ZRdb KZFP & Repeats
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LINE_L1MDA_5END

  • Name
    L1MDA_5END
  • Repbase
    L1MDA_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000290
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttaaaaataaagcgggagacttccgcttccgggaagatggagtagacgtacttttccctattcctcccgctaagtacaactaaaaaccctggacattatatataaaacaaacataagaagactctgaaaggtggagagaagaaggcagaccggctagggacctcgggacccgaggaacgacacggtggtgagttccctgggttttctttttgcctcatatatcccagacttggagctgaagaagccggcaacccggaaacgccaacgggcacagacaaaaaaagccccaacaaaagcctgctctctctagccaaaggaccaggaaaggggcagcctagcaagacagaaaacttttagacaataaccgctctactccagccaaacaccacagaaaaaactgtggccccacccccacccacgccagcaaaggccgagtggggagcctagacttccaccctcgccaggctgtaacgaggcgccccaacacccccgccggggtggtgtcagagaaggccgagtagggagccgggactttcatccccgccgggcggtaacgaggcatccancncccccaccggngtggtgtcagcggaggccangtggggagcctggacttccacccccacccggcagtaacgaggcgccccttcccctccccgctggggtggtgtcagnggaggccnagtggggagccnggacttccaccnccgcccggcggtaacgaggccacctcctcctctcaccggggtggtgtcagnggaggccnagtggagagtcaggactttcaccaccgcccagcagtaacgaggccacccccacnnagtgtcagtggaggccnagtggggagccggaactcccacccccgcccagcagtaacgaggagccccccccacctcgggtgtcaacggaggccgagtggggaacctggacttctacccccacctggcagtaacgaggcggcgcccctccccttcccctgccggagcggtgtcagaggaagccagctaaaacagaaggtttaaataagatccagagtctcataacataataccaaaatgtccaggtttcaatngaaaatcactcgtcataccaagaaccaggaagatctcaaactgaatgaaaaaagacaatcaacagatgccaacaccgagatgacagagatgttagaattatctgacaaagattttaaagcagccatcataaaaatgcttcaacgagcaattacgaacacgcttgaaacaaatgaaaaatagaaagtctcagcaaagaaatagaaagtctcagcaaagaaatagaagatataaagaagaaccaaatggaaattttagaactgaaaaatacaataaccgaaataaaaaactcantggatgggctcaacagcagaatggaggggacagaggaaagaatcagtgaactngaagatagaacaatagaaattacccaatctgaacaacagagagaaaatagactgaaaaaaaaaatgaacagagcctcagggacctgtgggactataacaaaagatctaacattcgtgtcatcggagtcccagaaggagaggagaaagagggcggggctgaaaaagtactcgaagaaataatggctgaaaacttcccaaatttggcaaaagacataaacctacagattcaagaagctgagcgaaccccaaacaggataaacccaaagaaatccacgccaagacacatcataatcaaacttctgaaaactaaagacaaagaaaaaaaatcttgaaagcagcnagagagaaacgacaccttacctataggggaaaaacaattcgaatgacagcggatttctcatcagaaaccatggaggccagaaggaagtggcacaacatttttcaagtgctgaaagaaaagaactgtcaacccagaattctatatccagcgaaaatatccttcaggaatgaaggggaaatcaagacattctcagatgaaggaaaactaagagaatttgtcgccagcagacctaccctaaaagaatggctaaaggaagttctctaaacagaaaggaaatgataaaagaaggaatcttggaacatcaggaaggaagaaagaacanagtaagcaaaaatatgggtaaatacaatagactttccttctcctcttgagttttctaaattatgtttgacggttgaagcaaaaattataacaccgtctgatgtggttctaaatgtatgtagaggaaatatttaagacaattatattataaatgggggagggtaaagggacntaaagggaggtaaggtttctacacttcactcgaactggtaaaatgncgacaccagtagactgtgataagttatgtatatataatgtaatacctagagcaaccactaaaaaagctatacaaagagatacactcaaaaacactatagataaatcaaaatggaattctaaaaaatgttcaagtaacccacaggaaggcaggaaaaagaaaacagagaaacgaaaaacagaacaaacagaaaacaaaaaataaaatggcagacttaagccctaacatatcaataattacattaaatgtaaatggtctaaatacaccaattaaaagacagagattggcagagtggattaaaaaacatgacccaactatatgctgtctacaagaaactcacttcaaatataacgat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 554 99.0 Highly correlated
2 ZNF317 365 99.0 Highly correlated
3 ZIM3 238 87.0 Moderately correlated
4 ZNF558 196 99.0 Highly correlated
5 ZNF136 165 74.0 Weakly correlated
6 ZNF680 108 28.9 Weakly correlated
7 ZNF766 94 43.0 Weakly correlated
8 ZNF354A 78 99.0 Highly correlated
9 ZNF160 65 74.0 Weakly correlated
10 ZNF263 57 180.0 Weakly correlated
11 ZNF490 57 43.0 Weakly correlated
12 ZNF394 53 99.0 Highly correlated
13 ZNF723 52 15.2 Weakly correlated
14 ZNF793 50 99.0 Highly correlated
15 ZNF705B 46 28.9 Weakly correlated
16 ZNF679 41 28.9 Weakly correlated
17 ZNF534 35 19.6 Weakly correlated
18 ZFP37 32 99.0 Highly correlated
19 ZNF182 32 99.0 Highly correlated
20 ZNF248 31 99.0 Highly correlated
21 ZNF585A 28 99.0 Highly correlated
22 ZNF18 27 160.0 Weakly correlated
23 ZNF479 27 6.4 Weakly correlated
24 ZNF133 25 99.0 Highly correlated
25 ZNF251 25 94.0 Moderately correlated
26 ZNF589 25 28.9 Weakly correlated
27 ZNF324 22 99.0 Highly correlated
28 ZNF610 22 28.9 Weakly correlated
29 ZFP28 21 99.0 Highly correlated
30 ZKSCAN1 21 160.0 Weakly correlated
31 ZNF287 21 99.0 Highly correlated
32 ZNF2 20 99.0 Highly correlated
33 ZNF175 19 94.0 Moderately correlated
34 ZNF705D 19 28.9 Weakly correlated
35 ZNF28 18 28.9 Weakly correlated
36 ZNF202 16 160.0 Weakly correlated
37 ZNF486 16 8.6 Weakly correlated
38 ZNF554 16 99.0 Highly correlated
39 ZNF92 16 28.9 Weakly correlated
40 ZNF320 15 28.9 Weakly correlated
41 ZFP69B 14 99.0 Highly correlated
42 ZFP57 13 87.0 Moderately correlated
43 ZNF101 13 43.0 Weakly correlated
44 ZNF274 13 99.0 Highly correlated
45 ZNF282 13 319.0 Weakly correlated
46 ZNF471 13 94.0 Moderately correlated
47 ZNF75D 13 94.0 Moderately correlated
48 ZNF879 13 99.0 Highly correlated
49 ZNF584 12 99.0 Highly correlated
50 ZNF140 11 99.0 Highly correlated
51 ZNF547 11 74.0 Weakly correlated
52 ZNF707 11 74.0 Weakly correlated
53 ZNF468 10 28.9 Weakly correlated
54 ZNF506 10 28.9 Weakly correlated
55 ZNF528 10 43.0 Weakly correlated
56 ZFP90 9 99.0 Highly correlated
57 ZNF197 9 99.0 Highly correlated
58 ZNF549 9 87.0 Moderately correlated
59 ZNF169 8 94.0 Moderately correlated
60 ZNF519 8 19.6 Weakly correlated
61 ZNF677 8 99.0 Highly correlated
62 ZNF786 8 99.0 Highly correlated
63 ZFP69 7 99.0 Highly correlated
64 ZNF613 7 99.0 Highly correlated
65 ZNF823 7 43.0 Weakly correlated
66 ZKSCAN8 6 160.0 Weakly correlated
67 ZNF257 6 0.0 Weakly correlated
68 ZNF26 6 99.0 Highly correlated
69 ZNF585B 6 99.0 Highly correlated
70 ZNF674 6 99.0 Highly correlated
71 ZNF682 6 28.9 Weakly correlated
72 ZNF792 6 94.0 Moderately correlated
73 ZNF84 6 99.0 Highly correlated
74 ZNF141 5 43.0 Weakly correlated
75 ZNF331 5 94.0 Moderately correlated
76 ZNF441 5 43.0 Weakly correlated
77 ZNF778 5 74.0 Weakly correlated
78 ZFP30 4 99.0 Highly correlated
79 ZNF230 4 28.9 Weakly correlated
80 ZNF334 4 99.0 Highly correlated
81 ZNF425 4 94.0 Moderately correlated
82 ZNF485 4 94.0 Moderately correlated
83 ZNF510 4 99.0 Highly correlated
84 ZNF560 4 43.0 Weakly correlated
85 ZNF597 4 94.0 Moderately correlated
86 ZNF808 4 19.6 Weakly correlated
87 ZNF273 3 28.9 Weakly correlated
88 ZNF284 3 43.0 Weakly correlated
89 ZNF337 3 43.0 Weakly correlated
90 ZNF43 3 43.0 Weakly correlated
91 ZNF440 3 28.9 Weakly correlated
92 ZNF570 3 99.0 Highly correlated
93 ZNF700 3 28.9 Weakly correlated
94 ZNF701 3 28.9 Weakly correlated
95 ZNF81 3 99.0 Highly correlated
96 ZNF878 3 43.0 Weakly correlated
97 ZFP82 2 99.0 Highly correlated
98 ZNF10 2 99.0 Highly correlated
99 ZNF114 2 28.9 Weakly correlated
100 ZNF189 2 99.0 Highly correlated
101 ZNF211 2 94.0 Moderately correlated
102 ZNF222 2 43.0 Weakly correlated
103 ZNF33A 2 99.0 Highly correlated
104 ZNF350 2 99.0 Highly correlated
105 ZNF41 2 99.0 Highly correlated
106 ZNF433 2 43.0 Weakly correlated
107 ZNF483 2 99.0 Highly correlated
108 ZNF559 2 74.0 Weakly correlated
109 ZNF573 2 94.0 Moderately correlated
110 ZNF641 2 99.0 Highly correlated
111 ZNF716 2 19.6 Weakly correlated
112 ZNF735 2 28.9 Weakly correlated
113 ZNF799 2 43.0 Weakly correlated
114 ZNF845 2 28.9 Weakly correlated
115 ZNF8 2 99.0 Highly correlated
116 ZNF93 2 8.6 Weakly correlated
117 ZFP14 1 99.0 Highly correlated
118 ZKSCAN5 1 160.0 Weakly correlated
119 ZNF100 1 28.9 Weakly correlated
120 ZNF124 1 43.0 Weakly correlated
121 ZNF12 1 99.0 Highly correlated
122 ZNF177 1 94.0 Moderately correlated
123 ZNF17 1 69.0 Weakly correlated
124 ZNF224 1 69.0 Weakly correlated
125 ZNF264 1 99.0 Highly correlated
126 ZNF283 1 99.0 Highly correlated
127 ZNF343 1 74.0 Weakly correlated
128 ZNF398 1 99.0 Highly correlated
129 ZNF417 1 28.9 Weakly correlated
130 ZNF418 1 43.0 Weakly correlated
131 ZNF429 1 28.9 Weakly correlated
132 ZNF442 1 43.0 Weakly correlated
133 ZNF454 1 99.0 Highly correlated
134 ZNF480 1 43.0 Weakly correlated
135 ZNF514 1 94.0 Moderately correlated
136 ZNF530 1 28.9 Weakly correlated
137 ZNF555 1 94.0 Moderately correlated
138 ZNF557 1 15.2 Weakly correlated
139 ZNF561 1 43.0 Weakly correlated
140 ZNF562 1 28.9 Weakly correlated
141 ZNF563 1 28.9 Weakly correlated
142 ZNF567 1 99.0 Highly correlated
143 ZNF583 1 99.0 Highly correlated
144 ZNF586 1 43.0 Weakly correlated
145 ZNF605 1 99.0 Highly correlated
146 ZNF611 1 19.6 Weakly correlated
147 ZNF627 1 74.0 Weakly correlated
148 ZNF667 1 99.0 Highly correlated
149 ZNF671 1 94.0 Moderately correlated
150 ZNF675 1 8.6 Weakly correlated
151 ZNF681 1 28.9 Weakly correlated
152 ZNF684 1 99.0 Highly correlated
153 ZNF695 1 28.9 Weakly correlated
154 ZNF69 1 28.9 Weakly correlated
155 ZNF727 1 19.6 Weakly correlated
156 ZNF730 1 19.6 Weakly correlated
157 ZNF736 1 43.0 Weakly correlated
158 ZNF780A 1 43.0 Weakly correlated
159 ZNF789 1 99.0 Highly correlated
160 ZNF850 1 28.9 Weakly correlated
161 ZNF85 1 28.9 Weakly correlated
162 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 137 87.0 Moderately correlated
2 ZNF136 134 74.0 Weakly correlated
3 ZNF317 122 99.0 Highly correlated
4 ZNF558 85 99.0 Highly correlated
5 ZNF382 76 99.0 Highly correlated
6 ZNF160 64 74.0 Weakly correlated
7 ZNF354A 49 99.0 Highly correlated
8 ZNF680 45 28.9 Weakly correlated
9 ZNF490 42 43.0 Weakly correlated
10 ZNF723 32 15.2 Weakly correlated
11 ZNF248 24 99.0 Highly correlated
12 ZNF793 24 99.0 Highly correlated
13 ZNF263 23 180.0 Weakly correlated
14 ZNF534 18 19.6 Weakly correlated
15 ZNF766 18 43.0 Weakly correlated
16 ZNF585A 17 99.0 Highly correlated
17 ZNF287 13 99.0 Highly correlated
18 ZNF479 13 6.4 Weakly correlated
19 ZNF133 12 99.0 Highly correlated
20 ZNF28 11 28.9 Weakly correlated
21 ZNF879 11 99.0 Highly correlated
22 ZNF705B 9 28.9 Weakly correlated
23 ZFP28 8 99.0 Highly correlated
24 ZNF471 8 94.0 Moderately correlated
25 ZNF677 7 99.0 Highly correlated
26 ZNF705D 7 28.9 Weakly correlated
27 ZFP90 7 99.0 Highly correlated
28 ZNF140 7 99.0 Highly correlated
29 ZNF101 6 43.0 Weakly correlated
30 ZNF282 6 319.0 Weakly correlated
31 ZFP69 6 99.0 Highly correlated
32 ZNF707 5 74.0 Weakly correlated
33 ZNF320 4 28.9 Weakly correlated
34 ZNF75D 4 94.0 Moderately correlated
35 ZNF528 4 43.0 Weakly correlated
36 ZNF506 4 28.9 Weakly correlated
37 ZNF792 4 94.0 Moderately correlated
38 ZNF674 4 99.0 Highly correlated
39 ZNF554 3 99.0 Highly correlated
40 ZNF468 3 28.9 Weakly correlated
41 ZNF485 3 94.0 Moderately correlated
42 ZNF141 3 43.0 Weakly correlated
43 ZFP57 3 87.0 Moderately correlated
44 ZKSCAN1 3 160.0 Weakly correlated
45 ZNF549 3 87.0 Moderately correlated
46 ZNF337 3 43.0 Weakly correlated
47 ZNF84 3 99.0 Highly correlated
48 ZFP82 2 99.0 Highly correlated
49 ZNF10 2 99.0 Highly correlated
50 ZNF18 2 160.0 Weakly correlated
51 ZNF257 2 0.0 Weakly correlated
52 ZFP69B 2 99.0 Highly correlated
53 ZNF331 2 94.0 Moderately correlated
54 ZNF823 2 43.0 Weakly correlated
55 ZNF26 2 99.0 Highly correlated
56 ZNF394 2 99.0 Highly correlated
57 ZNF679 2 28.9 Weakly correlated
58 ZNF433 1 43.0 Weakly correlated
59 ZNF189 1 99.0 Highly correlated
60 ZNF695 1 28.9 Weakly correlated
61 ZNF202 1 160.0 Weakly correlated
62 ZNF2 1 99.0 Highly correlated
63 ZNF573 1 94.0 Moderately correlated
64 ZKSCAN8 1 160.0 Weakly correlated
65 ZNF611 1 19.6 Weakly correlated
66 ZNF273 1 28.9 Weakly correlated
67 ZFP37 1 99.0 Highly correlated
68 ZNF483 1 99.0 Highly correlated
69 ZFP14 1 99.0 Highly correlated
70 ZNF878 1 43.0 Weakly correlated
71 ZNF514 1 94.0 Moderately correlated
72 ZNF641 1 99.0 Highly correlated
73 ZNF675 1 8.6 Weakly correlated
74 ZNF684 1 99.0 Highly correlated
75 ZNF92 1 28.9 Weakly correlated
76 ZNF251 1 94.0 Moderately correlated
77 ZNF197 1 99.0 Highly correlated
78 ZNF324 1 99.0 Highly correlated
79 ZNF440 1 28.9 Weakly correlated
80 ZNF780A 1 43.0 Weakly correlated
81 ZNF716 1 19.6 Weakly correlated
82 ZNF211 1 94.0 Moderately correlated
83 ZNF667 1 99.0 Highly correlated
84 ZNF417 1 28.9 Weakly correlated
85 ZNF671 1 94.0 Moderately correlated
86 ZNF727 1 19.6 Weakly correlated
87 ZNF429 1 28.9 Weakly correlated
88 ZNF425 1 94.0 Moderately correlated
89 ZNF33A 1 99.0 Highly correlated
90 ZNF175 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Highly correlated
2 ZIM3 87.0 Moderately correlated
3 ZNF136 74.0 Weakly correlated
4 ZNF248 99.0 Highly correlated
5 ZNF263 180.0 Weakly correlated
6 ZNF28 28.9 Weakly correlated
7 ZNF317 99.0 Highly correlated
8 ZNF490 43.0 Weakly correlated
9 ZNF677 99.0 Highly correlated
10 ZNF680 28.9 Weakly correlated
11 ZNF793 99.0 Highly correlated