ZRdb KZFP & Repeats
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LINE_L1ME3A_3END

  • Name
    L1ME3A_3END
  • Repbase
    L1ME3A
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000297
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctcatatccagaatatataaagaactcctacaaatcaataagaaaaagacagacaacccaatagaaaaatgggcaaaagacttgaacaggcacttcacaaaagaggatatccaaatggccaataaacatatgaaaaggtgctcaacttcattagtcatcagggaaatgcaaattaaaaccacaatgngataccactacacacccaccagaatggctaaaatgaaaaagacagacaataccaagtgttggcgaggatgtggagcaaccggaactctcatacactgctggtgggagtgtaaattggtacaaccactttggaaaactgtttggcagtatctactaaagctgaacatatgcataccctatgacccagcaattccactcctaggtatatacccaacagaaatgcgtacatatgttcaccaaaagacatgtacaagaatgttcatagcagcactattcgtaatagccnnaaactggaaacnacccaaatgtccatcaacagtagaatggataaataaattgtggtatattcacacaatggaatactatacagcaatgagaatgaacgaactacaactacacgcaacaacatggatgaatctcacaaacataatgttgagcgaaagaagccagacacaaaagagtacatactgtatgattccatttatataaagttcaaaaacaggcaaaactaatctatggtgttagaagtcaggatagtggttacccttgggggggggtagtgactggaagggggcacgaggggggcttctggggtgctggtaatgttctgtttcttgatctgggtgctggttacacgggtgtgttcantttgtgaaaattcatcgagctgtacacttatgatttgtgcacttttctgtatgtatgttatacttcaataaaaagtttaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 774 99.0 Highly correlated
2 ZNF317 182 99.0 Highly correlated
3 ZIM3 167 87.0 Moderately correlated
4 ZNF766 160 43.0 Weakly correlated
5 ZNF140 131 99.0 Highly correlated
6 ZNF394 130 99.0 Highly correlated
7 ZNF263 107 180.0 Weakly correlated
8 ZNF92 97 28.9 Weakly correlated
9 ZFP37 81 99.0 Highly correlated
10 ZNF680 77 28.9 Weakly correlated
11 ZNF251 75 94.0 Moderately correlated
12 ZNF2 73 99.0 Highly correlated
13 ZNF558 71 99.0 Highly correlated
14 ZNF84 69 99.0 Highly correlated
15 ZNF18 68 160.0 Weakly correlated
16 ZNF705B 66 28.9 Weakly correlated
17 ZNF679 64 28.9 Weakly correlated
18 ZNF723 57 15.2 Weakly correlated
19 ZNF81 55 99.0 Highly correlated
20 ZFP28 53 99.0 Highly correlated
21 ZNF589 51 28.9 Weakly correlated
22 ZNF554 50 99.0 Highly correlated
23 ZNF486 49 8.6 Weakly correlated
24 ZKSCAN1 48 160.0 Weakly correlated
25 ZNF248 48 99.0 Highly correlated
26 ZNF705D 46 28.9 Weakly correlated
27 ZNF793 46 99.0 Highly correlated
28 ZNF101 42 43.0 Weakly correlated
29 ZNF175 40 94.0 Moderately correlated
30 ZNF534 40 19.6 Weakly correlated
31 ZKSCAN8 35 160.0 Weakly correlated
32 ZNF10 34 99.0 Highly correlated
33 ZNF28 32 28.9 Weakly correlated
34 ZNF479 32 6.4 Weakly correlated
35 ZNF324 31 99.0 Highly correlated
36 ZNF584 29 99.0 Highly correlated
37 ZNF133 28 99.0 Highly correlated
38 ZNF597 28 94.0 Moderately correlated
39 ZNF197 25 99.0 Highly correlated
40 ZNF585A 25 99.0 Highly correlated
41 ZNF257 24 0.0 Weakly correlated
42 ZNF8 24 99.0 Highly correlated
43 ZNF701 23 28.9 Weakly correlated
44 ZFP69B 22 99.0 Highly correlated
45 ZNF136 22 74.0 Weakly correlated
46 ZFP57 21 87.0 Moderately correlated
47 ZNF320 20 28.9 Weakly correlated
48 ZNF610 20 28.9 Weakly correlated
49 ZNF490 19 43.0 Weakly correlated
50 ZNF441 16 43.0 Weakly correlated
51 ZNF75D 16 94.0 Moderately correlated
52 ZNF182 15 99.0 Highly correlated
53 ZNF264 14 99.0 Highly correlated
54 ZNF274 14 99.0 Highly correlated
55 ZNF160 13 74.0 Weakly correlated
56 ZNF528 13 43.0 Weakly correlated
57 ZNF567 13 99.0 Highly correlated
58 ZNF429 12 28.9 Weakly correlated
59 ZNF792 12 94.0 Moderately correlated
60 ZNF549 11 87.0 Moderately correlated
61 ZNF485 10 94.0 Moderately correlated
62 ZNF547 10 74.0 Weakly correlated
63 ZFP69 9 99.0 Highly correlated
64 ZNF26 9 99.0 Highly correlated
65 ZNF41 9 99.0 Highly correlated
66 ZNF735 9 28.9 Weakly correlated
67 ZFP30 8 99.0 Highly correlated
68 ZFP82 8 99.0 Highly correlated
69 ZNF778 8 74.0 Weakly correlated
70 ZNF879 8 99.0 Highly correlated
71 ZFP14 7 99.0 Highly correlated
72 ZNF471 7 94.0 Moderately correlated
73 ZNF850 7 28.9 Weakly correlated
74 ZNF169 6 94.0 Moderately correlated
75 ZNF354A 6 99.0 Highly correlated
76 ZNF506 6 28.9 Weakly correlated
77 ZNF519 6 19.6 Weakly correlated
78 ZNF585B 6 99.0 Highly correlated
79 ZNF682 6 28.9 Weakly correlated
80 ZKSCAN5 5 160.0 Weakly correlated
81 ZNF202 5 160.0 Weakly correlated
82 ZNF284 5 43.0 Weakly correlated
83 ZNF334 5 99.0 Highly correlated
84 ZNF347 5 43.0 Weakly correlated
85 ZNF707 5 74.0 Weakly correlated
86 ZNF7 5 99.0 Highly correlated
87 ZNF141 4 43.0 Weakly correlated
88 ZNF350 4 99.0 Highly correlated
89 ZNF425 4 94.0 Moderately correlated
90 ZNF440 4 28.9 Weakly correlated
91 ZNF563 4 28.9 Weakly correlated
92 ZNF641 4 99.0 Highly correlated
93 ZNF786 4 99.0 Highly correlated
94 ZNF17 3 69.0 Weakly correlated
95 ZNF287 3 99.0 Highly correlated
96 ZNF331 3 94.0 Moderately correlated
97 ZNF445 3 99.0 Highly correlated
98 ZNF454 3 99.0 Highly correlated
99 ZNF525 3 19.6 Weakly correlated
100 ZNF671 3 94.0 Moderately correlated
101 ZNF695 3 28.9 Weakly correlated
102 ZNF716 3 19.6 Weakly correlated
103 ZNF823 3 43.0 Weakly correlated
104 ZNF93 3 8.6 Weakly correlated
105 ZNF100 2 28.9 Weakly correlated
106 ZNF184 2 99.0 Highly correlated
107 ZNF230 2 28.9 Weakly correlated
108 ZNF253 2 19.6 Weakly correlated
109 ZNF273 2 28.9 Weakly correlated
110 ZNF282 2 319.0 Weakly correlated
111 ZNF30 2 94.0 Moderately correlated
112 ZNF33A 2 99.0 Highly correlated
113 ZNF436 2 180.0 Weakly correlated
114 ZNF43 2 43.0 Weakly correlated
115 ZNF468 2 28.9 Weakly correlated
116 ZNF510 2 99.0 Highly correlated
117 ZNF559 2 74.0 Weakly correlated
118 ZNF583 2 99.0 Highly correlated
119 ZNF605 2 99.0 Highly correlated
120 ZNF611 2 19.6 Weakly correlated
121 ZNF667 2 99.0 Highly correlated
122 ZNF674 2 99.0 Highly correlated
123 ZNF677 2 99.0 Highly correlated
124 ZNF700 2 28.9 Weakly correlated
125 ZNF75A 2 94.0 Moderately correlated
126 ZNF780A 2 43.0 Weakly correlated
127 ZNF816 2 28.9 Weakly correlated
128 ZNF878 2 43.0 Weakly correlated
129 PRDM9 1 0.0 Weakly correlated
130 RBAK 1 99.0 Highly correlated
131 ZNF124 1 43.0 Weakly correlated
132 ZNF12 1 99.0 Highly correlated
133 ZNF135 1 94.0 Moderately correlated
134 ZNF189 1 99.0 Highly correlated
135 ZNF222 1 43.0 Weakly correlated
136 ZNF224 1 69.0 Weakly correlated
137 ZNF250 1 99.0 Highly correlated
138 ZNF283 1 99.0 Highly correlated
139 ZNF343 1 74.0 Weakly correlated
140 ZNF354C 1 99.0 Highly correlated
141 ZNF44 1 43.0 Weakly correlated
142 ZNF484 1 99.0 Highly correlated
143 ZNF529 1 99.0 Highly correlated
144 ZNF530 1 28.9 Weakly correlated
145 ZNF552 1 28.9 Weakly correlated
146 ZNF561 1 43.0 Weakly correlated
147 ZNF573 1 94.0 Moderately correlated
148 ZNF586 1 43.0 Weakly correlated
149 ZNF614 1 99.0 Highly correlated
150 ZNF675 1 8.6 Weakly correlated
151 ZNF730 1 19.6 Weakly correlated
152 ZNF749 1 28.9 Weakly correlated
153 ZNF777 1 319.0 Weakly correlated
154 ZNF789 1 99.0 Highly correlated
155 ZNF799 1 43.0 Weakly correlated
156 ZNF808 1 19.6 Weakly correlated
157 ZNF813 1 28.9 Weakly correlated
158 ZNF845 1 28.9 Weakly correlated
159 ZNF85 1 28.9 Weakly correlated
160 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 93 87.0 Moderately correlated
2 ZNF382 78 99.0 Highly correlated
3 ZNF84 62 99.0 Highly correlated
4 ZNF81 50 99.0 Highly correlated
5 ZNF251 49 94.0 Moderately correlated
6 ZNF317 46 99.0 Highly correlated
7 ZNF92 40 28.9 Weakly correlated
8 ZNF723 36 15.2 Weakly correlated
9 ZNF248 35 99.0 Highly correlated
10 ZNF10 31 99.0 Highly correlated
11 ZNF140 29 99.0 Highly correlated
12 ZFP28 22 99.0 Highly correlated
13 ZNF534 22 19.6 Weakly correlated
14 ZNF793 22 99.0 Highly correlated
15 ZNF263 20 180.0 Weakly correlated
16 ZNF680 19 28.9 Weakly correlated
17 ZNF101 17 43.0 Weakly correlated
18 ZNF133 15 99.0 Highly correlated
19 ZNF8 15 99.0 Highly correlated
20 ZNF766 15 43.0 Weakly correlated
21 ZNF558 14 99.0 Highly correlated
22 ZNF136 13 74.0 Weakly correlated
23 ZNF479 13 6.4 Weakly correlated
24 ZNF28 13 28.9 Weakly correlated
25 ZNF585A 13 99.0 Highly correlated
26 ZNF705D 11 28.9 Weakly correlated
27 ZNF264 10 99.0 Highly correlated
28 ZNF18 10 160.0 Weakly correlated
29 ZNF490 9 43.0 Weakly correlated
30 ZNF567 9 99.0 Highly correlated
31 ZFP69 8 99.0 Highly correlated
32 ZNF485 8 94.0 Moderately correlated
33 ZFP14 7 99.0 Highly correlated
34 ZFP57 7 87.0 Moderately correlated
35 ZFP82 7 99.0 Highly correlated
36 ZNF26 7 99.0 Highly correlated
37 ZNF320 7 28.9 Weakly correlated
38 ZNF554 7 99.0 Highly correlated
39 ZNF705B 7 28.9 Weakly correlated
40 ZNF597 6 94.0 Moderately correlated
41 ZNF701 6 28.9 Weakly correlated
42 ZNF160 6 74.0 Weakly correlated
43 ZNF879 6 99.0 Highly correlated
44 ZNF7 5 99.0 Highly correlated
45 ZNF257 5 0.0 Weakly correlated
46 ZNF75D 5 94.0 Moderately correlated
47 ZNF735 5 28.9 Weakly correlated
48 ZNF471 4 94.0 Moderately correlated
49 ZNF202 4 160.0 Weakly correlated
50 ZNF354A 4 99.0 Highly correlated
51 ZNF324 4 99.0 Highly correlated
52 ZNF175 4 94.0 Moderately correlated
53 ZNF41 4 99.0 Highly correlated
54 ZNF549 4 87.0 Moderately correlated
55 ZNF350 4 99.0 Highly correlated
56 ZKSCAN1 3 160.0 Weakly correlated
57 ZNF287 3 99.0 Highly correlated
58 ZNF589 3 28.9 Weakly correlated
59 ZNF792 3 94.0 Moderately correlated
60 ZNF850 3 28.9 Weakly correlated
61 ZNF197 3 99.0 Highly correlated
62 ZNF394 3 99.0 Highly correlated
63 ZNF347 3 43.0 Weakly correlated
64 ZNF506 3 28.9 Weakly correlated
65 ZNF334 3 99.0 Highly correlated
66 ZNF679 3 28.9 Weakly correlated
67 ZFP37 2 99.0 Highly correlated
68 ZKSCAN8 2 160.0 Weakly correlated
69 ZNF141 2 43.0 Weakly correlated
70 ZNF169 2 94.0 Moderately correlated
71 ZNF528 2 43.0 Weakly correlated
72 ZNF584 2 99.0 Highly correlated
73 ZNF605 2 99.0 Highly correlated
74 ZNF778 2 74.0 Weakly correlated
75 ZNF585B 2 99.0 Highly correlated
76 ZNF429 2 28.9 Weakly correlated
77 ZNF677 2 99.0 Highly correlated
78 ZKSCAN5 1 160.0 Weakly correlated
79 ZNF486 1 8.6 Weakly correlated
80 ZNF530 1 28.9 Weakly correlated
81 ZNF563 1 28.9 Weakly correlated
82 ZNF671 1 94.0 Moderately correlated
83 ZNF610 1 28.9 Weakly correlated
84 ZNF682 1 28.9 Weakly correlated
85 ZNF716 1 19.6 Weakly correlated
86 ZNF2 1 99.0 Highly correlated
87 ZNF561 1 43.0 Weakly correlated
88 ZNF273 1 28.9 Weakly correlated
89 ZNF440 1 28.9 Weakly correlated
90 ZNF583 1 99.0 Highly correlated
91 ZNF282 1 319.0 Weakly correlated
92 ZNF525 1 19.6 Weakly correlated
93 ZNF749 1 28.9 Weakly correlated
94 ZNF777 1 319.0 Weakly correlated
95 ZNF30 1 94.0 Moderately correlated
96 ZNF707 1 74.0 Weakly correlated
97 ZNF780A 1 43.0 Weakly correlated
98 ZNF33A 1 99.0 Highly correlated
99 ZNF343 1 74.0 Weakly correlated
100 ZNF695 1 28.9 Weakly correlated
101 ZNF789 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP14 99.0 Highly correlated
2 ZFP57 87.0 Moderately correlated
3 ZNF251 94.0 Moderately correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF28 28.9 Weakly correlated
6 ZNF317 99.0 Highly correlated
7 ZNF479 6.4 Weakly correlated
8 ZNF554 99.0 Highly correlated
9 ZNF567 99.0 Highly correlated
10 ZNF597 94.0 Moderately correlated
11 ZNF680 28.9 Weakly correlated
12 ZNF793 99.0 Highly correlated
13 ZNF84 99.0 Highly correlated
14 ZNF92 28.9 Weakly correlated