ZRdb KZFP & Repeats
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LINE_L1MC_ORF2

  • Name
    L1MC_ORF2
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000285
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
atggtagatattaatccaactatatcaataatcactttaaatgtnaatggtctaaatacaccaattaaaagacagagattgtcagagtggatcaaaaaacaagacccaactatatgttgtctacaagaaacccactttaaatataaagacacatatagattaaaagtaaanggatggagaaagatataccatgctaacactaatcaaaagaaagcnggagtagctatattaatttcagacagagcagacttcagagcaaggaaagttatcagggataaagaggggcattacataatgataaaggggtcaattctccaagaagacataacaatccttaacgtgtatgcgcctaacaacagagcgtcaaaatacgtgaggcaaaaactgatagaactgcaaggagaaatagacgaatccactattatagttggagacttcaacacccctctatcagnaatngacagatccagcaggcagaaaatcagtaaggacatagttgaactnaacagcaccatcaatcaactggatntaattgacatctatagantacttcatccaacaacagcagaatacacattcttctcaagctcacatggaacattcaccaagatagaccacattctgggccataaaacacaccttaacaaatttaaaagaatagaaatcatacaangtntgctctcagaccacaatggaattaaactagaaatcaataacagaaagatagctggaaaatcccaaaatacttggagattaaacaacacacttctaaataacacatgggtcaaagaagaaatctcaagagaaatttaaaaatattttgaactaaatgaaaatgaaaatacaacttatcaaaatttgtgggatgcagcgaaagcagtgcttagagggaaatttatagcattgaatgcatatattagaaaagaagaaagatctaaaatcaataatctaagcttccaccttaggaaactagaaaaagaagagcaaattaaatccaaagtaagcagaagaaaagaaataataaaaattagagcagaaatcaatgaaattgaaaacaggaaatcaatagagaaaatcaacgaaaccaaaagctggttctttgaaaagatcaataaaattgataagcctctagccaggctaactaagaaaaaaagagagaagacacaaattactaatatcagaaatgaaagaggggacatcactacngatcccatggacattaaaaggataataaaggaatactatgaacaactctatgcccacaaatttgataacctagatgaaatggaccaattccttgaaagacacaatctgccaaaactcacacaagaagaaatagacaatctgaataggcctatatctattaaagaaattgaatcaataattaataaccttccaaaacagaaagcaccaggcccagatgggttcactggtgaattctaccaaacatttaaggaagaaattataccaattctctacaatctcttccagaagatagaagcagagggaatacttcctaactcattctatgaggccagcattaccctaataccaaaaccagacaaagacattacaagaaaagaaaactacagaccaatatctctcatgaacatagatgcaaaaatcctcaacaaaatattagcaaatcgaatccaacaatgtataaaaagaattatacaccacgaccaagtgggatttatcccaggtatgcaaggctggttcaacattcgaaaatcaattaatgtaatccatcacatcaacaggctaaagaagaaaaatcacatgatcatatcaatagatgcagaaaaagcatttgacaaaatccaacacccattcatgataaaaactctcagcaaactaggaatagaggggaacttcctcaacttgataaagaacatctacaaaaaacctacagctaacatcatacttaatggtgagaaactngaagctttcccgctaagatcaggaacaaggcaaggatgtcccctctcaccactccttttcaacatcgtactggaagtcctagctaatgcaataagacaagaaaaggaaataaaaggtatacagattgggaaggaagaaataaaactgtctttgttcgcagatgacatgattgtctatgtagaaaatccgaaagaatcgacaaaaaaactcctggaactaataagcgattatagcaaggttgcaggatacaaggttaatatacaaaagtcaatcgctttcctatataccagcaatgaacaantggaatttgaaattaaaaacacaataccatttacattagcacccccaaaaatgaaatacttaggtataaatctaacaaaatatgtacaagatctatatgaggaaaactacaaaactctgatgaaagaaatcaaagaaganctaaataaatggagagatattccatgttcatggataggaagactcaatattgtcaagatgtcagttcttcccaacttgatctatagattcaatgcaatcccaatcaaaatcccagcaagttattttgtggatatcgacaaactgattctaaagtttatatggagaggcaaaagacccagaatagccaacacaatattgaaggagaagaacaaagtcggaggactgacactacccgacttcaagacttactataaagctacagtaatcaagacagtgtggtattggcgaaagaatagacaaatagatcaatggaacagaatagagagcccagaaatagacccacataaatatagtcaactgatctttgacaaaggagcaaaggcaatncaatggagaaaagatagtcttttcaacaaatggtgctggaacaactggacatccacatgcaaaaaaatgaatctagacacagaccttacacccttcacaaaaattaactcaaaatggatcatagacctaaatgtaaaacgcaaaactataaaactcctagaagataacataggagaaaatctagatgaccttgggtttggcgatgactttttagatacaacaccaaaggcacgatccatgaaagaaanaattgataagctggacttcattaaaattaaaaacttctgctctgcgaaagacactgtcaagagaatgaaaagacaagccacagactgggagaaaatatttgcaaaagacatatctgataaaggactgttatccaaaatatacaaagaactcttaaaactcaacaataagaaaacaaacaacccgattnaaaaatgggcaaaagacctgaacagacacctcaccaaagaagatatacagatggcaaataagcatatgaaaagatgctcnacatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 631 99.0 Highly correlated
2 ZNF248 85 99.0 Highly correlated
3 ZNF394 78 99.0 Highly correlated
4 ZFP28 64 99.0 Highly correlated
5 ZIM3 60 87.0 Moderately correlated
6 ZNF680 54 28.9 Weakly correlated
7 ZNF766 49 43.0 Weakly correlated
8 ZNF18 45 160.0 Weakly correlated
9 ZNF317 41 99.0 Highly correlated
10 ZNF679 38 28.9 Weakly correlated
11 ZFP37 35 99.0 Highly correlated
12 ZNF2 31 99.0 Highly correlated
13 ZFP69 25 99.0 Highly correlated
14 ZNF101 25 43.0 Weakly correlated
15 ZNF263 25 180.0 Weakly correlated
16 ZNF723 24 15.2 Weakly correlated
17 ZNF92 24 28.9 Weakly correlated
18 ZNF705B 21 28.9 Weakly correlated
19 ZNF324 20 99.0 Highly correlated
20 ZFP69B 19 99.0 Highly correlated
21 ZNF251 19 94.0 Moderately correlated
22 ZNF589 19 28.9 Weakly correlated
23 ZNF454 18 99.0 Highly correlated
24 ZNF558 18 99.0 Highly correlated
25 ZNF705D 17 28.9 Weakly correlated
26 ZNF84 16 99.0 Highly correlated
27 ZNF175 14 94.0 Moderately correlated
28 ZNF182 13 99.0 Highly correlated
29 ZNF490 13 43.0 Weakly correlated
30 ZNF534 13 19.6 Weakly correlated
31 ZNF486 11 8.6 Weakly correlated
32 ZNF610 11 28.9 Weakly correlated
33 ZNF197 10 99.0 Highly correlated
34 ZNF479 10 6.4 Weakly correlated
35 ZNF547 10 74.0 Weakly correlated
36 ZKSCAN8 9 160.0 Weakly correlated
37 ZNF554 9 99.0 Highly correlated
38 ZNF584 9 99.0 Highly correlated
39 ZNF75D 9 94.0 Moderately correlated
40 ZKSCAN1 8 160.0 Weakly correlated
41 ZFP90 7 99.0 Highly correlated
42 ZNF257 7 0.0 Weakly correlated
43 ZNF485 7 94.0 Moderately correlated
44 ZNF528 7 43.0 Weakly correlated
45 ZNF567 7 99.0 Highly correlated
46 ZNF597 7 94.0 Moderately correlated
47 ZNF793 7 99.0 Highly correlated
48 ZNF140 6 99.0 Highly correlated
49 ZNF202 6 160.0 Weakly correlated
50 ZNF320 6 28.9 Weakly correlated
51 ZNF585B 6 99.0 Highly correlated
52 ZNF133 5 99.0 Highly correlated
53 ZNF287 5 99.0 Highly correlated
54 ZNF30 5 94.0 Moderately correlated
55 ZNF506 5 28.9 Weakly correlated
56 ZNF879 5 99.0 Highly correlated
57 ZNF274 4 99.0 Highly correlated
58 ZNF284 4 43.0 Weakly correlated
59 ZNF441 4 43.0 Weakly correlated
60 ZNF519 4 19.6 Weakly correlated
61 ZNF549 4 87.0 Moderately correlated
62 ZNF730 4 19.6 Weakly correlated
63 ZNF8 4 99.0 Highly correlated
64 ZFP14 3 99.0 Highly correlated
65 ZIK1 3 87.0 Moderately correlated
66 ZNF141 3 43.0 Weakly correlated
67 ZNF211 3 94.0 Moderately correlated
68 ZNF264 3 99.0 Highly correlated
69 ZNF26 3 99.0 Highly correlated
70 ZNF44 3 43.0 Weakly correlated
71 ZNF585A 3 99.0 Highly correlated
72 ZNF671 3 94.0 Moderately correlated
73 ZNF701 3 28.9 Weakly correlated
74 ZNF808 3 19.6 Weakly correlated
75 ZFP57 2 87.0 Moderately correlated
76 ZKSCAN5 2 160.0 Weakly correlated
77 ZNF10 2 99.0 Highly correlated
78 ZNF136 2 74.0 Weakly correlated
79 ZNF334 2 99.0 Highly correlated
80 ZNF354A 2 99.0 Highly correlated
81 ZNF468 2 28.9 Weakly correlated
82 ZNF471 2 94.0 Moderately correlated
83 ZNF583 2 99.0 Highly correlated
84 ZNF605 2 99.0 Highly correlated
85 ZNF614 2 99.0 Highly correlated
86 ZNF641 2 99.0 Highly correlated
87 ZNF677 2 99.0 Highly correlated
88 ZNF695 2 28.9 Weakly correlated
89 ZNF716 2 19.6 Weakly correlated
90 ZNF727 2 19.6 Weakly correlated
91 ZNF786 2 99.0 Highly correlated
92 ZNF7 2 99.0 Highly correlated
93 ZNF81 2 99.0 Highly correlated
94 ZNF823 2 43.0 Weakly correlated
95 ZNF91 2 6.0 Weakly correlated
96 PRDM9 1 0.0 Weakly correlated
97 ZFP30 1 99.0 Highly correlated
98 ZNF124 1 43.0 Weakly correlated
99 ZNF12 1 99.0 Highly correlated
100 ZNF135 1 94.0 Moderately correlated
101 ZNF157 1 99.0 Highly correlated
102 ZNF160 1 74.0 Weakly correlated
103 ZNF169 1 94.0 Moderately correlated
104 ZNF17 1 69.0 Weakly correlated
105 ZNF230 1 28.9 Weakly correlated
106 ZNF250 1 99.0 Highly correlated
107 ZNF267 1 43.0 Weakly correlated
108 ZNF273 1 28.9 Weakly correlated
109 ZNF347 1 43.0 Weakly correlated
110 ZNF354C 1 99.0 Highly correlated
111 ZNF41 1 99.0 Highly correlated
112 ZNF429 1 28.9 Weakly correlated
113 ZNF43 1 43.0 Weakly correlated
114 ZNF445 1 99.0 Highly correlated
115 ZNF470 1 99.0 Highly correlated
116 ZNF510 1 99.0 Highly correlated
117 ZNF550 1 94.0 Moderately correlated
118 ZNF560 1 43.0 Weakly correlated
119 ZNF573 1 94.0 Moderately correlated
120 ZNF607 1 43.0 Weakly correlated
121 ZNF627 1 74.0 Weakly correlated
122 ZNF630 1 94.0 Moderately correlated
123 ZNF669 1 43.0 Weakly correlated
124 ZNF674 1 99.0 Highly correlated
125 ZNF682 1 28.9 Weakly correlated
126 ZNF689 1 99.0 Highly correlated
127 ZNF707 1 74.0 Weakly correlated
128 ZNF735 1 28.9 Weakly correlated
129 ZNF736 1 43.0 Weakly correlated
130 ZNF749 1 28.9 Weakly correlated
131 ZNF777 1 319.0 Weakly correlated
132 ZNF778 1 74.0 Weakly correlated
133 ZNF816 1 28.9 Weakly correlated
134 ZNF845 1 28.9 Weakly correlated
135 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 97 99.0 Highly correlated
2 ZNF248 72 99.0 Highly correlated
3 ZIM3 36 87.0 Moderately correlated
4 ZFP28 28 99.0 Highly correlated
5 ZFP69 25 99.0 Highly correlated
6 ZNF101 17 43.0 Weakly correlated
7 ZNF84 16 99.0 Highly correlated
8 ZNF723 14 15.2 Weakly correlated
9 ZNF680 14 28.9 Weakly correlated
10 ZNF92 13 28.9 Weakly correlated
11 ZNF317 7 99.0 Highly correlated
12 ZNF766 6 43.0 Weakly correlated
13 ZNF140 6 99.0 Highly correlated
14 ZFP90 6 99.0 Highly correlated
15 ZNF534 5 19.6 Weakly correlated
16 ZNF490 5 43.0 Weakly correlated
17 ZNF324 4 99.0 Highly correlated
18 ZNF485 4 94.0 Moderately correlated
19 ZNF75D 4 94.0 Moderately correlated
20 ZFP14 3 99.0 Highly correlated
21 ZNF879 3 99.0 Highly correlated
22 ZNF454 3 99.0 Highly correlated
23 ZNF394 3 99.0 Highly correlated
24 ZNF479 3 6.4 Weakly correlated
25 ZNF486 3 8.6 Weakly correlated
26 ZNF44 3 43.0 Weakly correlated
27 ZIK1 2 87.0 Moderately correlated
28 ZNF567 2 99.0 Highly correlated
29 ZNF589 2 28.9 Weakly correlated
30 ZNF287 2 99.0 Highly correlated
31 ZNF263 2 180.0 Weakly correlated
32 ZNF8 2 99.0 Highly correlated
33 ZNF18 2 160.0 Weakly correlated
34 ZNF175 2 94.0 Moderately correlated
35 ZNF251 2 94.0 Moderately correlated
36 ZNF10 2 99.0 Highly correlated
37 ZNF81 2 99.0 Highly correlated
38 ZNF468 2 28.9 Weakly correlated
39 ZNF197 1 99.0 Highly correlated
40 ZNF202 1 160.0 Weakly correlated
41 ZNF141 1 43.0 Weakly correlated
42 ZNF169 1 94.0 Moderately correlated
43 PRDM9 1 0.0 Weakly correlated
44 ZKSCAN5 1 160.0 Weakly correlated
45 ZNF250 1 99.0 Highly correlated
46 ZNF584 1 99.0 Highly correlated
47 ZNF605 1 99.0 Highly correlated
48 ZNF641 1 99.0 Highly correlated
49 ZFP57 1 87.0 Moderately correlated
50 ZNF677 1 99.0 Highly correlated
51 ZNF705B 1 28.9 Weakly correlated
52 ZNF679 1 28.9 Weakly correlated
53 ZNF133 1 99.0 Highly correlated
54 ZNF182 1 99.0 Highly correlated
55 ZNF506 1 28.9 Weakly correlated
56 ZNF597 1 94.0 Moderately correlated
57 ZNF695 1 28.9 Weakly correlated
58 ZNF26 1 99.0 Highly correlated
59 ZNF549 1 87.0 Moderately correlated
60 ZNF705D 1 28.9 Weakly correlated
61 ZNF716 1 19.6 Weakly correlated
62 ZNF7 1 99.0 Highly correlated
63 ZNF2 1 99.0 Highly correlated
64 ZNF354A 1 99.0 Highly correlated
65 ZNF610 1 28.9 Weakly correlated
66 ZNF630 1 94.0 Moderately correlated
67 ZNF671 1 94.0 Moderately correlated
68 ZNF211 1 94.0 Moderately correlated
69 ZNF41 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Highly correlated
2 ZFP90 99.0 Highly correlated
3 ZNF248 99.0 Highly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF382 99.0 Highly correlated
6 ZNF680 28.9 Weakly correlated
7 ZNF723 15.2 Weakly correlated
8 ZNF84 99.0 Highly correlated
9 ZNF92 28.9 Weakly correlated