKSCAN1 30 160.0 Weakly correlated
23 ZNF140 30 99.0 Highly correlated
24 ZNF197 29 99.0 Highly correlated
25 ZNF705D 29 28.9 Weakly correlated
26 ZNF248 28 99.0 Highly correlated
27 ZNF324 28 99.0 Highly correlated
28 ZNF584 28 99.0 Highly correlated
29 ZNF554 25 99.0 Highly correlated
30 ZNF610 25 28.9 Weakly correlated
31 ZNF534 24 19.6 Weakly correlated
32 ZNF251 22 94.0 Moderately correlated
33 ZKSCAN8 21 160.0 Weakly correlated
34 ZNF274 18 99.0 Highly correlated
35 ZNF133 16 99.0 Highly correlated
36 ZNF257 16 0.0 Weakly correlated
37 ZNF75D 16 94.0 Moderately correlated
38 ZNF486 15 8.6 Weakly correlated
39 ZFP28 14 99.0 Highly correlated
40 ZFP69 14 99.0 Highly correlated
41 ZNF485 14 94.0 Moderately correlated
42 ZNF547 13 74.0 Weakly correlated
43 ZNF136 12 74.0 Weakly correlated
44 ZNF320 12 28.9 Weakly correlated
45 ZNF479 12 6.4 Weakly correlated
46 ZFP57 11 87.0 Moderately correlated
47 ZNF182 11 99.0 Highly correlated
48 ZNF585A 11 99.0 Highly correlated
49 ZNF597 11 94.0 Moderately correlated
50 ZNF701 11 28.9 Weakly correlated
51 ZNF585B 10 99.0 Highly correlated
52 ZNF10 9 99.0 Highly correlated
53 ZNF264 9 99.0 Highly correlated
54 ZNF792 9 94.0 Moderately correlated
55 ZNF160 8 74.0 Weakly correlated
56 ZNF441 8 43.0 Weakly correlated
57 ZNF490 8 43.0 Weakly correlated
58 ZNF81 8 99.0 Highly correlated
59 ZNF26 7 99.0 Highly correlated
60 ZNF506 7 28.9 Weakly correlated
61 ZNF284 6 43.0 Weakly correlated
62 ZNF41 6 99.0 Highly correlated
63 ZNF471 6 94.0 Moderately correlated
64 ZNF519 6 19.6 Weakly correlated
65 ZNF641 6 99.0 Highly correlated
66 ZNF74 6 99.0 Highly correlated
67 ZNF347 5 43.0 Weakly correlated
68 ZNF429 5 28.9 Weakly correlated
69 ZNF735 5 28.9 Weakly correlated
70 ZNF202 4 160.0 Weakly correlated
71 ZNF33A 4 99.0 Highly correlated
72 ZNF354A 4 99.0 Highly correlated
73 ZNF528 4 43.0 Weakly correlated
74 ZNF549 4 87.0 Moderately correlated
75 ZNF573 4 94.0 Moderately correlated
76 ZNF682 4 28.9 Weakly correlated
77 ZNF695 4 28.9 Weakly correlated
78 ZNF707 4 74.0 Weakly correlated
79 ZNF823 4 43.0 Weakly correlated
80 ZNF93 4 8.6 Weakly correlated
81 ZFP82 3 99.0 Highly correlated
82 ZFP90 3 99.0 Highly correlated
83 ZNF287 3 99.0 Highly correlated
84 ZNF350 3 99.0 Highly correlated
85 ZNF418 3 43.0 Weakly correlated
86 ZNF425 3 94.0 Moderately correlated
87 ZNF43 3 43.0 Weakly correlated
88 ZNF440 3 28.9 Weakly correlated
89 ZNF44 3 43.0 Weakly correlated
90 ZNF468 3 28.9 Weakly correlated
91 ZNF677 3 99.0 Highly correlated
92 ZNF7 3 99.0 Highly correlated
93 ZNF816 3 28.9 Weakly correlated
94 ZNF879 3 99.0 Highly correlated
95 ZNF8 3 99.0 Highly correlated
96 ZNF157 2 99.0 Highly correlated
97 ZNF214 2 99.0 Highly correlated
98 ZNF250 2 99.0 Highly correlated
99 ZNF273 2 28.9 Weakly correlated
100 ZNF30 2 94.0 Moderately correlated
101 ZNF557 2 15.2 Weakly correlated
102 ZNF559 2 74.0 Weakly correlated
103 ZNF563 2 28.9 Weakly correlated
104 ZNF567 2 99.0 Highly correlated
105 ZNF671 2 94.0 Moderately correlated
106 ZNF675 2 8.6 Weakly correlated
107 ZNF727 2 19.6 Weakly correlated
108 ZNF786 2 99.0 Highly correlated
109 ZFP30 1 99.0 Highly correlated
110 ZIK1 1 87.0 Moderately correlated
111 ZKSCAN5 1 160.0 Weakly correlated
112 ZNF141 1 43.0 Weakly correlated
113 ZNF184 1 99.0 Highly correlated
114 ZNF225 1 74.0 Weakly correlated
115 ZNF230 1 28.9 Weakly correlated
116 ZNF28 1 28.9 Weakly correlated
117 ZNF337 1 43.0 Weakly correlated
118 ZNF343 1 74.0 Weakly correlated
119 ZNF354B 1 99.0 Highly correlated
120 ZNF445 1 99.0 Highly correlated
121 ZNF45 1 99.0 Highly correlated
122 ZNF460 1 74.0 Weakly correlated
123 ZNF461 1 99.0 Highly correlated
124 ZNF483 1 99.0 Highly correlated
125 ZNF510 1 99.0 Highly correlated
126 ZNF525 1 19.6 Weakly correlated
127 ZNF565 1 99.0 Highly correlated
128 ZNF569 1 99.0 Highly correlated
129 ZNF570 1 99.0 Highly correlated
130 ZNF586 1 43.0 Weakly correlated
131 ZNF605 1 99.0 Highly correlated
132 ZNF613 1 99.0 Highly correlated
133 ZNF669 1 43.0 Weakly correlated
134 ZNF674 1 99.0 Highly correlated
135 ZNF700 1 28.9 Weakly correlated
136 ZNF716 1 19.6 Weakly correlated
137 ZNF730 1 19.6 Weakly correlated
138 ZNF736 1 43.0 Weakly correlated
139 ZNF749 1 28.9 Weakly correlated
140 ZNF778 1 74.0 Weakly correlated
141 ZNF799 1 43.0 Weakly correlated
142 ZNF808 1 19.6 Weakly correlated
143 ZNF845 1 28.9 Weakly correlated
144 ZNF878 1 43.0 Weakly correlated
145 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF84 59 99.0 Highly correlated
2 ZIM3 49 87.0 Moderately correlated
3 ZNF101 30 43.0 Weakly correlated
4 ZNF92 25 28.9 Weakly correlated
5 ZNF382 23 99.0 Highly correlated
6 ZNF248 19 99.0 Highly correlated
7 ZNF558 16 99.0 Highly correlated
8 ZNF317 16 99.0 Highly correlated
9 ZNF766 15 43.0 Weakly correlated
10 ZNF723 14 15.2 Weakly correlated
11 ZNF534 13 19.6 Weakly correlated
12 ZNF680 12 28.9 Weakly correlated
13 ZFP69 11 99.0 Highly correlated
14 ZNF485 10 94.0 Moderately correlated
15 ZNF263 9 180.0 Weakly correlated
16 ZNF793 9 99.0 Highly correlated
17 ZNF136 9 74.0 Weakly correlated
18 ZNF10 9 99.0 Highly correlated
19 ZNF75D 8 94.0 Moderately correlated
20 ZNF81 8 99.0 Highly correlated
21 ZNF133 7 99.0 Highly correlated
22 ZNF160 7 74.0 Weakly correlated
23 ZNF251 7 94.0 Moderately correlated
24 ZNF26 5 99.0 Highly correlated
25 ZNF18 5 160.0 Weakly correlated
26 ZNF74 5 99.0 Highly correlated
27 ZNF347 5 43.0 Weakly correlated
28 ZFP28 5 99.0 Highly correlated
29 ZNF140 5 99.0 Highly correlated
30 ZFP57 4 87.0 Moderately correlated
31 ZNF641 4 99.0 Highly correlated
32 ZNF490 4 43.0 Weakly correlated
33 ZNF792 4 94.0 Moderately correlated
34 ZNF394 4 99.0 Highly correlated
35 ZNF701 4 28.9 Weakly correlated
36 ZNF585A 4 99.0 Highly correlated
37 ZNF264 4 99.0 Highly correlated
38 ZNF41 4 99.0 Highly correlated
39 ZNF175 4 94.0 Moderately correlated
40 ZNF705D 4 28.9 Weakly correlated
41 ZNF324 4 99.0 Highly correlated
42 ZNF197 3 99.0 Highly correlated
43 ZNF257 3 0.0 Weakly correlated
44 ZNF879 3 99.0 Highly correlated
45 ZNF584 3 99.0 Highly correlated
46 ZNF554 3 99.0 Highly correlated
47 ZFP82 3 99.0 Highly correlated
48 ZFP37 3 99.0 Highly correlated
49 ZNF471 2 94.0 Moderately correlated
50 ZNF816 2 28.9 Weakly correlated
51 ZNF679 2 28.9 Weakly correlated
52 ZNF597 2 94.0 Moderately correlated
53 ZNF486 2 8.6 Weakly correlated
54 ZNF585B 2 99.0 Highly correlated
55 ZNF479 2 6.4 Weakly correlated
56 ZNF44 2 43.0 Weakly correlated
57 ZNF354A 2 99.0 Highly correlated
58 ZNF425 2 94.0 Moderately correlated
59 ZNF320 2 28.9 Weakly correlated
60 ZNF202 2 160.0 Weakly correlated
61 ZNF589 2 28.9 Weakly correlated
62 ZNF250 2 99.0 Highly correlated
63 ZNF7 2 99.0 Highly correlated
64 ZNF8 2 99.0 Highly correlated
65 ZNF823 1 43.0 Weakly correlated
66 ZKSCAN5 1 160.0 Weakly correlated
67 ZKSCAN1 1 160.0 Weakly correlated
68 ZIK1 1 87.0 Moderately correlated
69 ZNF287 1 99.0 Highly correlated
70 ZNF468 1 28.9 Weakly correlated
71 ZFP69B 1 99.0 Highly correlated
72 ZNF350 1 99.0 Highly correlated
73 ZNF671 1 94.0 Moderately correlated
74 ZNF675 1 8.6 Weakly correlated
75 ZNF677 1 99.0 Highly correlated
76 ZNF567 1 99.0 Highly correlated
77 ZNF2 1 99.0 Highly correlated
78 ZNF45 1 99.0 Highly correlated
79 ZNF483 1 99.0 Highly correlated
80 ZNF735 1 28.9 Weakly correlated
81 ZNF225 1 74.0 Weakly correlated
82 ZNF337 1 43.0 Weakly correlated
83 ZNF33A 1 99.0 Highly correlated
84 ZNF705B 1 28.9 Weakly correlated
85 ZNF440 1 28.9 Weakly correlated
86 ZNF506 1 28.9 Weakly correlated
87 ZNF525 1 19.6 Weakly correlated
88 ZNF716 1 19.6 Weakly correlated
89 ZNF695 1 28.9 Weakly correlated
90 ZNF43 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF160 74.0 Weakly correlated
3 ZNF248 99.0 Highly correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF558 99.0 Highly correlated
6 ZNF723 15.2 Weakly correlated
7 ZNF793 99.0 Highly correlated
8 ZNF81 99.0 Highly correlated
9 ZNF84 99.0 Highly correlated
10 ZNF92 28.9 Weakly correlated