ZRdb KZFP & Repeats
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LINE_L1ME3B_3END

  • Name
    L1ME3B_3END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000298
Description :

L1ME3B_3end contain a (near) consensus target site for Charlie type DNAtransposon at pos 396-403 (CCCTAGAG). These sites are often occupied (ineither orientation) by contemporary or somewhat younger elements (likeMER113).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctagtatccagaatatataaagaactcctacaaatcaataagaaaaagacaaacaacccaatagaaaaatgggcaaaagacttgaacaggcacttcacaaaagaggaaatccaaatggccaataaacatatgaaaaggtgctcaacctcattagtaatcagggaaatgcaaattaaaaccacaatgagataccactacacacccaccagantggcaaaaattnaaaagtctgacaataccaagtgttggcgaggatgtggagcaacgggaactctcatacactgctggtgggagtgtaaattggtacaaccactttggaaaacagtttggcattatctantaaagttgaagatacgcataccctatgacccagcaattccactcctaggtatataccctagagaaacgcgtgcacatgtgcaccagganacatgtacaagaatgttcatagcagcattgttcgtaatagccnaaaactggaaacaacccaaatgtccatcaacagtagaatggataaataaattgtggtatattcatacaatggaatactatacagcaatgaaaatgaacgaactacagctacacgcaacaacatggatgaatctcacaaacataatgttgagcgaaagaagcaagacacaaaagaatacatacngtatgattccatttatataaagttcaaaaacaggcaaaactaaactatattgtttagggatgcatacntaggtggtaaaactataaagaaaagcaaggaaatgattaccataaaagtcaggatagtggttacctctgggggggggagggaagagggggttgtgatcgggaaggggcacgcggggggcttctggggtgctggcaatgttctatttcttgacctgggtggtggttacacgggtgttcgctttataatnattcgttaaactgtacatttatgttttatgcactttttgtatgtatgttatatttcacaattnaaaagtaattaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 403 99.0 Highly correlated
2 ZNF317 99 99.0 Highly correlated
3 ZIM3 85 87.0 Moderately correlated
4 ZNF394 85 99.0 Highly correlated
5 ZNF766 63 43.0 Weakly correlated
6 ZNF263 62 180.0 Weakly correlated
7 ZNF92 51 28.9 Weakly correlated
8 ZNF558 47 99.0 Highly correlated
9 ZNF680 45 28.9 Weakly correlated
10 ZNF140 40 99.0 Highly correlated
11 ZFP37 38 99.0 Highly correlated
12 ZNF2 38 99.0 Highly correlated
13 ZNF101 35 43.0 Weakly correlated
14 ZNF84 35 99.0 Highly correlated
15 ZNF18 34 160.0 Weakly correlated
16 ZNF248 32 99.0 Highly correlated
17 ZNF486 32 8.6 Weakly correlated
18 ZFP28 30 99.0 Highly correlated
19 ZNF705B 30 28.9 Weakly correlated
20 ZNF793 30 99.0 Highly correlated
21 ZNF589 29 28.9 Weakly correlated
22 ZNF723 29 15.2 Weakly correlated
23 ZNF679 26 28.9 Weakly correlated
24 ZNF28 22 28.9 Weakly correlated
25 ZFP57 21 87.0 Moderately correlated
26 ZNF324 21 99.0 Highly correlated
27 ZKSCAN8 20 160.0 Weakly correlated
28 ZNF175 20 94.0 Moderately correlated
29 ZFP30 19 99.0 Highly correlated
30 ZNF479 19 6.4 Weakly correlated
31 ZNF610 19 28.9 Weakly correlated
32 ZNF705D 19 28.9 Weakly correlated
33 ZNF81 19 99.0 Highly correlated
34 ZKSCAN1 18 160.0 Weakly correlated
35 ZNF534 18 19.6 Weakly correlated
36 ZNF251 17 94.0 Moderately correlated
37 ZFP69 15 99.0 Highly correlated
38 ZNF197 15 99.0 Highly correlated
39 ZNF441 15 43.0 Weakly correlated
40 ZFP69B 14 99.0 Highly correlated
41 ZNF182 13 99.0 Highly correlated
42 ZNF485 13 94.0 Moderately correlated
43 ZNF133 12 99.0 Highly correlated
44 ZNF585A 12 99.0 Highly correlated
45 ZNF8 12 99.0 Highly correlated
46 ZNF136 11 74.0 Weakly correlated
47 ZNF506 11 28.9 Weakly correlated
48 ZNF75D 11 94.0 Moderately correlated
49 ZNF320 10 28.9 Weakly correlated
50 ZNF597 10 94.0 Moderately correlated
51 ZNF792 10 94.0 Moderately correlated
52 ZFP82 9 99.0 Highly correlated
53 ZNF257 9 0.0 Weakly correlated
54 ZNF354A 9 99.0 Highly correlated
55 ZNF701 9 28.9 Weakly correlated
56 ZNF10 8 99.0 Highly correlated
57 ZNF41 8 99.0 Highly correlated
58 ZNF26 7 99.0 Highly correlated
59 ZNF554 7 99.0 Highly correlated
60 ZNF584 7 99.0 Highly correlated
61 ZNF287 6 99.0 Highly correlated
62 ZNF33A 6 99.0 Highly correlated
63 ZNF471 6 94.0 Moderately correlated
64 ZNF823 6 43.0 Weakly correlated
65 ZNF264 5 99.0 Highly correlated
66 ZNF429 5 28.9 Weakly correlated
67 ZNF528 5 43.0 Weakly correlated
68 ZNF585B 5 99.0 Highly correlated
69 ZNF641 5 99.0 Highly correlated
70 ZNF735 5 28.9 Weakly correlated
71 ZNF284 4 43.0 Weakly correlated
72 ZNF490 4 43.0 Weakly correlated
73 ZNF549 4 87.0 Moderately correlated
74 ZNF567 4 99.0 Highly correlated
75 ZNF786 4 99.0 Highly correlated
76 ZNF816 4 28.9 Weakly correlated
77 ZNF160 3 74.0 Weakly correlated
78 ZNF169 3 94.0 Moderately correlated
79 ZNF274 3 99.0 Highly correlated
80 ZNF519 3 19.6 Weakly correlated
81 ZNF547 3 74.0 Weakly correlated
82 ZNF557 3 15.2 Weakly correlated
83 ZNF671 3 94.0 Moderately correlated
84 ZNF695 3 28.9 Weakly correlated
85 ZNF707 3 74.0 Weakly correlated
86 ZIK1 2 87.0 Moderately correlated
87 ZNF124 2 43.0 Weakly correlated
88 ZNF184 2 99.0 Highly correlated
89 ZNF440 2 28.9 Weakly correlated
90 ZNF44 2 43.0 Weakly correlated
91 ZNF468 2 28.9 Weakly correlated
92 ZNF682 2 28.9 Weakly correlated
93 ZNF789 2 99.0 Highly correlated
94 ZNF799 2 43.0 Weakly correlated
95 ZFP14 1 99.0 Highly correlated
96 ZKSCAN5 1 160.0 Weakly correlated
97 ZNF157 1 99.0 Highly correlated
98 ZNF17 1 69.0 Weakly correlated
99 ZNF19 1 99.0 Highly correlated
100 ZNF202 1 160.0 Weakly correlated
101 ZNF230 1 28.9 Weakly correlated
102 ZNF282 1 319.0 Weakly correlated
103 ZNF283 1 99.0 Highly correlated
104 ZNF304 1 99.0 Highly correlated
105 ZNF334 1 99.0 Highly correlated
106 ZNF337 1 43.0 Weakly correlated
107 ZNF354B 1 99.0 Highly correlated
108 ZNF354C 1 99.0 Highly correlated
109 ZNF425 1 94.0 Moderately correlated
110 ZNF436 1 180.0 Weakly correlated
111 ZNF43 1 43.0 Weakly correlated
112 ZNF445 1 99.0 Highly correlated
113 ZNF480 1 43.0 Weakly correlated
114 ZNF510 1 99.0 Highly correlated
115 ZNF563 1 28.9 Weakly correlated
116 ZNF614 1 99.0 Highly correlated
117 ZNF675 1 8.6 Weakly correlated
118 ZNF684 1 99.0 Highly correlated
119 ZNF700 1 28.9 Weakly correlated
120 ZNF736 1 43.0 Weakly correlated
121 ZNF778 1 74.0 Weakly correlated
122 ZNF780A 1 43.0 Weakly correlated
123 ZNF7 1 99.0 Highly correlated
124 ZNF808 1 19.6 Weakly correlated
125 ZNF845 1 28.9 Weakly correlated
126 ZNF850 1 28.9 Weakly correlated
127 ZNF878 1 43.0 Weakly correlated
128 ZNF879 1 99.0 Highly correlated
129 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 47 87.0 Moderately correlated
2 ZNF382 41 99.0 Highly correlated
3 ZNF84 30 99.0 Highly correlated
4 ZNF248 25 99.0 Highly correlated
5 ZNF101 19 43.0 Weakly correlated
6 ZNF317 19 99.0 Highly correlated
7 ZNF81 18 99.0 Highly correlated
8 ZNF793 18 99.0 Highly correlated
9 ZNF558 16 99.0 Highly correlated
10 ZNF92 15 28.9 Weakly correlated
11 ZNF723 15 15.2 Weakly correlated
12 ZFP28 14 99.0 Highly correlated
13 ZNF680 14 28.9 Weakly correlated
14 ZNF263 11 180.0 Weakly correlated
15 ZNF534 11 19.6 Weakly correlated
16 ZNF28 9 28.9 Weakly correlated
17 ZNF485 9 94.0 Moderately correlated
18 ZNF251 8 94.0 Moderately correlated
19 ZFP69 8 99.0 Highly correlated
20 ZNF133 8 99.0 Highly correlated
21 ZNF479 8 6.4 Weakly correlated
22 ZNF10 7 99.0 Highly correlated
23 ZFP82 7 99.0 Highly correlated
24 ZNF140 6 99.0 Highly correlated
25 ZNF18 6 160.0 Weakly correlated
26 ZNF705B 6 28.9 Weakly correlated
27 ZNF136 6 74.0 Weakly correlated
28 ZNF354A 5 99.0 Highly correlated
29 ZNF75D 5 94.0 Moderately correlated
30 ZNF26 4 99.0 Highly correlated
31 ZNF701 4 28.9 Weakly correlated
32 ZNF585A 4 99.0 Highly correlated
33 ZNF8 4 99.0 Highly correlated
34 ZNF766 4 43.0 Weakly correlated
35 ZNF705D 4 28.9 Weakly correlated
36 ZNF486 4 8.6 Weakly correlated
37 ZNF490 4 43.0 Weakly correlated
38 ZNF264 3 99.0 Highly correlated
39 ZFP57 3 87.0 Moderately correlated
40 ZNF2 3 99.0 Highly correlated
41 ZNF287 3 99.0 Highly correlated
42 ZNF735 3 28.9 Weakly correlated
43 ZNF41 3 99.0 Highly correlated
44 ZNF160 2 74.0 Weakly correlated
45 ZIK1 2 87.0 Moderately correlated
46 ZNF394 2 99.0 Highly correlated
47 ZNF528 2 43.0 Weakly correlated
48 ZNF816 2 28.9 Weakly correlated
49 ZNF33A 2 99.0 Highly correlated
50 ZNF567 2 99.0 Highly correlated
51 ZNF554 2 99.0 Highly correlated
52 ZNF471 2 94.0 Moderately correlated
53 ZFP37 1 99.0 Highly correlated
54 ZNF506 1 28.9 Weakly correlated
55 ZFP14 1 99.0 Highly correlated
56 ZNF589 1 28.9 Weakly correlated
57 ZNF679 1 28.9 Weakly correlated
58 ZNF157 1 99.0 Highly correlated
59 ZNF202 1 160.0 Weakly correlated
60 ZNF175 1 94.0 Moderately correlated
61 ZNF429 1 28.9 Weakly correlated
62 ZNF480 1 43.0 Weakly correlated
63 ZNF671 1 94.0 Moderately correlated
64 ZNF7 1 99.0 Highly correlated
65 ZNF197 1 99.0 Highly correlated
66 ZNF324 1 99.0 Highly correlated
67 ZNF707 1 74.0 Weakly correlated
68 ZNF585B 1 99.0 Highly correlated
69 ZNF320 1 28.9 Weakly correlated
70 ZNF641 1 99.0 Highly correlated
71 ZNF736 1 43.0 Weakly correlated
72 ZNF792 1 94.0 Moderately correlated
73 ZNF257 1 0.0 Weakly correlated
74 ZNF563 1 28.9 Weakly correlated
75 ZNF610 1 28.9 Weakly correlated
76 ZNF44 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF140 99.0 Highly correlated
2 ZNF251 94.0 Moderately correlated
3 ZNF28 28.9 Weakly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF479 6.4 Weakly correlated
6 ZNF558 99.0 Highly correlated
7 ZNF680 28.9 Weakly correlated
8 ZNF705B 28.9 Weakly correlated
9 ZNF793 99.0 Highly correlated
10 ZNF84 99.0 Highly correlated
11 ZNF92 28.9 Weakly correlated