ZRdb KZFP & Repeats
...

LINE_L1MD3_3END

  • Name
    L1MD3_3END
  • Repbase
    L1MD3
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000289
Description :

This model only contains a partial 3' UTR reconstruction. Position~626-750 is derived from a MaLR LTR insertion (MLT1F1 subfamily).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cttgtatccagaatatataaagaactcttaaaactcaacaataaaaaaacaaacaacccaattaaaaaatgggcaaaagatctgaacagacacttcaccaaagaagatatacagatggcaaataagcacatgaaaagatgctcaacatcatnngtcattagggaaatgcaaattaaaaccacaatgagataccactacacacctattagaatggctaaaatcaaaaanactgacaataccaagtgctggcgaggatgtggagcaacnggaactctcatncattgctggtgggaatgcaaaatggtacagccactttggaaaacagtttggcagtttcttanaaagttaaacatacanttaccatatgacccagcaattncactcctaggtatttacccaagngaantgaaaacntatgtccacacaaaaacctgtacacgaatgtttatagcagctttattcataatngccaaaanctggaaacaaccnagatgtccntcaacaggtgaatggataaacaaactgtggtacatccatacaatggaatactattcagcaataaaaaggaatgaactactgatacatgnaacgacatggatgaatctcaaatgcatnttgctaagtgaaagaagccagnctnaaaaggctacatactgtatgattccatttatatgacattctggaaaaggcaaaactatagagacagaaaacagatcagtggttgccaggggttgagagatgggaagtggggatgactgcaaaggcgaagcacaggggattttttagggtgatgaaactattctgtatannntnttctgtatgatactgtggtggtggatacatgacnctatgcatttgtcaaaacccacagaacttgtcaaaacccacagaactttacagcacaaagagtgaactttantgtatgcaaattttaaaaaatcanttaggangtcgggggatcccaggatggaatgcagactgtgacaaangaatctaactgtattacaaatgtatganacaacctcactgaagggggtgggggaaaaaggtgctgacctaagtaactttggaaatgagtggannctgtaaggctaaagacaaaaagaactgtacataaacactgtactctagttggtaaanttgtttctcacaggggtacgggttagcaattctgaaactactntacatgtatantaggattgaacaaataagtaaatgnattgnagataatgggagccaggtttctcactgtcggagaaggaagttacaaataagcaaggggggaaggctagaatgaaccctgtggtgctggattagagtcggagatatcgtatgaactcatgtttattttanacggatatacaaatananatgtaaatatacatgggttagtatacacatatacatacatatatttcctagctctgtccgctgagagggcctagaagcagtgacaccccagtagcaacgagcacacctagcgcccagatcttggtttctaaataccattctccaataaaaggaaccagggctccttggagaaatggctgattctagggctggggcagggaaaatacaagatgagcctggagcatcttgtagtgccagaaagtaaggaagtgctcaaaaacaaaaggatgggggcatgtcaaaaggacacaggagccaacctgaaagagctcccaatggccaaagctggaacaatttgagcaacaaaataaataacgatagtattggattataacccaaagnataaaataaatatccatgagtccatactgatataaataaatgattgaataaataaataggggagaagggaaacaaatcttccttacagaagaattccaantaataaatgtagaaggaatgagggaaatagaaaatcaccattagaacaccacagtaataattgctgcaggcaagatccaccgatgaatgctaaaattagtgggcgaaactttaaggagaaacaggatatttgcatagcctcaaagtatctcccccaaaatatttattaattactgtggtggttttaacatatgtccacaaattctttgatactcctccctccaggaggtggagcttaattcccctccccttgagtgtgggctggacttagtgactcgcttccaaagaatagagtatggaaagggaaaaatagtaactttacagtggagaaacctggcagacaccaccttaaccaagtgatcaaggttaacatcaccagtgataagtcatgttgatatcatgtaccccctgatatgatgcgatgagaagggcacttcacctctgtggtattcttcccnaaaacccataaccccagtctaatcatgagaaaacatcagacaaacccaaattgagggacattctacaaaatacctgaccagtactcttcaaaantgtcaaggtcatgaaaaacaaggaaagactgagaaactgtcacagaccggaggagactaaggagacatgacgactaaatgcaatgtggtatcctggattggatcctggaacagaaaaaggacattagtggaaaaactggtgaaatccgaataaagtctgnagtttagttaatagtantgtaccaatgttaatttcttagttttgacaaatgtaccatggttatgtaagatgttaacattaggggaagctgggtgaagggtatacgggaactctctgtactatctttgcaacttttctgtaaatctaaaattattccaaaataaaaagtttatttaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 243 99.0 Highly correlated
2 ZNF766 72 43.0 Weakly correlated
3 ZNF680 67 28.9 Weakly correlated
4 ZNF317 57 99.0 Highly correlated
5 ZNF394 54 99.0 Highly correlated
6 ZIM3 46 87.0 Moderately correlated
7 ZNF263 44 180.0 Weakly correlated
8 ZFP37 35 99.0 Highly correlated
9 ZNF705B 33 28.9 Weakly correlated
10 ZNF589 32 28.9 Weakly correlated
11 ZNF175 29 94.0 Moderately correlated
12 ZNF251 27 94.0 Moderately correlated
13 ZNF605 26 99.0 Highly correlated
14 ZNF2 25 99.0 Highly correlated
15 ZNF101 24 43.0 Weakly correlated
16 ZNF197 24 99.0 Highly correlated
17 ZNF679 24 28.9 Weakly correlated
18 ZNF558 23 99.0 Highly correlated
19 ZNF723 23 15.2 Weakly correlated
20 ZNF584 22 99.0 Highly correlated
21 ZNF705D 22 28.9 Weakly correlated
22 ZNF92 22 28.9 Weakly correlated
23 ZNF534 21 19.6 Weakly correlated
24 ZKSCAN8 20 160.0 Weakly correlated
25 ZKSCAN1 18 160.0 Weakly correlated
26 ZNF8 17 99.0 Highly correlated
27 ZFP69B 16 99.0 Highly correlated
28 ZNF324 16 99.0 Highly correlated
29 ZNF479 16 6.4 Weakly correlated
30 ZNF554 15 99.0 Highly correlated
31 ZNF248 14 99.0 Highly correlated
32 ZNF529 14 99.0 Highly correlated
33 ZFP28 13 99.0 Highly correlated
34 ZFP57 11 87.0 Moderately correlated
35 ZNF18 11 160.0 Weakly correlated
36 ZNF610 11 28.9 Weakly correlated
37 ZNF140 10 99.0 Highly correlated
38 ZNF485 10 94.0 Moderately correlated
39 ZNF701 9 28.9 Weakly correlated
40 ZNF792 9 94.0 Moderately correlated
41 ZNF133 8 99.0 Highly correlated
42 ZNF585A 8 99.0 Highly correlated
43 ZNF136 7 74.0 Weakly correlated
44 ZNF354A 7 99.0 Highly correlated
45 ZNF506 7 28.9 Weakly correlated
46 ZNF793 7 99.0 Highly correlated
47 ZNF160 6 74.0 Weakly correlated
48 ZNF30 6 94.0 Moderately correlated
49 ZNF486 6 8.6 Weakly correlated
50 ZNF490 6 43.0 Weakly correlated
51 ZNF597 6 94.0 Moderately correlated
52 ZNF182 5 99.0 Highly correlated
53 ZNF26 5 99.0 Highly correlated
54 ZNF28 5 28.9 Weakly correlated
55 ZNF528 5 43.0 Weakly correlated
56 ZNF75D 5 94.0 Moderately correlated
57 ZNF823 5 43.0 Weakly correlated
58 ZFP69 4 99.0 Highly correlated
59 ZNF169 4 94.0 Moderately correlated
60 ZNF257 4 0.0 Weakly correlated
61 ZNF320 4 28.9 Weakly correlated
62 ZNF441 4 43.0 Weakly correlated
63 ZNF510 4 99.0 Highly correlated
64 ZNF682 4 28.9 Weakly correlated
65 ZNF735 4 28.9 Weakly correlated
66 ZNF274 3 99.0 Highly correlated
67 ZNF287 3 99.0 Highly correlated
68 ZNF429 3 28.9 Weakly correlated
69 ZNF547 3 74.0 Weakly correlated
70 ZNF567 3 99.0 Highly correlated
71 ZNF677 3 99.0 Highly correlated
72 ZNF695 3 28.9 Weakly correlated
73 ZNF707 3 74.0 Weakly correlated
74 ZNF816 3 28.9 Weakly correlated
75 ZNF84 3 99.0 Highly correlated
76 ZNF85 3 28.9 Weakly correlated
77 ZNF879 3 99.0 Highly correlated
78 ZFP30 2 99.0 Highly correlated
79 ZNF141 2 43.0 Weakly correlated
80 ZNF225 2 74.0 Weakly correlated
81 ZNF264 2 99.0 Highly correlated
82 ZNF283 2 99.0 Highly correlated
83 ZNF331 2 94.0 Moderately correlated
84 ZNF43 2 43.0 Weakly correlated
85 ZNF440 2 28.9 Weakly correlated
86 ZNF471 2 94.0 Moderately correlated
87 ZNF549 2 87.0 Moderately correlated
88 ZNF671 2 94.0 Moderately correlated
89 ZNF786 2 99.0 Highly correlated
90 ZNF81 2 99.0 Highly correlated
91 ZFP82 1 99.0 Highly correlated
92 ZNF157 1 99.0 Highly correlated
93 ZNF202 1 160.0 Weakly correlated
94 ZNF224 1 69.0 Weakly correlated
95 ZNF284 1 43.0 Weakly correlated
96 ZNF337 1 43.0 Weakly correlated
97 ZNF34 1 99.0 Highly correlated
98 ZNF425 1 94.0 Moderately correlated
99 ZNF433 1 43.0 Weakly correlated
100 ZNF436 1 180.0 Weakly correlated
101 ZNF44 1 43.0 Weakly correlated
102 ZNF468 1 28.9 Weakly correlated
103 ZNF519 1 19.6 Weakly correlated
104 ZNF530 1 28.9 Weakly correlated
105 ZNF543 1 99.0 Highly correlated
106 ZNF573 1 94.0 Moderately correlated
107 ZNF585B 1 99.0 Highly correlated
108 ZNF616 1 43.0 Weakly correlated
109 ZNF641 1 99.0 Highly correlated
110 ZNF675 1 8.6 Weakly correlated
111 ZNF716 1 19.6 Weakly correlated
112 ZNF730 1 19.6 Weakly correlated
113 ZNF763 1 15.2 Weakly correlated
114 ZNF778 1 74.0 Weakly correlated
115 ZNF780A 1 43.0 Weakly correlated
116 ZNF808 1 19.6 Weakly correlated
117 ZNF850 1 28.9 Weakly correlated
118 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF605 23 99.0 Highly correlated
2 ZIM3 20 87.0 Moderately correlated
3 ZNF680 16 28.9 Weakly correlated
4 ZNF251 15 94.0 Moderately correlated
5 ZNF723 13 15.2 Weakly correlated
6 ZNF382 11 99.0 Highly correlated
7 ZNF766 10 43.0 Weakly correlated
8 ZNF8 10 99.0 Highly correlated
9 ZNF101 9 43.0 Weakly correlated
10 ZNF534 8 19.6 Weakly correlated
11 ZNF263 8 180.0 Weakly correlated
12 ZNF248 8 99.0 Highly correlated
13 ZNF317 7 99.0 Highly correlated
14 ZNF485 7 94.0 Moderately correlated
15 ZNF705D 6 28.9 Weakly correlated
16 ZNF585A 6 99.0 Highly correlated
17 ZNF479 6 6.4 Weakly correlated
18 ZNF705B 6 28.9 Weakly correlated
19 ZNF92 5 28.9 Weakly correlated
20 ZFP37 5 99.0 Highly correlated
21 ZNF558 5 99.0 Highly correlated
22 ZFP57 5 87.0 Moderately correlated
23 ZNF354A 4 99.0 Highly correlated
24 ZNF133 4 99.0 Highly correlated
25 ZFP28 4 99.0 Highly correlated
26 ZNF160 4 74.0 Weakly correlated
27 ZNF324 3 99.0 Highly correlated
28 ZNF816 3 28.9 Weakly correlated
29 ZNF554 3 99.0 Highly correlated
30 ZNF490 3 43.0 Weakly correlated
31 ZNF197 3 99.0 Highly correlated
32 ZNF75D 3 94.0 Moderately correlated
33 ZNF701 3 28.9 Weakly correlated
34 ZNF792 3 94.0 Moderately correlated
35 ZNF140 3 99.0 Highly correlated
36 ZNF169 2 94.0 Moderately correlated
37 ZNF793 2 99.0 Highly correlated
38 ZNF287 2 99.0 Highly correlated
39 ZNF823 2 43.0 Weakly correlated
40 ZNF679 2 28.9 Weakly correlated
41 ZNF677 2 99.0 Highly correlated
42 ZNF597 2 94.0 Moderately correlated
43 ZNF30 2 94.0 Moderately correlated
44 ZNF584 2 99.0 Highly correlated
45 ZNF81 2 99.0 Highly correlated
46 ZNF567 2 99.0 Highly correlated
47 ZNF84 2 99.0 Highly correlated
48 ZNF429 2 28.9 Weakly correlated
49 ZNF486 2 8.6 Weakly correlated
50 ZFP69 2 99.0 Highly correlated
51 ZNF735 2 28.9 Weakly correlated
52 ZNF136 1 74.0 Weakly correlated
53 ZFP69B 1 99.0 Highly correlated
54 ZNF433 1 43.0 Weakly correlated
55 ZNF543 1 99.0 Highly correlated
56 ZNF141 1 43.0 Weakly correlated
57 ZNF641 1 99.0 Highly correlated
58 ZKSCAN1 1 160.0 Weakly correlated
59 ZKSCAN8 1 160.0 Weakly correlated
60 ZNF26 1 99.0 Highly correlated
61 ZFP82 1 99.0 Highly correlated
62 ZNF34 1 99.0 Highly correlated
63 ZNF225 1 74.0 Weakly correlated
64 ZNF2 1 99.0 Highly correlated
65 ZNF716 1 19.6 Weakly correlated
66 ZNF589 1 28.9 Weakly correlated
67 ZNF394 1 99.0 Highly correlated
68 ZNF44 1 43.0 Weakly correlated
69 ZNF471 1 94.0 Moderately correlated
70 ZNF549 1 87.0 Moderately correlated
71 ZNF506 1 28.9 Weakly correlated
72 ZNF28 1 28.9 Weakly correlated
73 ZNF695 1 28.9 Weakly correlated
74 ZNF879 1 99.0 Highly correlated
75 ZNF573 1 94.0 Moderately correlated
76 ZNF175 1 94.0 Moderately correlated
77 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF248 99.0 Highly correlated
2 ZNF251 94.0 Moderately correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF605 99.0 Highly correlated
6 ZNF680 28.9 Weakly correlated