ZRdb KZFP & Repeats
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LINE_L1ME2Z_3END

  • Name
    L1ME2Z_3END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000295
Description :

L1ME2z_3end has an extended tail (277 bp after pos 919); otherwise thisis highly similar to L1ME2_3end.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctggtatccaggatatataaagaactcctacaactcaataataaaaagacaaacaacccaattaaaaaatgggcaaaagatttgaacagacacttcacaaaggaagatatacgaatggccaataagcacatgaaaaagtgctcaacatcattagtcatcagggaaatgcaaattaaaaccacaatgagataccactacacacccaccagaatggctaaaattaaaaagactgacaacaccaaatgttggcgaggatgtggagcaaccggaactctcatacattgttggtgggagtgtaaaatggtacaaccactttggaaaaaggtctggcagtttcttataaaactaaacatacacctaccctatgacccagcaattccactcctaggtatttacccaagagaaatgaaaacatatgtccacaaaaagacttgtacaagaatgttcatagcagctttattcataatagccaaaaactggaaacagcccaggtgtccatcaacaggagaatggataaacaaactgtggtatattcatacaatggaatactactcagcaataaaaaggaacgaactactgatacacgcaacaacatggatgaatctcaaaaacattatgctgagtgaaagaagccttacacaaaagagtacatactgtatgattccatttatatgaagttctagaacaggcaaaactaatctatggtgaaaaaaatcagaacagtggttgcctctggggggtgggggcggggattgactgggaaggggcatgagggaactttctggggtgatggtaatgttctatatcttgataggggtttgggttacacaggtgtatgcatttgtcaaaactcatcgaatgtacacttaagatttgtgcatttcattgtatgtaaattttacctcaaaaaaaaactgtaaacaaatattgaactctagttaatgatatgcatgctgaagtatttagggggaagtgtactgatgtctgcaacttactttgaaatgcatcaaaaaataagatggattgatggatggatagagggatggatagatggatagatatgtgataaagcaagtatagtaaaatgttaatngtagaatctaggtggtgggtatatgggtgttcactgtaaaattctttcaacttttctgtatgtttgaaaattttcataataaaatgttgggaaaataa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 394 99.0 Highly correlated
2 ZNF394 80 99.0 Highly correlated
3 ZIM3 78 87.0 Moderately correlated
4 ZNF317 77 99.0 Highly correlated
5 ZNF766 60 43.0 Weakly correlated
6 ZNF18 51 160.0 Weakly correlated
7 ZNF140 50 99.0 Highly correlated
8 ZNF263 44 180.0 Weakly correlated
9 ZNF680 43 28.9 Weakly correlated
10 ZFP37 35 99.0 Highly correlated
11 ZNF2 35 99.0 Highly correlated
12 ZNF705B 30 28.9 Weakly correlated
13 ZNF558 29 99.0 Highly correlated
14 ZNF723 29 15.2 Weakly correlated
15 ZNF101 28 43.0 Weakly correlated
16 ZNF248 28 99.0 Highly correlated
17 ZNF175 27 94.0 Moderately correlated
18 ZNF251 25 94.0 Moderately correlated
19 ZNF92 25 28.9 Weakly correlated
20 ZKSCAN1 23 160.0 Weakly correlated
21 ZNF8 23 99.0 Highly correlated
22 ZNF705D 22 28.9 Weakly correlated
23 ZNF324 20 99.0 Highly correlated
24 ZNF589 19 28.9 Weakly correlated
25 ZNF534 18 19.6 Weakly correlated
26 ZNF610 18 28.9 Weakly correlated
27 ZNF133 17 99.0 Highly correlated
28 ZNF486 17 8.6 Weakly correlated
29 ZNF679 17 28.9 Weakly correlated
30 ZFP69B 16 99.0 Highly correlated
31 ZNF257 16 0.0 Weakly correlated
32 ZNF479 16 6.4 Weakly correlated
33 ZNF84 16 99.0 Highly correlated
34 ZFP28 15 99.0 Highly correlated
35 ZNF707 15 74.0 Weakly correlated
36 ZNF197 14 99.0 Highly correlated
37 ZNF490 14 43.0 Weakly correlated
38 ZNF701 13 28.9 Weakly correlated
39 ZNF10 12 99.0 Highly correlated
40 ZNF202 12 160.0 Weakly correlated
41 ZNF584 12 99.0 Highly correlated
42 ZFP57 11 87.0 Moderately correlated
43 ZNF793 10 99.0 Highly correlated
44 ZKSCAN8 9 160.0 Weakly correlated
45 ZNF136 9 74.0 Weakly correlated
46 ZNF182 9 99.0 Highly correlated
47 ZNF354A 9 99.0 Highly correlated
48 ZNF441 9 43.0 Weakly correlated
49 ZNF26 8 99.0 Highly correlated
50 ZNF347 8 43.0 Weakly correlated
51 ZNF506 8 28.9 Weakly correlated
52 ZNF549 8 87.0 Moderately correlated
53 ZNF81 8 99.0 Highly correlated
54 ZNF160 7 74.0 Weakly correlated
55 ZNF554 7 99.0 Highly correlated
56 ZNF597 7 94.0 Moderately correlated
57 ZFP14 6 99.0 Highly correlated
58 ZNF354C 6 99.0 Highly correlated
59 ZNF547 6 74.0 Weakly correlated
60 ZNF585B 6 99.0 Highly correlated
61 ZFP30 5 99.0 Highly correlated
62 ZNF264 5 99.0 Highly correlated
63 ZNF320 5 28.9 Weakly correlated
64 ZNF485 5 94.0 Moderately correlated
65 ZNF519 5 19.6 Weakly correlated
66 ZNF567 5 99.0 Highly correlated
67 ZNF274 4 99.0 Highly correlated
68 ZNF641 4 99.0 Highly correlated
69 ZNF671 4 94.0 Moderately correlated
70 ZNF677 4 99.0 Highly correlated
71 ZNF75D 4 94.0 Moderately correlated
72 ZNF778 4 74.0 Weakly correlated
73 ZNF792 4 94.0 Moderately correlated
74 ZNF184 3 99.0 Highly correlated
75 ZNF284 3 43.0 Weakly correlated
76 ZNF287 3 99.0 Highly correlated
77 ZNF471 3 94.0 Moderately correlated
78 ZNF735 3 28.9 Weakly correlated
79 ZNF823 3 43.0 Weakly correlated
80 ZNF93 3 8.6 Weakly correlated
81 ZNF169 2 94.0 Moderately correlated
82 ZNF282 2 319.0 Weakly correlated
83 ZNF333 2 99.0 Highly correlated
84 ZNF425 2 94.0 Moderately correlated
85 ZNF429 2 28.9 Weakly correlated
86 ZNF487 2 28.9 Weakly correlated
87 ZNF528 2 43.0 Weakly correlated
88 ZNF565 2 99.0 Highly correlated
89 ZNF585A 2 99.0 Highly correlated
90 ZNF658 2 99.0 Highly correlated
91 ZNF682 2 28.9 Weakly correlated
92 ZNF749 2 28.9 Weakly correlated
93 ZNF786 2 99.0 Highly correlated
94 ZFP69 1 99.0 Highly correlated
95 ZFP82 1 99.0 Highly correlated
96 ZNF124 1 43.0 Weakly correlated
97 ZNF135 1 94.0 Moderately correlated
98 ZNF180 1 99.0 Highly correlated
99 ZNF334 1 99.0 Highly correlated
100 ZNF418 1 43.0 Weakly correlated
101 ZNF41 1 99.0 Highly correlated
102 ZNF432 1 99.0 Highly correlated
103 ZNF440 1 28.9 Weakly correlated
104 ZNF445 1 99.0 Highly correlated
105 ZNF454 1 99.0 Highly correlated
106 ZNF45 1 99.0 Highly correlated
107 ZNF480 1 43.0 Weakly correlated
108 ZNF557 1 15.2 Weakly correlated
109 ZNF563 1 28.9 Weakly correlated
110 ZNF573 1 94.0 Moderately correlated
111 ZNF586 1 43.0 Weakly correlated
112 ZNF605 1 99.0 Highly correlated
113 ZNF611 1 19.6 Weakly correlated
114 ZNF613 1 99.0 Highly correlated
115 ZNF684 1 99.0 Highly correlated
116 ZNF736 1 43.0 Weakly correlated
117 ZNF7 1 99.0 Highly correlated
118 ZNF808 1 19.6 Weakly correlated
119 ZNF878 1 43.0 Weakly correlated
120 ZNF879 1 99.0 Highly correlated
121 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 43 87.0 Moderately correlated
2 ZNF382 39 99.0 Highly correlated
3 ZNF248 20 99.0 Highly correlated
4 ZNF723 20 15.2 Weakly correlated
5 ZNF251 16 94.0 Moderately correlated
6 ZNF8 13 99.0 Highly correlated
7 ZNF140 13 99.0 Highly correlated
8 ZNF101 13 43.0 Weakly correlated
9 ZNF10 12 99.0 Highly correlated
10 ZNF317 12 99.0 Highly correlated
11 ZNF84 12 99.0 Highly correlated
12 ZNF133 11 99.0 Highly correlated
13 ZNF479 10 6.4 Weakly correlated
14 ZNF534 10 19.6 Weakly correlated
15 ZNF92 9 28.9 Weakly correlated
16 ZNF490 9 43.0 Weakly correlated
17 ZNF81 9 99.0 Highly correlated
18 ZNF558 8 99.0 Highly correlated
19 ZNF347 8 43.0 Weakly correlated
20 ZNF680 7 28.9 Weakly correlated
21 ZNF354A 7 99.0 Highly correlated
22 ZNF705B 7 28.9 Weakly correlated
23 ZNF136 6 74.0 Weakly correlated
24 ZNF766 6 43.0 Weakly correlated
25 ZNF202 6 160.0 Weakly correlated
26 ZFP28 6 99.0 Highly correlated
27 ZNF160 5 74.0 Weakly correlated
28 ZNF485 5 94.0 Moderately correlated
29 ZFP14 5 99.0 Highly correlated
30 ZNF354C 4 99.0 Highly correlated
31 ZNF18 4 160.0 Weakly correlated
32 ZNF26 4 99.0 Highly correlated
33 ZNF677 4 99.0 Highly correlated
34 ZNF701 4 28.9 Weakly correlated
35 ZNF671 3 94.0 Moderately correlated
36 ZNF735 3 28.9 Weakly correlated
37 ZNF567 3 99.0 Highly correlated
38 ZNF793 3 99.0 Highly correlated
39 ZNF197 3 99.0 Highly correlated
40 ZFP37 3 99.0 Highly correlated
41 ZFP57 3 87.0 Moderately correlated
42 ZNF257 3 0.0 Weakly correlated
43 ZNF264 3 99.0 Highly correlated
44 ZNF75D 2 94.0 Moderately correlated
45 ZNF324 2 99.0 Highly correlated
46 ZNF597 2 94.0 Moderately correlated
47 ZNF705D 2 28.9 Weakly correlated
48 ZNF287 2 99.0 Highly correlated
49 ZNF263 2 180.0 Weakly correlated
50 ZNF749 2 28.9 Weakly correlated
51 ZKSCAN8 2 160.0 Weakly correlated
52 ZNF549 2 87.0 Moderately correlated
53 ZNF471 2 94.0 Moderately correlated
54 ZNF573 1 94.0 Moderately correlated
55 ZNF610 1 28.9 Weakly correlated
56 ZFP69 1 99.0 Highly correlated
57 ZFP82 1 99.0 Highly correlated
58 ZNF528 1 43.0 Weakly correlated
59 ZNF169 1 94.0 Moderately correlated
60 ZNF585B 1 99.0 Highly correlated
61 ZNF823 1 43.0 Weakly correlated
62 ZNF786 1 99.0 Highly correlated
63 ZNF684 1 99.0 Highly correlated
64 ZNF589 1 28.9 Weakly correlated
65 ZNF486 1 8.6 Weakly correlated
66 ZNF394 1 99.0 Highly correlated
67 ZNF679 1 28.9 Weakly correlated
68 ZNF432 1 99.0 Highly correlated
69 ZNF547 1 74.0 Weakly correlated
70 ZNF333 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF136 74.0 Weakly correlated
2 ZNF248 99.0 Highly correlated
3 ZNF251 94.0 Moderately correlated
4 ZNF317 99.0 Highly correlated
5 ZNF558 99.0 Highly correlated
6 ZNF680 28.9 Weakly correlated
7 ZNF766 43.0 Weakly correlated
8 ZNF84 99.0 Highly correlated
9 ZNF92 28.9 Weakly correlated