ZRdb KZFP & Repeats
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LINE_L1MD2_3END

  • Name
    L1MD2_3END
  • Repbase
    L1MD2
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000287
Description :

ORF2 ends at bp ~675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctngtatctagaatatataaagaactctcaaaactcaacagtaaaaaaacaaacaatccaattagaaaatgggcaaaagacatgaacagacatttcaccgaagaggatatacagatggcaaataagcacatgaaaagatgttcaacatcattagccattagggaaatgcaaattaaaaccacaatgagatatcactacacacctatcagaatggctaaaataaaaaatagtgacaacaccaaatgctggcgaggatgcggagaaactggatcactcatacattgctggtgggaatgtaaaatggtacagccactctggaaaacagtttggcagtttcttataaaactaaacatgcanttaccatacgacccagcaattgcactcttgggcatttatcccagagaaatgaaaacttatgttcacacaaaaacctgtacacgaatgttcatagcagctttattcgtaatagccaaaaactggaaacaacccaaatgtccttcaacgggtgaatggttaaacaaactgtggtacatccataccatggaatactactcagcaataaaaaggaacgaactattgatacacgcaacaacttggatggatctcaagggaattatgctgagtgaaaaaagccaatctcaaaaggttacatactgtatgattccatttatataacattcttgaaatgacaaaattatagagatggagaacagattagtggttgccaggggttagggatgggggtggngngggggaagggaggtgggtgtggctataaaagggcagcacgagggatccttgtggtgatggaacngttctgtatcttgactgtggtggtggntacacgaatctacacatgtgataaaattgcatagaactaaatacacacacacacacatgagtacangtaaaactggngaaatctgaataagatcggtggattgtatcaatgtcaatttcctggttntgatattgtactatagttntgcaagatgttaccattgggggaaactgggtgaagggtacacgggatctctctgtattatttcttacaactncatgtgaatctacaattatctcaaaataaaaagtttaatttaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 844 99.0 Highly correlated
2 ZNF317 178 99.0 Highly correlated
3 ZNF8 147 99.0 Highly correlated
4 ZNF680 142 28.9 Weakly correlated
5 ZIM3 134 87.0 Moderately correlated
6 ZNF766 119 43.0 Weakly correlated
7 ZNF263 105 180.0 Weakly correlated
8 ZNF394 98 99.0 Highly correlated
9 ZNF251 81 94.0 Moderately correlated
10 ZNF558 77 99.0 Highly correlated
11 ZNF248 74 99.0 Highly correlated
12 ZNF18 71 160.0 Weakly correlated
13 ZNF679 63 28.9 Weakly correlated
14 ZNF705B 60 28.9 Weakly correlated
15 ZNF723 57 15.2 Weakly correlated
16 ZFP37 49 99.0 Highly correlated
17 ZNF2 49 99.0 Highly correlated
18 ZNF175 48 94.0 Moderately correlated
19 ZNF486 47 8.6 Weakly correlated
20 ZFP69B 41 99.0 Highly correlated
21 ZNF324 41 99.0 Highly correlated
22 ZNF101 36 43.0 Weakly correlated
23 ZNF705D 36 28.9 Weakly correlated
24 ZNF92 36 28.9 Weakly correlated
25 ZNF534 35 19.6 Weakly correlated
26 ZNF589 32 28.9 Weakly correlated
27 ZNF84 31 99.0 Highly correlated
28 ZNF136 30 74.0 Weakly correlated
29 ZNF479 30 6.4 Weakly correlated
30 ZKSCAN1 29 160.0 Weakly correlated
31 ZNF529 29 99.0 Highly correlated
32 ZNF554 29 99.0 Highly correlated
33 ZFP28 28 99.0 Highly correlated
34 ZNF133 28 99.0 Highly correlated
35 ZNF490 28 43.0 Weakly correlated
36 ZNF610 26 28.9 Weakly correlated
37 ZNF793 25 99.0 Highly correlated
38 ZNF197 24 99.0 Highly correlated
39 ZNF584 23 99.0 Highly correlated
40 ZNF182 22 99.0 Highly correlated
41 ZKSCAN8 21 160.0 Weakly correlated
42 ZNF160 21 74.0 Weakly correlated
43 ZNF257 21 0.0 Weakly correlated
44 ZNF597 21 94.0 Moderately correlated
45 ZNF320 20 28.9 Weakly correlated
46 ZFP57 19 87.0 Moderately correlated
47 ZNF354A 19 99.0 Highly correlated
48 ZNF701 18 28.9 Weakly correlated
49 ZNF140 17 99.0 Highly correlated
50 ZNF75D 15 94.0 Moderately correlated
51 ZNF274 13 99.0 Highly correlated
52 ZNF81 13 99.0 Highly correlated
53 ZNF441 12 43.0 Weakly correlated
54 ZNF485 12 94.0 Moderately correlated
55 ZNF585A 12 99.0 Highly correlated
56 ZNF735 12 28.9 Weakly correlated
57 ZNF26 11 99.0 Highly correlated
58 ZNF528 11 43.0 Weakly correlated
59 ZNF585B 11 99.0 Highly correlated
60 ZNF287 10 99.0 Highly correlated
61 ZNF471 10 94.0 Moderately correlated
62 ZNF808 10 19.6 Weakly correlated
63 ZNF202 9 160.0 Weakly correlated
64 ZNF425 9 94.0 Moderately correlated
65 ZNF792 9 94.0 Moderately correlated
66 ZFP90 8 99.0 Highly correlated
67 ZNF141 8 43.0 Weakly correlated
68 ZNF28 8 28.9 Weakly correlated
69 ZNF547 8 74.0 Weakly correlated
70 ZNF695 8 28.9 Weakly correlated
71 ZNF786 8 99.0 Highly correlated
72 ZNF823 8 43.0 Weakly correlated
73 ZFP69 7 99.0 Highly correlated
74 ZNF506 7 28.9 Weakly correlated
75 ZNF677 7 99.0 Highly correlated
76 ZNF707 7 74.0 Weakly correlated
77 ZNF282 6 319.0 Weakly correlated
78 ZNF429 6 28.9 Weakly correlated
79 ZNF519 6 19.6 Weakly correlated
80 ZNF563 6 28.9 Weakly correlated
81 ZNF230 5 28.9 Weakly correlated
82 ZNF264 5 99.0 Highly correlated
83 ZNF440 5 28.9 Weakly correlated
84 ZNF641 5 99.0 Highly correlated
85 ZNF184 4 99.0 Highly correlated
86 ZNF273 4 28.9 Weakly correlated
87 ZNF284 4 43.0 Weakly correlated
88 ZNF331 4 94.0 Moderately correlated
89 ZNF347 4 43.0 Weakly correlated
90 ZNF350 4 99.0 Highly correlated
91 ZNF354C 4 99.0 Highly correlated
92 ZNF41 4 99.0 Highly correlated
93 ZNF549 4 87.0 Moderately correlated
94 ZNF567 4 99.0 Highly correlated
95 ZNF674 4 99.0 Highly correlated
96 ZNF879 4 99.0 Highly correlated
97 ZNF91 4 6.0 Weakly correlated
98 ZNF33A 3 99.0 Highly correlated
99 ZNF445 3 99.0 Highly correlated
100 ZNF44 3 43.0 Weakly correlated
101 ZNF468 3 28.9 Weakly correlated
102 ZNF559 3 74.0 Weakly correlated
103 ZNF671 3 94.0 Moderately correlated
104 ZNF93 3 8.6 Weakly correlated
105 ZNF100 2 28.9 Weakly correlated
106 ZNF169 2 94.0 Moderately correlated
107 ZNF17 2 69.0 Weakly correlated
108 ZNF222 2 43.0 Weakly correlated
109 ZNF333 2 99.0 Highly correlated
110 ZNF334 2 99.0 Highly correlated
111 ZNF483 2 99.0 Highly correlated
112 ZNF560 2 43.0 Weakly correlated
113 ZNF682 2 28.9 Weakly correlated
114 ZNF716 2 19.6 Weakly correlated
115 ZNF778 2 74.0 Weakly correlated
116 ZNF789 2 99.0 Highly correlated
117 ZNF816 2 28.9 Weakly correlated
118 ZNF85 2 28.9 Weakly correlated
119 ZNF878 2 43.0 Weakly correlated
120 ZFP14 1 99.0 Highly correlated
121 ZKSCAN5 1 160.0 Weakly correlated
122 ZNF10 1 99.0 Highly correlated
123 ZNF135 1 94.0 Moderately correlated
124 ZNF157 1 99.0 Highly correlated
125 ZNF189 1 99.0 Highly correlated
126 ZNF30 1 94.0 Moderately correlated
127 ZNF436 1 180.0 Weakly correlated
128 ZNF43 1 43.0 Weakly correlated
129 ZNF460 1 74.0 Weakly correlated
130 ZNF480 1 43.0 Weakly correlated
131 ZNF510 1 99.0 Highly correlated
132 ZNF557 1 15.2 Weakly correlated
133 ZNF568 1 99.0 Highly correlated
134 ZNF573 1 94.0 Moderately correlated
135 ZNF578 1 15.2 Weakly correlated
136 ZNF582 1 99.0 Highly correlated
137 ZNF586 1 43.0 Weakly correlated
138 ZNF587 1 28.9 Weakly correlated
139 ZNF605 1 99.0 Highly correlated
140 ZNF613 1 99.0 Highly correlated
141 ZNF616 1 43.0 Weakly correlated
142 ZNF630 1 94.0 Moderately correlated
143 ZNF675 1 8.6 Weakly correlated
144 ZNF681 1 28.9 Weakly correlated
145 ZNF689 1 99.0 Highly correlated
146 ZNF705E 1 0.0 Weakly correlated
147 ZNF727 1 19.6 Weakly correlated
148 ZNF730 1 19.6 Weakly correlated
149 ZNF736 1 43.0 Weakly correlated
150 ZNF75A 1 94.0 Moderately correlated
151 ZNF780A 1 43.0 Weakly correlated
152 ZNF782 1 99.0 Highly correlated
153 ZNF799 1 43.0 Weakly correlated
154 ZNF7 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF8 113 99.0 Highly correlated
2 ZNF382 106 99.0 Highly correlated
3 ZIM3 66 87.0 Moderately correlated
4 ZNF248 65 99.0 Highly correlated
5 ZNF251 62 94.0 Moderately correlated
6 ZNF317 37 99.0 Highly correlated
7 ZNF723 30 15.2 Weakly correlated
8 ZNF680 29 28.9 Weakly correlated
9 ZNF84 28 99.0 Highly correlated
10 ZNF558 27 99.0 Highly correlated
11 ZNF490 21 43.0 Weakly correlated
12 ZNF136 19 74.0 Weakly correlated
13 ZNF263 19 180.0 Weakly correlated
14 ZNF92 18 28.9 Weakly correlated
15 ZNF705B 17 28.9 Weakly correlated
16 ZNF160 17 74.0 Weakly correlated
17 ZNF534 16 19.6 Weakly correlated
18 ZFP28 15 99.0 Highly correlated
19 ZNF705D 15 28.9 Weakly correlated
20 ZNF133 14 99.0 Highly correlated
21 ZNF101 14 43.0 Weakly correlated
22 ZNF793 14 99.0 Highly correlated
23 ZNF766 13 43.0 Weakly correlated
24 ZNF81 13 99.0 Highly correlated
25 ZNF479 11 6.4 Weakly correlated
26 ZNF354A 10 99.0 Highly correlated
27 ZNF735 10 28.9 Weakly correlated
28 ZNF585A 9 99.0 Highly correlated
29 ZNF75D 9 94.0 Moderately correlated
30 ZNF486 8 8.6 Weakly correlated
31 ZNF485 7 94.0 Moderately correlated
32 ZNF324 7 99.0 Highly correlated
33 ZNF140 7 99.0 Highly correlated
34 ZNF26 7 99.0 Highly correlated
35 ZFP69 6 99.0 Highly correlated
36 ZFP90 6 99.0 Highly correlated
37 ZNF701 6 28.9 Weakly correlated
38 ZFP57 6 87.0 Moderately correlated
39 ZNF677 5 99.0 Highly correlated
40 ZNF264 4 99.0 Highly correlated
41 ZNF202 4 160.0 Weakly correlated
42 ZNF792 4 94.0 Moderately correlated
43 ZNF18 4 160.0 Weakly correlated
44 ZNF554 4 99.0 Highly correlated
45 ZNF471 4 94.0 Moderately correlated
46 ZNF141 4 43.0 Weakly correlated
47 ZNF823 4 43.0 Weakly correlated
48 ZNF287 3 99.0 Highly correlated
49 ZNF695 3 28.9 Weakly correlated
50 ZNF350 3 99.0 Highly correlated
51 ZNF597 3 94.0 Moderately correlated
52 ZNF320 3 28.9 Weakly correlated
53 ZNF506 3 28.9 Weakly correlated
54 ZFP37 3 99.0 Highly correlated
55 ZNF641 2 99.0 Highly correlated
56 ZNF2 2 99.0 Highly correlated
57 ZNF468 2 28.9 Weakly correlated
58 ZNF257 2 0.0 Weakly correlated
59 ZNF354C 2 99.0 Highly correlated
60 ZNF584 2 99.0 Highly correlated
61 ZNF789 2 99.0 Highly correlated
62 ZNF879 2 99.0 Highly correlated
63 ZNF175 2 94.0 Moderately correlated
64 ZNF197 2 99.0 Highly correlated
65 ZKSCAN8 2 160.0 Weakly correlated
66 ZNF679 2 28.9 Weakly correlated
67 ZNF610 2 28.9 Weakly correlated
68 ZNF567 2 99.0 Highly correlated
69 ZNF589 2 28.9 Weakly correlated
70 ZNF28 2 28.9 Weakly correlated
71 ZNF33A 1 99.0 Highly correlated
72 ZNF394 1 99.0 Highly correlated
73 ZNF671 1 94.0 Moderately correlated
74 ZNF519 1 19.6 Weakly correlated
75 ZNF282 1 319.0 Weakly correlated
76 ZNF716 1 19.6 Weakly correlated
77 ZNF816 1 28.9 Weakly correlated
78 ZFP14 1 99.0 Highly correlated
79 ZNF568 1 99.0 Highly correlated
80 ZNF557 1 15.2 Weakly correlated
81 ZNF429 1 28.9 Weakly correlated
82 ZNF605 1 99.0 Highly correlated
83 ZNF7 1 99.0 Highly correlated
84 ZNF41 1 99.0 Highly correlated
85 ZNF10 1 99.0 Highly correlated
86 ZNF483 1 99.0 Highly correlated
87 ZNF674 1 99.0 Highly correlated
88 ZNF707 1 74.0 Weakly correlated
89 ZNF184 1 99.0 Highly correlated
90 ZNF347 1 43.0 Weakly correlated
91 ZFP69B 1 99.0 Highly correlated
92 ZNF440 1 28.9 Weakly correlated
93 ZNF585B 1 99.0 Highly correlated
94 ZNF528 1 43.0 Weakly correlated
95 ZNF547 1 74.0 Weakly correlated
96 ZNF549 1 87.0 Moderately correlated
97 ZNF573 1 94.0 Moderately correlated
98 ZNF169 1 94.0 Moderately correlated
99 ZNF274 1 99.0 Highly correlated
100 ZNF563 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF248 99.0 Highly correlated
2 ZNF251 94.0 Moderately correlated
3 ZNF317 99.0 Highly correlated
4 ZNF382 99.0 Highly correlated
5 ZNF479 6.4 Weakly correlated
6 ZNF486 8.6 Weakly correlated
7 ZNF680 28.9 Weakly correlated
8 ZNF701 28.9 Weakly correlated
9 ZNF766 43.0 Weakly correlated
10 ZNF84 99.0 Highly correlated
11 ZNF92 28.9 Weakly correlated