ZRdb KZFP & Repeats
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LINE_L1ME2_3END

  • Name
    L1ME2_3END
  • Repbase
    L1ME2
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000294
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cttgtatccagaatatataaagaactcctacaactcaataataaaaagacaaacaacccaattaaaaaatgggcaaaagacttgaacagacacttcacaaaagaagatatacgaatggccaataagcacatgaaaaggtgctcaacatcattagtcatcagggaaatgcaaattaaaaccacaatgagataccactncacacccactagaatggctaaaattaaaaagactgacaataccaaatgttggcgaggatgtggagcaactggaactctcatacattgctggtgggagtgtaaaatggtacaaccactttggaaaacngtttggcagtttcttataaagttaaacatacacctaccctatgacccagcaattccactcctaggtatttacccaagagaaatgaaaacatatgtccacaaaaagacttgtacangaatgttcatagcagctttattcataatagcccaaaactggaaacaacccaaatgtccatcaacaggngaatggataaacaaattgtggtatattcatacaatggaatactactcagcaataaaaaggaacgaactactgatacacgcaacaacatggatgaatctcaaaaacattatgctgagcgaaagaagccagacacaaaagagtacatactgtatgattccatttatatgaagttctagaacaggcaaaactaatctatggtgatagaaatcagaacagtggttgcctccgggggggtgggggattgactggaaaggggcacgagggaactttctggggtgatggaaatgttctatatcttgattggggtggtggttacacgggtgtatacatttgtcaaaactcatcgaactgtacacttaagatctgtgcattttattgtatgtaaattatacctcaanaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 743 99.0 Highly correlated
2 ZNF317 261 99.0 Highly correlated
3 ZNF394 137 99.0 Highly correlated
4 ZNF680 114 28.9 Weakly correlated
5 ZIM3 112 87.0 Moderately correlated
6 ZNF766 95 43.0 Weakly correlated
7 ZFP28 88 99.0 Highly correlated
8 ZNF251 85 94.0 Moderately correlated
9 ZNF140 78 99.0 Highly correlated
10 ZNF248 77 99.0 Highly correlated
11 ZNF8 75 99.0 Highly correlated
12 ZNF263 74 180.0 Weakly correlated
13 ZNF2 70 99.0 Highly correlated
14 ZNF558 64 99.0 Highly correlated
15 ZNF723 64 15.2 Weakly correlated
16 ZNF679 61 28.9 Weakly correlated
17 ZFP37 60 99.0 Highly correlated
18 ZNF486 48 8.6 Weakly correlated
19 ZNF705B 47 28.9 Weakly correlated
20 ZNF92 47 28.9 Weakly correlated
21 ZNF101 44 43.0 Weakly correlated
22 ZNF610 39 28.9 Weakly correlated
23 ZNF324 38 99.0 Highly correlated
24 ZNF18 36 160.0 Weakly correlated
25 ZNF793 36 99.0 Highly correlated
26 ZFP69B 34 99.0 Highly correlated
27 ZNF81 34 99.0 Highly correlated
28 ZNF705D 31 28.9 Weakly correlated
29 ZKSCAN1 30 160.0 Weakly correlated
30 ZNF133 30 99.0 Highly correlated
31 ZNF175 30 94.0 Moderately correlated
32 ZNF479 29 6.4 Weakly correlated
33 ZKSCAN8 28 160.0 Weakly correlated
34 ZNF589 28 28.9 Weakly correlated
35 ZNF84 28 99.0 Highly correlated
36 ZNF182 27 99.0 Highly correlated
37 ZNF534 27 19.6 Weakly correlated
38 ZNF257 26 0.0 Weakly correlated
39 ZNF567 25 99.0 Highly correlated
40 ZNF136 22 74.0 Weakly correlated
41 ZNF585B 21 99.0 Highly correlated
42 ZNF490 20 43.0 Weakly correlated
43 ZNF554 19 99.0 Highly correlated
44 ZNF735 19 28.9 Weakly correlated
45 ZNF26 18 99.0 Highly correlated
46 ZNF274 18 99.0 Highly correlated
47 ZNF354A 17 99.0 Highly correlated
48 ZNF10 15 99.0 Highly correlated
49 ZNF597 15 94.0 Moderately correlated
50 ZNF197 14 99.0 Highly correlated
51 ZNF320 14 28.9 Weakly correlated
52 ZNF701 14 28.9 Weakly correlated
53 ZNF584 13 99.0 Highly correlated
54 ZFP69 11 99.0 Highly correlated
55 ZNF441 11 43.0 Weakly correlated
56 ZNF471 11 94.0 Moderately correlated
57 ZNF485 11 94.0 Moderately correlated
58 ZNF506 11 28.9 Weakly correlated
59 ZNF184 10 99.0 Highly correlated
60 ZNF284 10 43.0 Weakly correlated
61 ZNF287 10 99.0 Highly correlated
62 ZNF440 10 28.9 Weakly correlated
63 ZNF160 9 74.0 Weakly correlated
64 ZNF429 9 28.9 Weakly correlated
65 ZFP14 8 99.0 Highly correlated
66 ZNF202 8 160.0 Weakly correlated
67 ZNF350 8 99.0 Highly correlated
68 ZNF528 8 43.0 Weakly correlated
69 ZNF547 8 74.0 Weakly correlated
70 ZNF677 8 99.0 Highly correlated
71 ZNF682 8 28.9 Weakly correlated
72 ZNF519 7 19.6 Weakly correlated
73 ZNF75D 7 94.0 Moderately correlated
74 ZNF792 7 94.0 Moderately correlated
75 ZFP57 6 87.0 Moderately correlated
76 ZNF264 6 99.0 Highly correlated
77 ZNF28 6 28.9 Weakly correlated
78 ZNF331 6 94.0 Moderately correlated
79 ZNF44 6 43.0 Weakly correlated
80 ZNF549 6 87.0 Moderately correlated
81 ZNF585A 6 99.0 Highly correlated
82 ZNF141 5 43.0 Weakly correlated
83 ZNF695 5 28.9 Weakly correlated
84 ZNF334 4 99.0 Highly correlated
85 ZNF573 4 94.0 Moderately correlated
86 ZNF671 4 94.0 Moderately correlated
87 ZNF707 4 74.0 Weakly correlated
88 ZNF786 4 99.0 Highly correlated
89 ZNF7 4 99.0 Highly correlated
90 ZNF879 4 99.0 Highly correlated
91 ZFP30 3 99.0 Highly correlated
92 ZNF169 3 94.0 Moderately correlated
93 ZNF583 3 99.0 Highly correlated
94 ZNF586 3 43.0 Weakly correlated
95 ZNF641 3 99.0 Highly correlated
96 ZNF75A 3 94.0 Moderately correlated
97 ZNF778 3 74.0 Weakly correlated
98 ZNF845 3 28.9 Weakly correlated
99 ZFP82 2 99.0 Highly correlated
100 ZNF135 2 94.0 Moderately correlated
101 ZNF230 2 28.9 Weakly correlated
102 ZNF282 2 319.0 Weakly correlated
103 ZNF425 2 94.0 Moderately correlated
104 ZNF43 2 43.0 Weakly correlated
105 ZNF468 2 28.9 Weakly correlated
106 ZNF557 2 15.2 Weakly correlated
107 ZNF559 2 74.0 Weakly correlated
108 ZNF560 2 43.0 Weakly correlated
109 ZNF563 2 28.9 Weakly correlated
110 ZNF570 2 99.0 Highly correlated
111 ZNF699 2 99.0 Highly correlated
112 ZNF808 2 19.6 Weakly correlated
113 ZNF878 2 43.0 Weakly correlated
114 ZIK1 1 87.0 Moderately correlated
115 ZKSCAN5 1 160.0 Weakly correlated
116 ZNF154 1 94.0 Moderately correlated
117 ZNF17 1 69.0 Weakly correlated
118 ZNF211 1 94.0 Moderately correlated
119 ZNF225 1 74.0 Weakly correlated
120 ZNF235 1 99.0 Highly correlated
121 ZNF254 1 43.0 Weakly correlated
122 ZNF304 1 99.0 Highly correlated
123 ZNF30 1 94.0 Moderately correlated
124 ZNF354B 1 99.0 Highly correlated
125 ZNF41 1 99.0 Highly correlated
126 ZNF420 1 94.0 Moderately correlated
127 ZNF432 1 99.0 Highly correlated
128 ZNF433 1 43.0 Weakly correlated
129 ZNF442 1 43.0 Weakly correlated
130 ZNF445 1 99.0 Highly correlated
131 ZNF454 1 99.0 Highly correlated
132 ZNF45 1 99.0 Highly correlated
133 ZNF480 1 43.0 Weakly correlated
134 ZNF548 1 94.0 Moderately correlated
135 ZNF561 1 43.0 Weakly correlated
136 ZNF562 1 28.9 Weakly correlated
137 ZNF577 1 94.0 Moderately correlated
138 ZNF607 1 43.0 Weakly correlated
139 ZNF611 1 19.6 Weakly correlated
140 ZNF627 1 74.0 Weakly correlated
141 ZNF630 1 94.0 Moderately correlated
142 ZNF674 1 99.0 Highly correlated
143 ZNF675 1 8.6 Weakly correlated
144 ZNF689 1 99.0 Highly correlated
145 ZNF700 1 28.9 Weakly correlated
146 ZNF727 1 19.6 Weakly correlated
147 ZNF749 1 28.9 Weakly correlated
148 ZNF761 1 19.6 Weakly correlated
149 ZNF780A 1 43.0 Weakly correlated
150 ZNF813 1 28.9 Weakly correlated
151 ZNF816 1 28.9 Weakly correlated
152 ZNF823 1 43.0 Weakly correlated
153 ZNF846 1 74.0 Weakly correlated
154 ZNF91 1 6.0 Weakly correlated
155 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 87 99.0 Highly correlated
2 ZNF248 61 99.0 Highly correlated
3 ZIM3 54 87.0 Moderately correlated
4 ZNF8 53 99.0 Highly correlated
5 ZNF251 44 94.0 Moderately correlated
6 ZNF317 43 99.0 Highly correlated
7 ZFP28 39 99.0 Highly correlated
8 ZNF81 32 99.0 Highly correlated
9 ZNF723 31 15.2 Weakly correlated
10 ZNF680 27 28.9 Weakly correlated
11 ZNF84 21 99.0 Highly correlated
12 ZNF101 18 43.0 Weakly correlated
13 ZNF133 18 99.0 Highly correlated
14 ZNF567 18 99.0 Highly correlated
15 ZNF793 17 99.0 Highly correlated
16 ZNF140 15 99.0 Highly correlated
17 ZNF490 14 43.0 Weakly correlated
18 ZNF92 14 28.9 Weakly correlated
19 ZNF534 14 19.6 Weakly correlated
20 ZNF354A 14 99.0 Highly correlated
21 ZNF766 13 43.0 Weakly correlated
22 ZNF558 13 99.0 Highly correlated
23 ZNF10 13 99.0 Highly correlated
24 ZNF735 13 28.9 Weakly correlated
25 ZNF26 12 99.0 Highly correlated
26 ZNF479 11 6.4 Weakly correlated
27 ZNF136 10 74.0 Weakly correlated
28 ZNF263 9 180.0 Weakly correlated
29 ZNF705B 8 28.9 Weakly correlated
30 ZFP69 8 99.0 Highly correlated
31 ZNF705D 8 28.9 Weakly correlated
32 ZNF677 7 99.0 Highly correlated
33 ZNF18 7 160.0 Weakly correlated
34 ZNF160 7 74.0 Weakly correlated
35 ZFP14 7 99.0 Highly correlated
36 ZNF585B 6 99.0 Highly correlated
37 ZNF701 6 28.9 Weakly correlated
38 ZNF287 6 99.0 Highly correlated
39 ZNF440 6 28.9 Weakly correlated
40 ZNF320 5 28.9 Weakly correlated
41 ZNF2 5 99.0 Highly correlated
42 ZNF471 5 94.0 Moderately correlated
43 ZNF485 4 94.0 Moderately correlated
44 ZNF324 4 99.0 Highly correlated
45 ZNF7 4 99.0 Highly correlated
46 ZNF486 4 8.6 Weakly correlated
47 ZNF585A 4 99.0 Highly correlated
48 ZKSCAN1 3 160.0 Weakly correlated
49 ZNF350 3 99.0 Highly correlated
50 ZNF264 3 99.0 Highly correlated
51 ZNF44 3 43.0 Weakly correlated
52 ZNF257 3 0.0 Weakly correlated
53 ZNF202 3 160.0 Weakly correlated
54 ZNF141 3 43.0 Weakly correlated
55 ZNF75D 3 94.0 Moderately correlated
56 ZNF506 3 28.9 Weakly correlated
57 ZNF28 3 28.9 Weakly correlated
58 ZNF679 3 28.9 Weakly correlated
59 ZNF197 2 99.0 Highly correlated
60 ZNF554 2 99.0 Highly correlated
61 ZKSCAN8 2 160.0 Weakly correlated
62 ZNF792 2 94.0 Moderately correlated
63 ZNF641 2 99.0 Highly correlated
64 ZFP57 2 87.0 Moderately correlated
65 ZNF394 2 99.0 Highly correlated
66 ZNF573 2 94.0 Moderately correlated
67 ZNF597 2 94.0 Moderately correlated
68 ZNF468 2 28.9 Weakly correlated
69 ZNF175 2 94.0 Moderately correlated
70 ZKSCAN5 2 160.0 Weakly correlated
71 ZNF331 2 94.0 Moderately correlated
72 ZNF675 1 8.6 Weakly correlated
73 ZNF780A 1 43.0 Weakly correlated
74 ZNF671 1 94.0 Moderately correlated
75 ZNF154 1 94.0 Moderately correlated
76 ZNF879 1 99.0 Highly correlated
77 ZNF334 1 99.0 Highly correlated
78 ZNF211 1 94.0 Moderately correlated
79 ZNF230 1 28.9 Weakly correlated
80 ZFP37 1 99.0 Highly correlated
81 ZNF429 1 28.9 Weakly correlated
82 ZFP82 1 99.0 Highly correlated
83 ZIK1 1 87.0 Moderately correlated
84 ZNF583 1 99.0 Highly correlated
85 ZNF354B 1 99.0 Highly correlated
86 ZNF43 1 43.0 Weakly correlated
87 ZNF695 1 28.9 Weakly correlated
88 ZNF169 1 94.0 Moderately correlated
89 ZNF432 1 99.0 Highly correlated
90 ZNF45 1 99.0 Highly correlated
91 ZFP69B 1 99.0 Highly correlated
92 ZNF547 1 74.0 Weakly correlated
93 ZNF778 1 74.0 Weakly correlated
94 ZNF674 1 99.0 Highly correlated
95 ZNF584 1 99.0 Highly correlated
96 ZNF433 1 43.0 Weakly correlated
97 ZNF225 1 74.0 Weakly correlated
98 ZNF610 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP14 99.0 Highly correlated
2 ZNF248 99.0 Highly correlated
3 ZNF251 94.0 Moderately correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF317 99.0 Highly correlated
6 ZNF479 6.4 Weakly correlated
7 ZNF567 99.0 Highly correlated
8 ZNF585B 99.0 Highly correlated
9 ZNF680 28.9 Weakly correlated
10 ZNF701 28.9 Weakly correlated
11 ZNF793 99.0 Highly correlated
12 ZNF84 99.0 Highly correlated
13 ZNF92 28.9 Weakly correlated