LINE_L1MDB_5END
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NameL1MDB_5END
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RepbaseL1MDB_5
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TypeLINE
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Emergence99.0 Mya
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Dfam Id
Description :
ORF1: ~937 to end
Consensus sequence
:
ttaaaaagacttccggtccggacaagatggcgtagacccgtttctccctgctcctccccgctaagtacaactataaaccctggaaataacgcaagaggcaaccaaaggagaactctgaaaggtggnaagaggaaggcgaactggtttgggaccccaggactggaggaacagcacagcggcagggcgtcttacgtccccccacccaacagaagaaggcgacccaggcccggcgtttcccgacccccaacctagcaacagaaggcagcccaggtaggctcattcctcccccggatcgaacgggagtccctccgacaacaccaggcgagcccggcgccaccggcaagggggatcgatcgggagccccgctaacaataagcggccaggggaagcgctctccttccccgccgggcctgagactcccctcccccgccgagagacaccgaggctgncaaggcagcaccggcaagagggatcccgccacaacaagcggcccggcccgggaagcctctttgtccccgcgggcctgagactcccctcccccacccagagacaccggggnngcaggcggcaccggcaagggggatcccgccacaacaagcgcccggcccgggaagcctcttcgtccccgcgggcccgagactcccctcccccgcccaccactcccttcccccaccnagagacaccnggcggcccggcctggggaaacnccttccgccccctcaggcagcaccagcagggaccagtgggagccccagcggcaccagataaaccaagcagaccaaaatagcaccgcaaaggctctgaaaattaaactgtcattggaaccacagcccacaaaagtaggccaggacctgcgtgctaaacctaaacagggtgactgcctgctaaaataaaagatttaaataggacccagagtctcctaacataatanncaaaatgtccaggatacaatnaaaaatcacccgtcataccaagaaccaggaaaatcacaacttgaatgagaaaagacaatcaactgacgccaacaccgagatgaatcagatgttggaattatctgacaaggattttaaagcagccatcataaaaatgcttcaacaagcaattacaaattctcttgaaacaaatgaaaaantaaaaatctcagcaaagaaatagaagttataaaaaagaaccaaatggaaattatagaactgaaaaatacaataacagaaattaaaaactcgctggatgggctcaatagtagagtggagatgacagaggatagaatcagtgaacttgaggacagatcaatagaatttacccaatctgaacaacagagagaaaatagactgaaaaaaaaatgaacagagcctcagggacctgtgggacaataacaaaagatccaacattcgtatcatcggagtcccagaggagaggagaaag
Repeats structure
:
Peak overlapping
:
| # | KZFP name | Record number | KZFP age(Mya) | Time correlation with Repeats | |
|---|---|---|---|---|---|
| 1 | ZNF382 | 61 | 99.0 | Highly correlated | |
| 2 | ZIM3 | 29 | 87.0 | Moderately correlated | |
| 3 | ZNF317 | 21 | 99.0 | Highly correlated | |
| 4 | ZNF558 | 17 | 99.0 | Highly correlated | |
| 5 | ZNF263 | 16 | 180.0 | Weakly correlated | |
| 6 | ZNF766 | 16 | 43.0 | Weakly correlated | |
| 7 | ZNF394 | 15 | 99.0 | Highly correlated | |
| 8 | ZFP37 | 14 | 99.0 | Highly correlated | |
| 9 | ZNF160 | 14 | 74.0 | Weakly correlated | |
| 10 | ZNF2 | 12 | 99.0 | Highly correlated | |
| 11 | ZNF534 | 11 | 19.6 | Weakly correlated | |
| 12 | ZNF610 | 10 | 28.9 | Weakly correlated | |
| 13 | ZNF680 | 10 | 28.9 | Weakly correlated | |
| 14 | ZNF18 | 9 | 160.0 | Weakly correlated | |
| 15 | ZNF202 | 9 | 160.0 | Weakly correlated | |
| 16 | ZNF28 | 9 | 28.9 | Weakly correlated | |
| 17 | ZNF324 | 9 | 99.0 | Highly correlated | |
| 18 | ZNF479 | 9 | 6.4 | Weakly correlated | |
| 19 | ZNF589 | 9 | 28.9 | Weakly correlated | |
| 20 | ZFP69B | 8 | 99.0 | Highly correlated | |
| 21 | ZNF101 | 8 | 43.0 | Weakly correlated | |
| 22 | ZNF679 | 7 | 28.9 | Weakly correlated | |
| 23 | ZNF705B | 7 | 28.9 | Weakly correlated | |
| 24 | ZNF793 | 7 | 99.0 | Highly correlated | |
| 25 | ZKSCAN1 | 6 | 160.0 | Weakly correlated | |
| 26 | ZNF506 | 6 | 28.9 | Weakly correlated | |
| 27 | ZFP28 | 5 | 99.0 | Highly correlated | |
| 28 | ZKSCAN8 | 5 | 160.0 | Weakly correlated | |
| 29 | ZNF257 | 5 | 0.0 | Weakly correlated | |
| 30 | ZNF282 | 5 | 319.0 | Weakly correlated | |
| 31 | ZNF519 | 5 | 19.6 | Weakly correlated | |
| 32 | ZNF554 | 5 | 99.0 | Highly correlated | |
| 33 | ZNF701 | 5 | 28.9 | Weakly correlated | |
| 34 | ZNF75D | 5 | 94.0 | Moderately correlated | |
| 35 | ZNF182 | 4 | 99.0 | Highly correlated | |
| 36 | ZNF197 | 4 | 99.0 | Highly correlated | |
| 37 | ZNF274 | 4 | 99.0 | Highly correlated | |
| 38 | ZNF468 | 4 | 28.9 | Weakly correlated | |
| 39 | ZNF490 | 4 | 43.0 | Weakly correlated | |
| 40 | ZNF705D | 4 | 28.9 | Weakly correlated | |
| 41 | ZNF8 | 4 | 99.0 | Highly correlated | |
| 42 | ZNF133 | 3 | 99.0 | Highly correlated | |
| 43 | ZNF264 | 3 | 99.0 | Highly correlated | |
| 44 | ZNF26 | 3 | 99.0 | Highly correlated | |
| 45 | ZNF331 | 3 | 94.0 | Moderately correlated | |
| 46 | ZNF547 | 3 | 74.0 | Weakly correlated | |
| 47 | ZNF585A | 3 | 99.0 | Highly correlated | |
| 48 | ZNF597 | 3 | 94.0 | Moderately correlated | |
| 49 | ZNF778 | 3 | 74.0 | Weakly correlated | |
| 50 | ZNF792 | 3 | 94.0 | Moderately correlated | |
| 51 | ZNF136 | 2 | 74.0 | Weakly correlated | |
| 52 | ZNF140 | 2 | 99.0 | Highly correlated | |
| 53 | ZNF175 | 2 | 94.0 | Moderately correlated | |
| 54 | ZNF33A | 2 | 99.0 | Highly correlated | |
| 55 | ZNF486 | 2 | 8.6 | Weakly correlated | |
| 56 | ZNF528 | 2 | 43.0 | Weakly correlated | |
| 57 | ZNF560 | 2 | 43.0 | Weakly correlated | |
| 58 | ZNF585B | 2 | 99.0 | Highly correlated | |
| 59 | ZNF677 | 2 | 99.0 | Highly correlated | |
| 60 | ZNF695 | 2 | 28.9 | Weakly correlated | |
| 61 | ZNF723 | 2 | 15.2 | Weakly correlated | |
| 62 | ZNF789 | 2 | 99.0 | Highly correlated | |
| 63 | ZNF84 | 2 | 99.0 | Highly correlated | |
| 64 | ZNF879 | 2 | 99.0 | Highly correlated | |
| 65 | ZNF92 | 2 | 28.9 | Weakly correlated | |
| 66 | PRDM9 | 1 | 0.0 | Weakly correlated | |
| 67 | RBAK | 1 | 99.0 | Highly correlated | |
| 68 | ZFP57 | 1 | 87.0 | Moderately correlated | |
| 69 | ZFP69 | 1 | 99.0 | Highly correlated | |
| 70 | ZFP90 | 1 | 99.0 | Highly correlated | |
| 71 | ZKSCAN5 | 1 | 160.0 | Weakly correlated | |
| 72 | ZNF100 | 1 | 28.9 | Weakly correlated | |
| 73 | ZNF141 | 1 | 43.0 | Weakly correlated | |
| 74 | ZNF189 | 1 | 99.0 | Highly correlated | |
| 75 | ZNF230 | 1 | 28.9 | Weakly correlated | |
| 76 | ZNF248 | 1 | 99.0 | Highly correlated | |
| 77 | ZNF253 | 1 | 19.6 | Weakly correlated | |
| 78 | ZNF273 | 1 | 28.9 | Weakly correlated | |
| 79 | ZNF284 | 1 | 43.0 | Weakly correlated | |
| 80 | ZNF320 | 1 | 28.9 | Weakly correlated | |
| 81 | ZNF337 | 1 | 43.0 | Weakly correlated | |
| 82 | ZNF343 | 1 | 74.0 | Weakly correlated | |
| 83 | ZNF347 | 1 | 43.0 | Weakly correlated | |
| 84 | ZNF354A | 1 | 99.0 | Highly correlated | |
| 85 | ZNF383 | 1 | 99.0 | Highly correlated | |
| 86 | ZNF41 | 1 | 99.0 | Highly correlated | |
| 87 | ZNF432 | 1 | 99.0 | Highly correlated | |
| 88 | ZNF441 | 1 | 43.0 | Weakly correlated | |
| 89 | ZNF454 | 1 | 99.0 | Highly correlated | |
| 90 | ZNF471 | 1 | 94.0 | Moderately correlated | |
| 91 | ZNF483 | 1 | 99.0 | Highly correlated | |
| 92 | ZNF485 | 1 | 94.0 | Moderately correlated | |
| 93 | ZNF510 | 1 | 99.0 | Highly correlated | |
| 94 | ZNF543 | 1 | 99.0 | Highly correlated | |
| 95 | ZNF544 | 1 | 0.0 | Weakly correlated | |
| 96 | ZNF549 | 1 | 87.0 | Moderately correlated | |
| 97 | ZNF559 | 1 | 74.0 | Weakly correlated | |
| 98 | ZNF567 | 1 | 99.0 | Highly correlated | |
| 99 | ZNF584 | 1 | 99.0 | Highly correlated | |
| 100 | ZNF611 | 1 | 19.6 | Weakly correlated | |
| 101 | ZNF674 | 1 | 99.0 | Highly correlated | |
| 102 | ZNF682 | 1 | 28.9 | Weakly correlated | |
| 103 | ZNF716 | 1 | 19.6 | Weakly correlated | |
| 104 | ZNF75A | 1 | 94.0 | Moderately correlated | |
| 105 | ZNF77 | 1 | 87.0 | Moderately correlated | |
| 106 | ZNF786 | 1 | 99.0 | Highly correlated | |
| 107 | ZNF799 | 1 | 43.0 | Weakly correlated | |
| 108 | ZNF808 | 1 | 19.6 | Weakly correlated | |
| 109 | ZNF845 | 1 | 28.9 | Weakly correlated | |
| 110 | ZNF846 | 1 | 74.0 | Weakly correlated | |
| 111 | ZNF878 | 1 | 43.0 | Weakly correlated |
KZFPs Motif in Repeats
:
| # | KZFP name | Record number | KZFP age(Mya) | Time correlation with Repeats | |
|---|---|---|---|---|---|
| 1 | ZIM3 | 15 | 87.0 | Moderately correlated | |
| 2 | ZNF160 | 11 | 74.0 | Weakly correlated | |
| 3 | ZNF558 | 7 | 99.0 | Highly correlated | |
| 4 | ZNF317 | 6 | 99.0 | Highly correlated | |
| 5 | ZNF382 | 6 | 99.0 | Highly correlated | |
| 6 | ZNF468 | 4 | 28.9 | Weakly correlated | |
| 7 | ZNF263 | 4 | 180.0 | Weakly correlated | |
| 8 | ZNF490 | 4 | 43.0 | Weakly correlated | |
| 9 | ZNF534 | 4 | 19.6 | Weakly correlated | |
| 10 | ZNF793 | 3 | 99.0 | Highly correlated | |
| 11 | ZNF75D | 3 | 94.0 | Moderately correlated | |
| 12 | ZNF506 | 3 | 28.9 | Weakly correlated | |
| 13 | ZFP28 | 3 | 99.0 | Highly correlated | |
| 14 | ZNF680 | 3 | 28.9 | Weakly correlated | |
| 15 | ZNF766 | 2 | 43.0 | Weakly correlated | |
| 16 | ZNF26 | 2 | 99.0 | Highly correlated | |
| 17 | ZNF485 | 2 | 94.0 | Moderately correlated | |
| 18 | ZNF84 | 2 | 99.0 | Highly correlated | |
| 19 | ZNF479 | 2 | 6.4 | Weakly correlated | |
| 20 | ZNF140 | 2 | 99.0 | Highly correlated | |
| 21 | ZNF136 | 2 | 74.0 | Weakly correlated | |
| 22 | ZNF723 | 2 | 15.2 | Weakly correlated | |
| 23 | ZNF610 | 1 | 28.9 | Weakly correlated | |
| 24 | ZNF789 | 1 | 99.0 | Highly correlated | |
| 25 | ZNF33A | 1 | 99.0 | Highly correlated | |
| 26 | ZNF2 | 1 | 99.0 | Highly correlated | |
| 27 | ZNF28 | 1 | 28.9 | Weakly correlated | |
| 28 | ZNF320 | 1 | 28.9 | Weakly correlated | |
| 29 | ZNF331 | 1 | 94.0 | Moderately correlated | |
| 30 | ZNF597 | 1 | 94.0 | Moderately correlated | |
| 31 | ZNF879 | 1 | 99.0 | Highly correlated | |
| 32 | ZNF585A | 1 | 99.0 | Highly correlated | |
| 33 | ZNF264 | 1 | 99.0 | Highly correlated | |
| 34 | ZFP57 | 1 | 87.0 | Moderately correlated | |
| 35 | ZFP69 | 1 | 99.0 | Highly correlated | |
| 36 | ZFP90 | 1 | 99.0 | Highly correlated | |
| 37 | ZKSCAN5 | 1 | 160.0 | Weakly correlated | |
| 38 | ZNF101 | 1 | 43.0 | Weakly correlated | |
| 39 | ZNF248 | 1 | 99.0 | Highly correlated | |
| 40 | ZNF354A | 1 | 99.0 | Highly correlated | |
| 41 | ZNF799 | 1 | 43.0 | Weakly correlated | |
| 42 | ZNF677 | 1 | 99.0 | Highly correlated | |
| 43 | ZNF41 | 1 | 99.0 | Highly correlated | |
| 44 | ZNF554 | 1 | 99.0 | Highly correlated | |
| 45 | ZNF695 | 1 | 28.9 | Weakly correlated | |
| 46 | ZNF324 | 1 | 99.0 | Highly correlated | |
| 47 | ZNF519 | 1 | 19.6 | Weakly correlated | |
| 48 | ZNF701 | 1 | 28.9 | Weakly correlated | |
| 49 | ZNF92 | 1 | 28.9 | Weakly correlated |
KZFPs Motif in Repeats Consensus
:
| # | KZFP name | KZFP age(Mya) | Time correlation with Repeats | |
|---|---|---|---|---|
| 1 | ZNF317 | 99.0 | Highly correlated |