ZRdb KZFP & Repeats
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LINE_L1MD_ORF2

  • Name
    L1MD_ORF2
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000292
Description :

ORF2 ends at bp 675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
atggcagacttaagccctaacatatcaataattacattaaatgtaaatggtctaaatacaccaattaaaagacagagattggcagagtggattaaaaaacatgacccaactatatgctgtctacaagaaactcacttcaaatataacgatataggtaggttgaaagtaaaaggatggaaaaagatataccatgcaaacattaatcaaaagaaagcaggagtggctatattaatatcagataaagtagacttcagagcaaagaaaattaccagagacagagagggacattacataatgataaaagggtcaatccaccaagaagacatagcaatcctaaatgtgtatgcaccaaacaacagagctncaaaatacgtgaagcaaaaactgatagaactgaaaggagaaatagacaaatccacaattatagttggagacttcaacacccctctctcagcaattgatagaacaactagacagaaaatcagcaaggatatagaagaactnaacaacaccatcaaccaacaggatctaatcgacatttatagaacactccacccaacaacagcagaatacacattcttttcaagtgcccacggaacatntaccaagatagaccatatcctgggccataaaacaaacctcaacaaatttaaaagaattgaaatcatacagagtgtgttctctgaccacaatggaatcaaactagaaatcaataacagaaagataacaggaaaatctccaaacacttggaaactaaacaacacacttctaaataatccatgggtcaaagaggaagtctcaagggaaattaaaaaatacattgaactgaatgaaaatgaaaatacaacatatcaaaatttgtgggacgcagctaaagcagtgctgagagggaaatttatagcactaaatgcntacattagaaaagaggaaaagtctcaaatcaataatctaagctcccacctcaagaanctagaaaaagaagagcaaaataaacccaaagcaagcagaaggaaggaaataataaagataagagcagaaatcaatgaaattgaaaacagaaaaacaatagagaaaatcaatgaaacaaaaagctggttctttgaaaagatcaataaaattgacaaacctctagcaagactgacaaagaaaaaaagagagaagacacaaattaccaatatcaggaatgaaacaggggatatcactacagaccctgcagacatcaaaaggataataagggaatactacgaacaactctacgcacataaatttgacaacttagatgaaatggaccaattcctcgaaaaacacaaactaccanaactcacccaanatgaaatagataatttgaatagccctataactattaaggaaattgaattcgtaatttnaaaactccccaaaaagaaatctccaggcccagatggtttcactggagaattctaccaaacgtttaaagaagaattaacaccaattctacacaatctcttccagaaaatagaagaggagggaacacttcccaactcattttatgaggccagtattaccctgataccaaaaccagacaaagacagtacaaaaaaagaaaactacagaccaatatccctcatgaacatagacgcaaaaatcctcaacaaaatattagcaaatngaattcagcaatatataaaaagaattatacaccatgaccaagtggggtttattccaggnatgcaaggctggttcaatattcgaaaatcaatcaatgtaatccaccatattaacaggctaaagaagaaaaatcacatgatcatatcaattgatgcagaaaaagcatttgacaaaattcaacacccattcatgataaaaactctcagnaaactaggaatagaggggaacttcctcaacttgataaagagcatctacaaaaaacctacagctaacatcatacttaatggtgaaagactgaatgctttccccctaagatcgggaacaaggcaaggatgtccgctctcaccactcttattcaacatagtactggaagttctagccagtgcaataaggcaagaaaaggaaataaaaggcatacagattggaaaggaagaaataaaactgtccctatttgcagatgacatgattgtctacgtagaaaatcccaaggaatctacaaaaaaactcctagaactaataagtgagttcagcaaggtcgcaggatacaagatnaacatacaaaaatcaattgtatttctatatactagcaatgaacacgtggaaaccgaaattaaaaatacaataccatttacaatcgctcaaaaaaaaatgaaatacttaggtataaatctaacaaaacatgtacaggacttgtatgctgaaaactacaaaacgctgatgaaagaaatcaaagaagatctaaataaatggagagacataccgtgttcatggattggaagactcaacatagtaaagatgtcaattctccccaaattgatntacaggtttaacgcaattcctatcaaaatcccagcaagattttttgtagatatagacaagnttattctaaaatttatatggaaaggcaaaggaactagaatagctaaaacaattttgaaaaagaagaataaagtgggaggaatcantctacccgatttcaagacttactatatagctacagtaatcaagacngtgtggtattggcggagggatagacacatagatcaatggaacagaatagagaacccagaaatagacccacacaaatatgcccaactgatttttgacaaaggtgcaaaagcaattcaatggaggaaggatagccttttcaacaaatggtgctggagcaattggacatccataggcaaaaaaatgaacctcgacctaaacctcacaccttatacaaaaattaactcaaaatggatcatagacttaaatgtaaaacgtaaaactataaaacttttagaaaaaaacataggagaaaatcttcgggatctagggctaggcaaagagttcttagacttgacaccaaaagcacgatccataaaaggaaaaattgataaattggacttcatcaaaattaaaaacttttgctctgcgaaagaccctgttaagaggatgaaaagacaagctacagactgggagaaaatatttgcaaaccacatatccgacaaaggactngtatctagaatatataaagaactctcaaaactcaacagtaaaaaaacaaacaatccaattagaaaatgggcaaaagacatgaanagacatttcaccgaagaggatatacagatggcaaataagcacatgaaaagatgttcaacatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 766 99.0 Highly correlated
2 ZIM3 94 87.0 Moderately correlated
3 ZNF394 84 99.0 Highly correlated
4 ZNF680 80 28.9 Weakly correlated
5 ZNF248 78 99.0 Highly correlated
6 ZNF317 63 99.0 Highly correlated
7 ZNF766 59 43.0 Weakly correlated
8 ZNF705B 56 28.9 Weakly correlated
9 ZNF723 44 15.2 Weakly correlated
10 ZFP28 42 99.0 Highly correlated
11 ZFP37 40 99.0 Highly correlated
12 ZNF324 38 99.0 Highly correlated
13 ZNF2 37 99.0 Highly correlated
14 ZNF18 34 160.0 Weakly correlated
15 ZNF558 34 99.0 Highly correlated
16 ZNF263 32 180.0 Weakly correlated
17 ZNF705D 29 28.9 Weakly correlated
18 ZNF101 27 43.0 Weakly correlated
19 ZNF182 27 99.0 Highly correlated
20 ZNF679 27 28.9 Weakly correlated
21 ZNF92 26 28.9 Weakly correlated
22 ZFP69B 25 99.0 Highly correlated
23 ZNF251 24 94.0 Moderately correlated
24 ZKSCAN8 22 160.0 Weakly correlated
25 ZNF610 21 28.9 Weakly correlated
26 ZNF84 21 99.0 Highly correlated
27 ZFP69 20 99.0 Highly correlated
28 ZNF589 19 28.9 Weakly correlated
29 ZKSCAN1 18 160.0 Weakly correlated
30 ZNF534 18 19.6 Weakly correlated
31 ZNF441 16 43.0 Weakly correlated
32 ZNF175 15 94.0 Moderately correlated
33 ZNF490 15 43.0 Weakly correlated
34 ZNF584 15 99.0 Highly correlated
35 ZNF506 14 28.9 Weakly correlated
36 ZFP90 12 99.0 Highly correlated
37 ZNF479 12 6.4 Weakly correlated
38 ZNF547 11 74.0 Weakly correlated
39 ZNF81 11 99.0 Highly correlated
40 ZNF8 11 99.0 Highly correlated
41 ZNF454 10 99.0 Highly correlated
42 ZNF597 10 94.0 Moderately correlated
43 ZNF75D 10 94.0 Moderately correlated
44 ZNF793 10 99.0 Highly correlated
45 ZFP57 9 87.0 Moderately correlated
46 ZNF197 9 99.0 Highly correlated
47 ZNF486 9 8.6 Weakly correlated
48 ZNF554 9 99.0 Highly correlated
49 ZNF585A 9 99.0 Highly correlated
50 ZNF585B 9 99.0 Highly correlated
51 ZNF707 9 74.0 Weakly correlated
52 ZNF274 8 99.0 Highly correlated
53 ZNF133 7 99.0 Highly correlated
54 ZNF264 7 99.0 Highly correlated
55 ZNF354A 7 99.0 Highly correlated
56 ZNF471 7 94.0 Moderately correlated
57 ZNF677 7 99.0 Highly correlated
58 ZNF792 7 94.0 Moderately correlated
59 ZNF879 7 99.0 Highly correlated
60 ZNF257 6 0.0 Weakly correlated
61 ZNF528 6 43.0 Weakly correlated
62 ZNF583 6 99.0 Highly correlated
63 ZNF140 5 99.0 Highly correlated
64 ZNF211 5 94.0 Moderately correlated
65 ZNF485 5 94.0 Moderately correlated
66 ZNF701 5 28.9 Weakly correlated
67 ZNF735 5 28.9 Weakly correlated
68 ZNF808 5 19.6 Weakly correlated
69 ZNF202 4 160.0 Weakly correlated
70 ZNF287 4 99.0 Highly correlated
71 ZNF429 4 28.9 Weakly correlated
72 ZNF682 4 28.9 Weakly correlated
73 ZNF823 4 43.0 Weakly correlated
74 ZNF85 4 28.9 Weakly correlated
75 ZNF273 3 28.9 Weakly correlated
76 ZNF331 3 94.0 Moderately correlated
77 ZNF44 3 43.0 Weakly correlated
78 ZNF519 3 19.6 Weakly correlated
79 ZNF549 3 87.0 Moderately correlated
80 ZNF778 3 74.0 Weakly correlated
81 ZNF93 3 8.6 Weakly correlated
82 ZNF10 2 99.0 Highly correlated
83 ZNF17 2 69.0 Weakly correlated
84 ZNF184 2 99.0 Highly correlated
85 ZNF189 2 99.0 Highly correlated
86 ZNF224 2 69.0 Weakly correlated
87 ZNF26 2 99.0 Highly correlated
88 ZNF30 2 94.0 Moderately correlated
89 ZNF320 2 28.9 Weakly correlated
90 ZNF334 2 99.0 Highly correlated
91 ZNF425 2 94.0 Moderately correlated
92 ZNF440 2 28.9 Weakly correlated
93 ZNF560 2 43.0 Weakly correlated
94 ZNF563 2 28.9 Weakly correlated
95 ZNF641 2 99.0 Highly correlated
96 ZNF671 2 94.0 Moderately correlated
97 ZNF730 2 19.6 Weakly correlated
98 ZNF786 2 99.0 Highly correlated
99 ZFP14 1 99.0 Highly correlated
100 ZIK1 1 87.0 Moderately correlated
101 ZKSCAN4 1 99.0 Highly correlated
102 ZNF135 1 94.0 Moderately correlated
103 ZNF136 1 74.0 Weakly correlated
104 ZNF154 1 94.0 Moderately correlated
105 ZNF157 1 99.0 Highly correlated
106 ZNF160 1 74.0 Weakly correlated
107 ZNF225 1 74.0 Weakly correlated
108 ZNF234 1 99.0 Highly correlated
109 ZNF284 1 43.0 Weakly correlated
110 ZNF28 1 28.9 Weakly correlated
111 ZNF337 1 43.0 Weakly correlated
112 ZNF350 1 99.0 Highly correlated
113 ZNF41 1 99.0 Highly correlated
114 ZNF430 1 19.6 Weakly correlated
115 ZNF433 1 43.0 Weakly correlated
116 ZNF436 1 180.0 Weakly correlated
117 ZNF43 1 43.0 Weakly correlated
118 ZNF446 1 94.0 Moderately correlated
119 ZNF468 1 28.9 Weakly correlated
120 ZNF487 1 28.9 Weakly correlated
121 ZNF529 1 99.0 Highly correlated
122 ZNF530 1 28.9 Weakly correlated
123 ZNF544 1 0.0 Weakly correlated
124 ZNF567 1 99.0 Highly correlated
125 ZNF607 1 43.0 Weakly correlated
126 ZNF611 1 19.6 Weakly correlated
127 ZNF614 1 99.0 Highly correlated
128 ZNF616 1 43.0 Weakly correlated
129 ZNF630 1 94.0 Moderately correlated
130 ZNF649 1 28.9 Weakly correlated
131 ZNF689 1 99.0 Highly correlated
132 ZNF695 1 28.9 Weakly correlated
133 ZNF700 1 28.9 Weakly correlated
134 ZNF705E 1 0.0 Weakly correlated
135 ZNF729 1 8.6 Weakly correlated
136 ZNF763 1 15.2 Weakly correlated
137 ZNF789 1 99.0 Highly correlated
138 ZNF799 1 43.0 Weakly correlated
139 ZNF7 1 99.0 Highly correlated
140 ZNF829 1 99.0 Highly correlated
141 ZNF845 1 28.9 Weakly correlated
142 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 99 99.0 Highly correlated
2 ZNF248 63 99.0 Highly correlated
3 ZIM3 41 87.0 Moderately correlated
4 ZNF723 25 15.2 Weakly correlated
5 ZNF680 24 28.9 Weakly correlated
6 ZFP28 22 99.0 Highly correlated
7 ZNF84 17 99.0 Highly correlated
8 ZFP69 16 99.0 Highly correlated
9 ZNF324 14 99.0 Highly correlated
10 ZNF101 13 43.0 Weakly correlated
11 ZNF317 11 99.0 Highly correlated
12 ZNF92 11 28.9 Weakly correlated
13 ZNF81 10 99.0 Highly correlated
14 ZFP90 10 99.0 Highly correlated
15 ZNF766 9 43.0 Weakly correlated
16 ZNF705D 8 28.9 Weakly correlated
17 ZNF705B 8 28.9 Weakly correlated
18 ZNF490 6 43.0 Weakly correlated
19 ZNF534 6 19.6 Weakly correlated
20 ZNF75D 6 94.0 Moderately correlated
21 ZNF879 5 99.0 Highly correlated
22 ZNF585A 5 99.0 Highly correlated
23 ZNF677 4 99.0 Highly correlated
24 ZNF558 4 99.0 Highly correlated
25 ZNF792 4 94.0 Moderately correlated
26 ZNF133 4 99.0 Highly correlated
27 ZNF202 3 160.0 Weakly correlated
28 ZNF263 3 180.0 Weakly correlated
29 ZNF140 3 99.0 Highly correlated
30 ZNF287 3 99.0 Highly correlated
31 ZNF793 3 99.0 Highly correlated
32 ZNF8 3 99.0 Highly correlated
33 ZNF251 3 94.0 Moderately correlated
34 ZFP57 2 87.0 Moderately correlated
35 ZNF264 2 99.0 Highly correlated
36 ZNF211 2 94.0 Moderately correlated
37 ZNF823 2 43.0 Weakly correlated
38 ZNF44 2 43.0 Weakly correlated
39 ZNF641 2 99.0 Highly correlated
40 ZNF18 2 160.0 Weakly correlated
41 ZKSCAN8 2 160.0 Weakly correlated
42 ZNF707 2 74.0 Weakly correlated
43 ZFP37 2 99.0 Highly correlated
44 ZNF354A 2 99.0 Highly correlated
45 ZNF440 1 28.9 Weakly correlated
46 ZFP14 1 99.0 Highly correlated
47 ZNF730 1 19.6 Weakly correlated
48 ZNF671 1 94.0 Moderately correlated
49 ZNF584 1 99.0 Highly correlated
50 ZNF394 1 99.0 Highly correlated
51 ZNF701 1 28.9 Weakly correlated
52 ZNF93 1 8.6 Weakly correlated
53 ZNF175 1 94.0 Moderately correlated
54 ZNF589 1 28.9 Weakly correlated
55 ZNF506 1 28.9 Weakly correlated
56 ZNF610 1 28.9 Weakly correlated
57 ZNF585B 1 99.0 Highly correlated
58 ZNF630 1 94.0 Moderately correlated
59 ZKSCAN1 1 160.0 Weakly correlated
60 ZNF695 1 28.9 Weakly correlated
61 ZNF189 1 99.0 Highly correlated
62 ZNF273 1 28.9 Weakly correlated
63 ZNF583 1 99.0 Highly correlated
64 ZNF597 1 94.0 Moderately correlated
65 ZNF735 1 28.9 Weakly correlated
66 ZNF429 1 28.9 Weakly correlated
67 ZNF10 1 99.0 Highly correlated
68 ZNF225 1 74.0 Weakly correlated
69 ZNF471 1 94.0 Moderately correlated
70 ZNF7 1 99.0 Highly correlated
71 ZNF197 1 99.0 Highly correlated
72 ZNF607 1 43.0 Weakly correlated
73 ZNF519 1 19.6 Weakly correlated
74 ZNF479 1 6.4 Weakly correlated
75 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Highly correlated
2 ZFP90 99.0 Highly correlated
3 ZNF248 99.0 Highly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF382 99.0 Highly correlated
6 ZNF490 43.0 Weakly correlated
7 ZNF680 28.9 Weakly correlated
8 ZNF75D 94.0 Moderately correlated
9 ZNF766 43.0 Weakly correlated
10 ZNF84 99.0 Highly correlated
11 ZNF92 28.9 Weakly correlated