ZRdb KZFP & Repeats
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LINE_L1ME1_3END

  • Name
    L1ME1_3END
  • Repbase
    L1ME1
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000293
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cttgtatccagaatatataaagaactctcaaaactcaataataagaaaacaaacaacccaattaaaaaatgggcaaaagatttgaacagacacttcaccaaagaagatatacggatggcaaataagcacatgaaaagatgctcaacatcattagtcattagggaaatgcaaattaaaaccacaatgagataccactacacacctattagaatggctaaaattaaaaagactgacaataccaagtgttggcgaggatgtggagcaactggaactctcatacattgctggtgggaatgcaaaatggtacagccactttggaaaacagtttggcagtttcttanaaagttaaacatacacttaccatatgacccagcaattccactcctaggtatttacccaagagaaatgaaaacatatgtccacacaaagacttgtacacgaatgttcatagcagctttattcgtaatagccaaaaactggaaacaacccaaatgtccatcaacnggtgaatggataaacaaattgtggtatatccatacaatggaatactactcagcaataaaaaggaacgaactactgatacacgcaacaacatggatgaatctcaaaancattatgctgagtgaaagaagccagacacaaaagantacatactgtatgattccatttatatgaaattctagaaaaggcaaaactatagtgacagaaagcagatcagtggttgccnggggctgggggtggggggaggggattgactacaaaggggcacgagggaacttttgggggtgatggaaatgttctntatcttgattgtggtggtggttacacgantgtatacatttgtcaaaactcatcgaactgtacacttaaaataggtgnattttattgtatgtnaattatacctcaataaagctgattttaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 2420 99.0 Highly correlated
2 ZNF317 703 99.0 Highly correlated
3 ZNF8 510 99.0 Highly correlated
4 ZNF251 504 94.0 Moderately correlated
5 ZNF680 336 28.9 Weakly correlated
6 ZIM3 307 87.0 Moderately correlated
7 ZNF766 295 43.0 Weakly correlated
8 ZNF394 269 99.0 Highly correlated
9 ZNF263 192 180.0 Weakly correlated
10 ZNF723 189 15.2 Weakly correlated
11 ZNF248 173 99.0 Highly correlated
12 ZNF92 169 28.9 Weakly correlated
13 ZNF679 167 28.9 Weakly correlated
14 ZFP28 161 99.0 Highly correlated
15 ZNF140 155 99.0 Highly correlated
16 ZNF705B 140 28.9 Weakly correlated
17 ZNF793 136 99.0 Highly correlated
18 ZNF558 127 99.0 Highly correlated
19 ZNF2 126 99.0 Highly correlated
20 ZNF133 118 99.0 Highly correlated
21 ZNF18 114 160.0 Weakly correlated
22 ZNF486 111 8.6 Weakly correlated
23 ZNF81 109 99.0 Highly correlated
24 ZFP37 104 99.0 Highly correlated
25 ZNF705D 100 28.9 Weakly correlated
26 ZNF101 90 43.0 Weakly correlated
27 ZNF26 90 99.0 Highly correlated
28 ZNF136 86 74.0 Weakly correlated
29 ZNF175 86 94.0 Moderately correlated
30 ZNF490 79 43.0 Weakly correlated
31 ZNF84 76 99.0 Highly correlated
32 ZNF182 75 99.0 Highly correlated
33 ZNF324 75 99.0 Highly correlated
34 ZNF589 72 28.9 Weakly correlated
35 ZNF534 70 19.6 Weakly correlated
36 ZFP69B 65 99.0 Highly correlated
37 ZNF479 64 6.4 Weakly correlated
38 ZKSCAN1 62 160.0 Weakly correlated
39 ZNF554 61 99.0 Highly correlated
40 ZNF610 59 28.9 Weakly correlated
41 ZNF257 55 0.0 Weakly correlated
42 ZNF160 54 74.0 Weakly correlated
43 ZNF274 52 99.0 Highly correlated
44 ZNF354A 52 99.0 Highly correlated
45 ZNF597 52 94.0 Moderately correlated
46 ZKSCAN8 50 160.0 Weakly correlated
47 ZNF584 47 99.0 Highly correlated
48 ZFP69 46 99.0 Highly correlated
49 ZNF197 44 99.0 Highly correlated
50 ZNF441 44 43.0 Weakly correlated
51 ZNF585A 44 99.0 Highly correlated
52 ZNF735 40 28.9 Weakly correlated
53 ZNF75D 38 94.0 Moderately correlated
54 ZNF471 37 94.0 Moderately correlated
55 ZNF567 34 99.0 Highly correlated
56 ZNF10 33 99.0 Highly correlated
57 ZNF320 33 28.9 Weakly correlated
58 ZNF701 33 28.9 Weakly correlated
59 ZFP14 32 99.0 Highly correlated
60 ZNF184 32 99.0 Highly correlated
61 ZNF506 32 28.9 Weakly correlated
62 ZNF287 31 99.0 Highly correlated
63 ZFP57 29 87.0 Moderately correlated
64 ZNF264 29 99.0 Highly correlated
65 ZNF485 28 94.0 Moderately correlated
66 ZNF28 26 28.9 Weakly correlated
67 ZNF429 26 28.9 Weakly correlated
68 ZNF528 25 43.0 Weakly correlated
69 ZNF585B 25 99.0 Highly correlated
70 ZNF202 23 160.0 Weakly correlated
71 ZNF677 20 99.0 Highly correlated
72 ZFP30 19 99.0 Highly correlated
73 ZNF7 19 99.0 Highly correlated
74 ZNF671 18 94.0 Moderately correlated
75 ZNF519 17 19.6 Weakly correlated
76 ZNF284 16 43.0 Weakly correlated
77 ZNF350 16 99.0 Highly correlated
78 ZNF808 16 19.6 Weakly correlated
79 ZNF141 15 43.0 Weakly correlated
80 ZNF169 15 94.0 Moderately correlated
81 ZNF211 15 94.0 Moderately correlated
82 ZNF440 15 28.9 Weakly correlated
83 ZNF547 15 74.0 Weakly correlated
84 ZNF879 15 99.0 Highly correlated
85 ZNF707 14 74.0 Weakly correlated
86 ZNF823 14 43.0 Weakly correlated
87 ZFP90 13 99.0 Highly correlated
88 ZNF549 13 87.0 Moderately correlated
89 ZNF695 12 28.9 Weakly correlated
90 ZNF792 12 94.0 Moderately correlated
91 ZKSCAN5 10 160.0 Weakly correlated
92 ZNF33A 10 99.0 Highly correlated
93 ZNF230 9 28.9 Weakly correlated
94 ZNF331 9 94.0 Moderately correlated
95 ZNF41 9 99.0 Highly correlated
96 ZNF641 9 99.0 Highly correlated
97 ZNF716 9 19.6 Weakly correlated
98 ZNF778 9 74.0 Weakly correlated
99 ZNF91 9 6.0 Weakly correlated
100 ZNF583 8 99.0 Highly correlated
101 ZNF17 7 69.0 Weakly correlated
102 ZNF224 7 69.0 Weakly correlated
103 ZNF273 7 28.9 Weakly correlated
104 ZNF432 7 99.0 Highly correlated
105 ZNF878 7 43.0 Weakly correlated
106 ZNF425 6 94.0 Moderately correlated
107 ZNF510 6 99.0 Highly correlated
108 ZNF563 6 28.9 Weakly correlated
109 ZNF682 6 28.9 Weakly correlated
110 ZNF700 6 28.9 Weakly correlated
111 ZNF799 6 43.0 Weakly correlated
112 ZNF816 6 28.9 Weakly correlated
113 ZNF30 5 94.0 Moderately correlated
114 ZNF354C 5 99.0 Highly correlated
115 ZNF44 5 43.0 Weakly correlated
116 ZNF468 5 28.9 Weakly correlated
117 ZNF674 5 99.0 Highly correlated
118 ZNF730 5 19.6 Weakly correlated
119 ZNF786 5 99.0 Highly correlated
120 ZNF93 5 8.6 Weakly correlated
121 ZNF250 4 99.0 Highly correlated
122 ZNF282 4 319.0 Weakly correlated
123 ZNF334 4 99.0 Highly correlated
124 ZNF613 4 99.0 Highly correlated
125 ZNF675 4 8.6 Weakly correlated
126 ZNF736 4 43.0 Weakly correlated
127 ZNF845 4 28.9 Weakly correlated
128 ZFP82 3 99.0 Highly correlated
129 ZNF124 3 43.0 Weakly correlated
130 ZNF135 3 94.0 Moderately correlated
131 ZNF43 3 43.0 Weakly correlated
132 ZNF483 3 99.0 Highly correlated
133 ZNF559 3 74.0 Weakly correlated
134 ZNF568 3 99.0 Highly correlated
135 ZNF614 3 99.0 Highly correlated
136 ZNF85 3 28.9 Weakly correlated
137 ZNF225 2 74.0 Weakly correlated
138 ZNF337 2 43.0 Weakly correlated
139 ZNF354B 2 99.0 Highly correlated
140 ZNF436 2 180.0 Weakly correlated
141 ZNF445 2 99.0 Highly correlated
142 ZNF454 2 99.0 Highly correlated
143 ZNF45 2 99.0 Highly correlated
144 ZNF529 2 99.0 Highly correlated
145 ZNF573 2 94.0 Moderately correlated
146 ZNF578 2 15.2 Weakly correlated
147 ZNF586 2 43.0 Weakly correlated
148 ZNF626 2 0.0 Weakly correlated
149 ZNF658 2 99.0 Highly correlated
150 ZNF667 2 99.0 Highly correlated
151 ZNF777 2 319.0 Weakly correlated
152 ZNF77 2 87.0 Moderately correlated
153 ZNF780A 2 43.0 Weakly correlated
154 ZNF813 2 28.9 Weakly correlated
155 PRDM9 1 0.0 Weakly correlated
156 ZIK1 1 87.0 Moderately correlated
157 ZNF154 1 94.0 Moderately correlated
158 ZNF189 1 99.0 Highly correlated
159 ZNF205 1 180.0 Weakly correlated
160 ZNF222 1 43.0 Weakly correlated
161 ZNF234 1 99.0 Highly correlated
162 ZNF267 1 43.0 Weakly correlated
163 ZNF302 1 43.0 Weakly correlated
164 ZNF304 1 99.0 Highly correlated
165 ZNF347 1 43.0 Weakly correlated
166 ZNF433 1 43.0 Weakly correlated
167 ZNF442 1 43.0 Weakly correlated
168 ZNF480 1 43.0 Weakly correlated
169 ZNF484 1 99.0 Highly correlated
170 ZNF500 1 160.0 Weakly correlated
171 ZNF530 1 28.9 Weakly correlated
172 ZNF543 1 99.0 Highly correlated
173 ZNF560 1 43.0 Weakly correlated
174 ZNF564 1 74.0 Weakly correlated
175 ZNF569 1 99.0 Highly correlated
176 ZNF570 1 99.0 Highly correlated
177 ZNF605 1 99.0 Highly correlated
178 ZNF611 1 19.6 Weakly correlated
179 ZNF616 1 43.0 Weakly correlated
180 ZNF627 1 74.0 Weakly correlated
181 ZNF649 1 28.9 Weakly correlated
182 ZNF684 1 99.0 Highly correlated
183 ZNF705E 1 0.0 Weakly correlated
184 ZNF749 1 28.9 Weakly correlated
185 ZNF761 1 19.6 Weakly correlated
186 ZNF765 1 8.6 Weakly correlated
187 ZNF780B 1 74.0 Weakly correlated
188 ZNF789 1 99.0 Highly correlated
189 ZNF850 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 418 94.0 Moderately correlated
2 ZNF8 375 99.0 Highly correlated
3 ZNF382 276 99.0 Highly correlated
4 ZIM3 162 87.0 Moderately correlated
5 ZNF317 146 99.0 Highly correlated
6 ZNF248 144 99.0 Highly correlated
7 ZNF723 124 15.2 Weakly correlated
8 ZNF81 98 99.0 Highly correlated
9 ZNF680 96 28.9 Weakly correlated
10 ZFP28 80 99.0 Highly correlated
11 ZNF133 77 99.0 Highly correlated
12 ZNF26 67 99.0 Highly correlated
13 ZNF84 64 99.0 Highly correlated
14 ZNF136 63 74.0 Weakly correlated
15 ZNF766 62 43.0 Weakly correlated
16 ZNF793 55 99.0 Highly correlated
17 ZNF490 53 43.0 Weakly correlated
18 ZNF92 47 28.9 Weakly correlated
19 ZNF263 47 180.0 Weakly correlated
20 ZNF534 45 19.6 Weakly correlated
21 ZNF101 42 43.0 Weakly correlated
22 ZNF140 41 99.0 Highly correlated
23 ZNF160 40 74.0 Weakly correlated
24 ZNF558 38 99.0 Highly correlated
25 ZFP69 37 99.0 Highly correlated
26 ZNF354A 37 99.0 Highly correlated
27 ZNF705B 33 28.9 Weakly correlated
28 ZNF10 31 99.0 Highly correlated
29 ZNF735 30 28.9 Weakly correlated
30 ZNF479 29 6.4 Weakly correlated
31 ZNF287 29 99.0 Highly correlated
32 ZNF567 28 99.0 Highly correlated
33 ZFP14 27 99.0 Highly correlated
34 ZNF585A 26 99.0 Highly correlated
35 ZNF705D 22 28.9 Weakly correlated
36 ZNF486 19 8.6 Weakly correlated
37 ZNF701 19 28.9 Weakly correlated
38 ZNF264 18 99.0 Highly correlated
39 ZNF7 16 99.0 Highly correlated
40 ZNF485 16 94.0 Moderately correlated
41 ZNF677 16 99.0 Highly correlated
42 ZNF471 16 94.0 Moderately correlated
43 ZNF75D 15 94.0 Moderately correlated
44 ZNF679 12 28.9 Weakly correlated
45 ZNF324 12 99.0 Highly correlated
46 ZNF202 11 160.0 Weakly correlated
47 ZFP90 10 99.0 Highly correlated
48 ZNF18 10 160.0 Weakly correlated
49 ZNF440 10 28.9 Weakly correlated
50 ZFP57 9 87.0 Moderately correlated
51 ZNF257 9 0.0 Weakly correlated
52 ZNF506 8 28.9 Weakly correlated
53 ZNF671 8 94.0 Moderately correlated
54 ZNF320 8 28.9 Weakly correlated
55 ZNF597 8 94.0 Moderately correlated
56 ZNF707 8 74.0 Weakly correlated
57 ZFP37 7 99.0 Highly correlated
58 ZNF350 7 99.0 Highly correlated
59 ZNF429 7 28.9 Weakly correlated
60 ZNF528 7 43.0 Weakly correlated
61 ZNF554 7 99.0 Highly correlated
62 ZKSCAN5 6 160.0 Weakly correlated
63 ZNF141 6 43.0 Weakly correlated
64 ZNF610 6 28.9 Weakly correlated
65 ZNF879 6 99.0 Highly correlated
66 ZNF432 6 99.0 Highly correlated
67 ZKSCAN1 4 160.0 Weakly correlated
68 ZNF394 4 99.0 Highly correlated
69 ZNF695 4 28.9 Weakly correlated
70 ZNF28 4 28.9 Weakly correlated
71 ZNF589 4 28.9 Weakly correlated
72 ZNF823 4 43.0 Weakly correlated
73 ZNF675 4 8.6 Weakly correlated
74 ZNF716 4 19.6 Weakly correlated
75 ZNF175 4 94.0 Moderately correlated
76 ZNF197 4 99.0 Highly correlated
77 ZNF211 4 94.0 Moderately correlated
78 ZNF44 4 43.0 Weakly correlated
79 ZFP82 3 99.0 Highly correlated
80 ZNF41 3 99.0 Highly correlated
81 ZNF792 3 94.0 Moderately correlated
82 ZNF585B 3 99.0 Highly correlated
83 ZNF674 3 99.0 Highly correlated
84 ZKSCAN8 2 160.0 Weakly correlated
85 ZNF169 2 94.0 Moderately correlated
86 ZNF43 2 43.0 Weakly correlated
87 ZNF584 2 99.0 Highly correlated
88 ZNF184 2 99.0 Highly correlated
89 ZNF273 2 28.9 Weakly correlated
90 ZNF337 2 43.0 Weakly correlated
91 ZNF547 2 74.0 Weakly correlated
92 ZNF816 2 28.9 Weakly correlated
93 ZNF250 2 99.0 Highly correlated
94 ZNF468 2 28.9 Weakly correlated
95 ZNF483 2 99.0 Highly correlated
96 ZNF626 2 0.0 Weakly correlated
97 ZNF225 2 74.0 Weakly correlated
98 ZNF274 2 99.0 Highly correlated
99 ZNF2 2 99.0 Highly correlated
100 ZNF878 2 43.0 Weakly correlated
101 ZNF549 2 87.0 Moderately correlated
102 ZNF808 2 19.6 Weakly correlated
103 ZNF154 1 94.0 Moderately correlated
104 ZNF282 1 319.0 Weakly correlated
105 ZNF30 1 94.0 Moderately correlated
106 ZNF45 1 99.0 Highly correlated
107 ZNF778 1 74.0 Weakly correlated
108 ZNF484 1 99.0 Highly correlated
109 ZNF573 1 94.0 Moderately correlated
110 ZNF641 1 99.0 Highly correlated
111 ZNF667 1 99.0 Highly correlated
112 ZNF230 1 28.9 Weakly correlated
113 ZNF284 1 43.0 Weakly correlated
114 ZNF530 1 28.9 Weakly correlated
115 ZNF649 1 28.9 Weakly correlated
116 ZNF780A 1 43.0 Weakly correlated
117 ZNF33A 1 99.0 Highly correlated
118 ZNF684 1 99.0 Highly correlated
119 ZNF786 1 99.0 Highly correlated
120 ZNF347 1 43.0 Weakly correlated
121 ZNF559 1 74.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP14 99.0 Highly correlated
2 ZKSCAN5 160.0 Weakly correlated
3 ZNF248 99.0 Highly correlated
4 ZNF251 94.0 Moderately correlated
5 ZNF263 180.0 Weakly correlated
6 ZNF317 99.0 Highly correlated
7 ZNF324 99.0 Highly correlated
8 ZNF479 6.4 Weakly correlated
9 ZNF486 8.6 Weakly correlated
10 ZNF554 99.0 Highly correlated
11 ZNF597 94.0 Moderately correlated
12 ZNF610 28.9 Weakly correlated
13 ZNF680 28.9 Weakly correlated
14 ZNF75D 94.0 Moderately correlated
15 ZNF793 99.0 Highly correlated
16 ZNF84 99.0 Highly correlated
17 ZNF92 28.9 Weakly correlated