ZRdb KZFP & Repeats
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LINE_L1MD1_3END

  • Name
    L1MD1_3END
  • Repbase
    L1MD1
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000286
Description :

ORF2 ends at bp ~675
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctagtatctagaatatataaagaactctcaaaactcaacagtaaaaaaacaaacaatccaattagaaaatgggcaaaagacatgaagagacatttcaccgaagaggatatacagatggcaaataagcacatgaaaagatgttcaacatcattagccattagggaaatgcaaattaaaaccacaatgagatatcactacacacctatcagaatggctaaaataaaaaatagtgacaacaccaaatgctggcgaggatgcggagaaactggatcactcatacattgctggtgggaatgtaaaatggtacagccactctggaaaacagtttggcagtttcttaaaaaactaaacatgcaactaccatacgacccagcaattgcactcctgggcatttatcccagagaaatgaaaacttatgttcacacaaaaacctgtacacgaatgtttatagcagctttattcgtaatagccaaaaactggaaacaacccagatgtccttcaacgggtgaatggttaaacaaactgtggtacatccataccatggaatactactcagcaataaaaaggaacgaactattgatacacgcaacaacctggatgaatctccagagaattatgctgagtgaaaaaagccaatcccaaaaggttacatactgtatgattccatttatataacattcttgaaatgacaaaattatagaaatggagaacagattagtggttgccaggggttaaggaggggggtgggggcgggagggaagtgggtgtggctataaaagggcaacatgagggatccttgtggtgatggaaatgttctgtatcttgactgtatcaatgtcaatatcctggttgtgatattgtactatagttttgcaagatgttaccattgggggaaactgggtaaagggtacacgggatctctctgtattatttcttacaactgcatgtgaatctacaattatctcaaaataaaaagtttaatttaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 684 99.0 Highly correlated
2 ZNF317 153 99.0 Highly correlated
3 ZIM3 103 87.0 Moderately correlated
4 ZNF680 85 28.9 Weakly correlated
5 ZNF248 71 99.0 Highly correlated
6 ZNF8 70 99.0 Highly correlated
7 ZNF679 59 28.9 Weakly correlated
8 ZNF766 57 43.0 Weakly correlated
9 ZNF394 56 99.0 Highly correlated
10 ZNF558 55 99.0 Highly correlated
11 ZNF251 53 94.0 Moderately correlated
12 ZNF723 53 15.2 Weakly correlated
13 ZNF136 46 74.0 Weakly correlated
14 ZNF705B 46 28.9 Weakly correlated
15 ZNF263 38 180.0 Weakly correlated
16 ZNF160 37 74.0 Weakly correlated
17 ZNF354A 34 99.0 Highly correlated
18 ZNF2 33 99.0 Highly correlated
19 ZNF705D 33 28.9 Weakly correlated
20 ZNF490 28 43.0 Weakly correlated
21 ZNF92 28 28.9 Weakly correlated
22 ZNF479 25 6.4 Weakly correlated
23 ZNF84 25 99.0 Highly correlated
24 ZNF18 24 160.0 Weakly correlated
25 ZNF793 22 99.0 Highly correlated
26 ZNF534 21 19.6 Weakly correlated
27 ZFP37 20 99.0 Highly correlated
28 ZNF182 20 99.0 Highly correlated
29 ZNF486 20 8.6 Weakly correlated
30 ZNF589 19 28.9 Weakly correlated
31 ZFP57 18 87.0 Moderately correlated
32 ZNF133 18 99.0 Highly correlated
33 ZNF585A 18 99.0 Highly correlated
34 ZKSCAN1 16 160.0 Weakly correlated
35 ZFP69 15 99.0 Highly correlated
36 ZNF324 15 99.0 Highly correlated
37 ZNF101 14 43.0 Weakly correlated
38 ZNF554 14 99.0 Highly correlated
39 ZNF140 12 99.0 Highly correlated
40 ZNF735 12 28.9 Weakly correlated
41 ZNF879 12 99.0 Highly correlated
42 ZNF506 11 28.9 Weakly correlated
43 ZNF529 11 99.0 Highly correlated
44 ZNF274 10 99.0 Highly correlated
45 ZNF287 10 99.0 Highly correlated
46 ZNF610 10 28.9 Weakly correlated
47 ZFP69B 9 99.0 Highly correlated
48 ZNF175 9 94.0 Moderately correlated
49 ZNF597 9 94.0 Moderately correlated
50 ZFP90 8 99.0 Highly correlated
51 ZKSCAN8 8 160.0 Weakly correlated
52 ZNF202 8 160.0 Weakly correlated
53 ZNF75D 8 94.0 Moderately correlated
54 ZNF197 7 99.0 Highly correlated
55 ZNF485 7 94.0 Moderately correlated
56 ZNF682 7 28.9 Weakly correlated
57 ZNF81 7 99.0 Highly correlated
58 ZFP28 6 99.0 Highly correlated
59 ZNF257 6 0.0 Weakly correlated
60 ZNF284 6 43.0 Weakly correlated
61 ZNF28 6 28.9 Weakly correlated
62 ZNF350 6 99.0 Highly correlated
63 ZNF429 6 28.9 Weakly correlated
64 ZNF441 6 43.0 Weakly correlated
65 ZNF549 6 87.0 Moderately correlated
66 ZNF584 6 99.0 Highly correlated
67 ZNF585B 6 99.0 Highly correlated
68 ZNF823 6 43.0 Weakly correlated
69 ZKSCAN5 5 160.0 Weakly correlated
70 ZNF282 5 319.0 Weakly correlated
71 ZNF44 5 43.0 Weakly correlated
72 ZNF528 5 43.0 Weakly correlated
73 ZNF671 5 94.0 Moderately correlated
74 ZNF701 5 28.9 Weakly correlated
75 ZNF707 5 74.0 Weakly correlated
76 ZNF808 5 19.6 Weakly correlated
77 ZNF141 4 43.0 Weakly correlated
78 ZNF440 4 28.9 Weakly correlated
79 ZNF563 4 28.9 Weakly correlated
80 ZFP30 3 99.0 Highly correlated
81 ZNF169 3 94.0 Moderately correlated
82 ZNF264 3 99.0 Highly correlated
83 ZNF320 3 28.9 Weakly correlated
84 ZNF347 3 43.0 Weakly correlated
85 ZNF43 3 43.0 Weakly correlated
86 ZNF519 3 19.6 Weakly correlated
87 ZNF613 3 99.0 Highly correlated
88 ZNF641 3 99.0 Highly correlated
89 ZNF778 3 74.0 Weakly correlated
90 ZNF792 3 94.0 Moderately correlated
91 ZNF878 3 43.0 Weakly correlated
92 ZNF93 3 8.6 Weakly correlated
93 ZNF124 2 43.0 Weakly correlated
94 ZNF17 2 69.0 Weakly correlated
95 ZNF26 2 99.0 Highly correlated
96 ZNF334 2 99.0 Highly correlated
97 ZNF343 2 74.0 Weakly correlated
98 ZNF41 2 99.0 Highly correlated
99 ZNF445 2 99.0 Highly correlated
100 ZNF468 2 28.9 Weakly correlated
101 ZNF471 2 94.0 Moderately correlated
102 ZNF567 2 99.0 Highly correlated
103 ZNF677 2 99.0 Highly correlated
104 ZNF730 2 19.6 Weakly correlated
105 ZFP14 1 99.0 Highly correlated
106 ZNF10 1 99.0 Highly correlated
107 ZNF132 1 94.0 Moderately correlated
108 ZNF157 1 99.0 Highly correlated
109 ZNF19 1 99.0 Highly correlated
110 ZNF211 1 94.0 Moderately correlated
111 ZNF225 1 74.0 Weakly correlated
112 ZNF273 1 28.9 Weakly correlated
113 ZNF420 1 94.0 Moderately correlated
114 ZNF425 1 94.0 Moderately correlated
115 ZNF436 1 180.0 Weakly correlated
116 ZNF454 1 99.0 Highly correlated
117 ZNF559 1 74.0 Weakly correlated
118 ZNF561 1 43.0 Weakly correlated
119 ZNF570 1 99.0 Highly correlated
120 ZNF586 1 43.0 Weakly correlated
121 ZNF587 1 28.9 Weakly correlated
122 ZNF611 1 19.6 Weakly correlated
123 ZNF616 1 43.0 Weakly correlated
124 ZNF630 1 94.0 Moderately correlated
125 ZNF649 1 28.9 Weakly correlated
126 ZNF674 1 99.0 Highly correlated
127 ZNF675 1 8.6 Weakly correlated
128 ZNF684 1 99.0 Highly correlated
129 ZNF689 1 99.0 Highly correlated
130 ZNF695 1 28.9 Weakly correlated
131 ZNF736 1 43.0 Weakly correlated
132 ZNF777 1 319.0 Weakly correlated
133 ZNF786 1 99.0 Highly correlated
134 ZNF799 1 43.0 Weakly correlated
135 ZNF845 1 28.9 Weakly correlated
136 ZNF850 1 28.9 Weakly correlated
137 ZNF85 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 108 99.0 Highly correlated
2 ZIM3 64 87.0 Moderately correlated
3 ZNF8 60 99.0 Highly correlated
4 ZNF248 54 99.0 Highly correlated
5 ZNF136 42 74.0 Weakly correlated
6 ZNF723 35 15.2 Weakly correlated
7 ZNF160 35 74.0 Weakly correlated
8 ZNF317 34 99.0 Highly correlated
9 ZNF251 33 94.0 Moderately correlated
10 ZNF680 32 28.9 Weakly correlated
11 ZNF558 25 99.0 Highly correlated
12 ZNF354A 24 99.0 Highly correlated
13 ZNF84 23 99.0 Highly correlated
14 ZNF490 23 43.0 Weakly correlated
15 ZNF479 15 6.4 Weakly correlated
16 ZNF705B 13 28.9 Weakly correlated
17 ZNF92 13 28.9 Weakly correlated
18 ZNF534 13 19.6 Weakly correlated
19 ZNF585A 12 99.0 Highly correlated
20 ZNF133 12 99.0 Highly correlated
21 ZNF263 11 180.0 Weakly correlated
22 ZFP69 10 99.0 Highly correlated
23 ZNF705D 10 28.9 Weakly correlated
24 ZNF735 9 28.9 Weakly correlated
25 ZFP90 8 99.0 Highly correlated
26 ZNF879 8 99.0 Highly correlated
27 ZNF793 7 99.0 Highly correlated
28 ZNF81 7 99.0 Highly correlated
29 ZNF101 7 43.0 Weakly correlated
30 ZNF766 7 43.0 Weakly correlated
31 ZNF485 5 94.0 Moderately correlated
32 ZNF140 5 99.0 Highly correlated
33 ZNF823 5 43.0 Weakly correlated
34 ZNF486 5 8.6 Weakly correlated
35 ZNF554 5 99.0 Highly correlated
36 ZNF287 4 99.0 Highly correlated
37 ZNF44 4 43.0 Weakly correlated
38 ZNF324 4 99.0 Highly correlated
39 ZNF202 4 160.0 Weakly correlated
40 ZNF75D 4 94.0 Moderately correlated
41 ZFP57 4 87.0 Moderately correlated
42 ZNF350 4 99.0 Highly correlated
43 ZNF589 3 28.9 Weakly correlated
44 ZFP28 3 99.0 Highly correlated
45 ZNF671 3 94.0 Moderately correlated
46 ZNF347 3 43.0 Weakly correlated
47 ZNF197 3 99.0 Highly correlated
48 ZNF282 3 319.0 Weakly correlated
49 ZNF707 2 74.0 Weakly correlated
50 ZNF18 2 160.0 Weakly correlated
51 ZKSCAN5 2 160.0 Weakly correlated
52 ZNF468 2 28.9 Weakly correlated
53 ZNF26 2 99.0 Highly correlated
54 ZNF584 2 99.0 Highly correlated
55 ZNF792 2 94.0 Moderately correlated
56 ZNF506 2 28.9 Weakly correlated
57 ZNF429 2 28.9 Weakly correlated
58 ZNF175 2 94.0 Moderately correlated
59 ZNF701 2 28.9 Weakly correlated
60 ZNF28 2 28.9 Weakly correlated
61 ZNF679 2 28.9 Weakly correlated
62 ZNF141 2 43.0 Weakly correlated
63 ZNF778 2 74.0 Weakly correlated
64 ZNF549 2 87.0 Moderately correlated
65 ZNF610 2 28.9 Weakly correlated
66 ZNF264 2 99.0 Highly correlated
67 ZNF440 2 28.9 Weakly correlated
68 ZNF10 1 99.0 Highly correlated
69 ZNF43 1 43.0 Weakly correlated
70 ZNF471 1 94.0 Moderately correlated
71 ZNF563 1 28.9 Weakly correlated
72 ZNF597 1 94.0 Moderately correlated
73 ZNF675 1 8.6 Weakly correlated
74 ZNF677 1 99.0 Highly correlated
75 ZNF684 1 99.0 Highly correlated
76 ZKSCAN1 1 160.0 Weakly correlated
77 ZFP14 1 99.0 Highly correlated
78 ZNF777 1 319.0 Weakly correlated
79 ZNF343 1 74.0 Weakly correlated
80 ZNF320 1 28.9 Weakly correlated
81 ZNF567 1 99.0 Highly correlated
82 ZNF587 1 28.9 Weakly correlated
83 ZNF334 1 99.0 Highly correlated
84 ZNF2 1 99.0 Highly correlated
85 ZNF585B 1 99.0 Highly correlated
86 ZNF528 1 43.0 Weakly correlated
87 ZNF257 1 0.0 Weakly correlated
88 ZNF529 1 99.0 Highly correlated
89 ZNF641 1 99.0 Highly correlated
90 ZNF394 1 99.0 Highly correlated
91 ZNF284 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF248 99.0 Highly correlated
3 ZNF251 94.0 Moderately correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF317 99.0 Highly correlated
6 ZNF382 99.0 Highly correlated
7 ZNF680 28.9 Weakly correlated
8 ZNF766 43.0 Weakly correlated
9 ZNF793 99.0 Highly correlated
10 ZNF84 99.0 Highly correlated
11 ZNF92 28.9 Weakly correlated