ZRdb KZFP & Repeats
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LINE_L1MCC_5END

  • Name
    L1MCC_5END
  • Repbase
    L1MCC_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000284
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aggaacttccactttcagttccgcttccgcttaggatgtagaaagccgcaagagaacgtcgctcccaccctaacaacgagaaaaaaagccggataatctacaaaatcatacttttcttgagcccatcagagagctgaggtcgcaaggcaaccaagtaaactgaattccaaagagngacaagcccctccaaggagagacgggacacacgaactgtttcacctttggcagagcacgggaggaagaggtggccgccatanaagcgggtaagaagaaatcagctaaaattttaacgaattnttaaaggccgagtgtgggctagcgtgacagtttagaannctgggagccccagacacaaggggagttcgcactcactcgcaagctcttttccacgggcctccaccgggtgctcacgagaaagactgggggcagggcaggagaccggagaaagccctcctcggtggcgcaggcgtgcaggaggtgatcggctgccgctgggggacaggcacgaagcccncctcacnttcccaganccttctctcctaaagcaaaagccttaagccgctggggngaggggcagcaaaccctntcgcccccagggccnaggcaaagacactntngcttctngggaagaggtaggagcnaaaccntctgnttctgggggaagagtagaagcaaaagccntctgcccctggggaagggcaggaaacnntcttgggcccaggatcctgcaccgatacaaagcagaggtctgctaccgctgggagagggacaggtcccatcccaaccacagatacaaggagagtttggctgccatggagagaggggcaggaacgctgagaaagccccacccccgaggcccaggnacacagggcctgcctaagactgaggctggaccaggacaacagagaacgtccctnctcccaccacnagcctaacaagcaccgagtaacanagcaacagcagtctaccgctgggggaggggcaagagcatggagagagaccccctctgnggcgcaggcgcgcaggganngccgaaagctgagggtggagcaggaacactgagaaaaaccctccggcaanccagcccccacnctaagcacaaggtaacagcagcccaccgctagaggaatttgaagcctgtggtgcactgaaggtaaccatagcaacaacaaaacccaaacccagctcaactcctgactagattgactcaacccccacactaanggcctagcagaagaaaaggcatgcccatttccaggcataaatactatttacctcagtctctactgttcttctacacanaatgtccggcattcaataaaaaattacgagacacacaaaaaaagnaagaaaaaacaacccattgtcaagagacaaagcaatcaacagaaccagactcaganatgacncagatgttggaactatcagacagggaatttaaaataactatgattaatatgttaaaggntctagtggaaaaanggtggacaacatgcangaacagatgggnaatttcagcagagagatggaaactat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 195 99.0 Highly correlated
2 ZNF317 112 99.0 Highly correlated
3 ZIM3 96 87.0 Moderately correlated
4 ZNF567 82 99.0 Highly correlated
5 ZNF558 78 99.0 Highly correlated
6 ZNF680 58 28.9 Weakly correlated
7 ZNF766 55 43.0 Weakly correlated
8 ZNF26 42 99.0 Highly correlated
9 ZNF263 39 180.0 Weakly correlated
10 ZNF793 39 99.0 Highly correlated
11 ZNF133 34 99.0 Highly correlated
12 ZNF534 29 19.6 Weakly correlated
13 ZNF394 24 99.0 Highly correlated
14 ZFP37 22 99.0 Highly correlated
15 ZNF2 22 99.0 Highly correlated
16 ZKSCAN1 21 160.0 Weakly correlated
17 ZNF175 20 94.0 Moderately correlated
18 ZNF589 18 28.9 Weakly correlated
19 ZNF679 18 28.9 Weakly correlated
20 ZNF92 18 28.9 Weakly correlated
21 ZNF705B 17 28.9 Weakly correlated
22 ZNF136 15 74.0 Weakly correlated
23 ZNF584 15 99.0 Highly correlated
24 ZFP28 14 99.0 Highly correlated
25 ZNF197 14 99.0 Highly correlated
26 ZNF610 14 28.9 Weakly correlated
27 ZNF723 14 15.2 Weakly correlated
28 ZFP69B 12 99.0 Highly correlated
29 ZNF18 12 160.0 Weakly correlated
30 ZNF490 12 43.0 Weakly correlated
31 ZKSCAN8 10 160.0 Weakly correlated
32 ZNF160 9 74.0 Weakly correlated
33 ZNF257 9 0.0 Weakly correlated
34 ZNF705D 9 28.9 Weakly correlated
35 ZNF707 9 74.0 Weakly correlated
36 ZNF101 8 43.0 Weakly correlated
37 ZNF182 8 99.0 Highly correlated
38 ZNF251 8 94.0 Moderately correlated
39 ZNF479 8 6.4 Weakly correlated
40 ZNF554 8 99.0 Highly correlated
41 ZNF701 8 28.9 Weakly correlated
42 ZNF75D 8 94.0 Moderately correlated
43 ZNF140 7 99.0 Highly correlated
44 ZFP57 6 87.0 Moderately correlated
45 ZNF141 6 43.0 Weakly correlated
46 ZNF28 6 28.9 Weakly correlated
47 ZNF324 6 99.0 Highly correlated
48 ZNF597 6 94.0 Moderately correlated
49 ZNF354A 5 99.0 Highly correlated
50 ZNF486 5 8.6 Weakly correlated
51 ZNF528 5 43.0 Weakly correlated
52 ZNF585B 5 99.0 Highly correlated
53 ZNF695 5 28.9 Weakly correlated
54 ZKSCAN5 4 160.0 Weakly correlated
55 ZNF264 4 99.0 Highly correlated
56 ZNF274 4 99.0 Highly correlated
57 ZNF287 4 99.0 Highly correlated
58 ZNF320 4 28.9 Weakly correlated
59 ZNF334 4 99.0 Highly correlated
60 ZNF485 4 94.0 Moderately correlated
61 ZNF506 4 28.9 Weakly correlated
62 ZFP30 3 99.0 Highly correlated
63 ZFP90 3 99.0 Highly correlated
64 ZNF248 3 99.0 Highly correlated
65 ZNF273 3 28.9 Weakly correlated
66 ZNF33A 3 99.0 Highly correlated
67 ZNF471 3 94.0 Moderately correlated
68 ZNF585A 3 99.0 Highly correlated
69 ZNF677 3 99.0 Highly correlated
70 ZNF114 2 28.9 Weakly correlated
71 ZNF132 2 94.0 Moderately correlated
72 ZNF169 2 94.0 Moderately correlated
73 ZNF202 2 160.0 Weakly correlated
74 ZNF282 2 319.0 Weakly correlated
75 ZNF30 2 94.0 Moderately correlated
76 ZNF41 2 99.0 Highly correlated
77 ZNF425 2 94.0 Moderately correlated
78 ZNF441 2 43.0 Weakly correlated
79 ZNF468 2 28.9 Weakly correlated
80 ZNF547 2 74.0 Weakly correlated
81 ZNF563 2 28.9 Weakly correlated
82 ZNF630 2 94.0 Moderately correlated
83 ZNF641 2 99.0 Highly correlated
84 ZNF730 2 19.6 Weakly correlated
85 ZNF792 2 94.0 Moderately correlated
86 PRDM9 1 0.0 Weakly correlated
87 ZFP82 1 99.0 Highly correlated
88 ZIK1 1 87.0 Moderately correlated
89 ZNF135 1 94.0 Moderately correlated
90 ZNF189 1 99.0 Highly correlated
91 ZNF225 1 74.0 Weakly correlated
92 ZNF230 1 28.9 Weakly correlated
93 ZNF235 1 99.0 Highly correlated
94 ZNF250 1 99.0 Highly correlated
95 ZNF253 1 19.6 Weakly correlated
96 ZNF284 1 43.0 Weakly correlated
97 ZNF440 1 28.9 Weakly correlated
98 ZNF44 1 43.0 Weakly correlated
99 ZNF483 1 99.0 Highly correlated
100 ZNF549 1 87.0 Moderately correlated
101 ZNF557 1 15.2 Weakly correlated
102 ZNF583 1 99.0 Highly correlated
103 ZNF627 1 74.0 Weakly correlated
104 ZNF669 1 43.0 Weakly correlated
105 ZNF671 1 94.0 Moderately correlated
106 ZNF674 1 99.0 Highly correlated
107 ZNF716 1 19.6 Weakly correlated
108 ZNF735 1 28.9 Weakly correlated
109 ZNF75A 1 94.0 Moderately correlated
110 ZNF761 1 19.6 Weakly correlated
111 ZNF778 1 74.0 Weakly correlated
112 ZNF786 1 99.0 Highly correlated
113 ZNF791 1 87.0 Moderately correlated
114 ZNF823 1 43.0 Weakly correlated
115 ZNF84 1 99.0 Highly correlated
116 ZNF879 1 99.0 Highly correlated
117 ZNF8 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF567 71 99.0 Highly correlated
2 ZIM3 51 87.0 Moderately correlated
3 ZNF26 37 99.0 Highly correlated
4 ZNF558 32 99.0 Highly correlated
5 ZNF317 28 99.0 Highly correlated
6 ZNF133 26 99.0 Highly correlated
7 ZNF534 21 19.6 Weakly correlated
8 ZNF382 19 99.0 Highly correlated
9 ZNF793 17 99.0 Highly correlated
10 ZNF680 16 28.9 Weakly correlated
11 ZNF136 11 74.0 Weakly correlated
12 ZNF160 9 74.0 Weakly correlated
13 ZNF263 9 180.0 Weakly correlated
14 ZNF705B 5 28.9 Weakly correlated
15 ZNF766 5 43.0 Weakly correlated
16 ZNF101 4 43.0 Weakly correlated
17 ZNF75D 4 94.0 Moderately correlated
18 ZNF610 4 28.9 Weakly correlated
19 ZNF723 4 15.2 Weakly correlated
20 ZNF490 4 43.0 Weakly correlated
21 ZFP28 4 99.0 Highly correlated
22 ZNF677 4 99.0 Highly correlated
23 ZNF140 3 99.0 Highly correlated
24 ZNF354A 3 99.0 Highly correlated
25 ZFP90 3 99.0 Highly correlated
26 ZNF705D 3 28.9 Weakly correlated
27 ZKSCAN5 3 160.0 Weakly correlated
28 ZNF251 3 94.0 Moderately correlated
29 ZNF264 3 99.0 Highly correlated
30 ZNF468 2 28.9 Weakly correlated
31 ZNF585A 2 99.0 Highly correlated
32 ZNF248 2 99.0 Highly correlated
33 ZNF287 2 99.0 Highly correlated
34 ZNF485 2 94.0 Moderately correlated
35 ZNF589 2 28.9 Weakly correlated
36 ZNF528 2 43.0 Weakly correlated
37 ZNF679 2 28.9 Weakly correlated
38 ZNF479 2 6.4 Weakly correlated
39 ZNF2 2 99.0 Highly correlated
40 ZNF175 2 94.0 Moderately correlated
41 ZNF257 2 0.0 Weakly correlated
42 ZNF707 2 74.0 Weakly correlated
43 ZNF141 2 43.0 Weakly correlated
44 ZNF695 2 28.9 Weakly correlated
45 ZKSCAN1 2 160.0 Weakly correlated
46 ZNF169 1 94.0 Moderately correlated
47 ZNF282 1 319.0 Weakly correlated
48 ZNF28 1 28.9 Weakly correlated
49 ZNF641 1 99.0 Highly correlated
50 ZNF8 1 99.0 Highly correlated
51 ZNF132 1 94.0 Moderately correlated
52 ZNF549 1 87.0 Moderately correlated
53 ZIK1 1 87.0 Moderately correlated
54 ZFP82 1 99.0 Highly correlated
55 ZNF320 1 28.9 Weakly correlated
56 ZNF202 1 160.0 Weakly correlated
57 ZNF486 1 8.6 Weakly correlated
58 ZNF701 1 28.9 Weakly correlated
59 ZNF627 1 74.0 Weakly correlated
60 ZNF585B 1 99.0 Highly correlated
61 ZNF506 1 28.9 Weakly correlated
62 ZNF716 1 19.6 Weakly correlated
63 ZNF189 1 99.0 Highly correlated
64 ZNF18 1 160.0 Weakly correlated
65 ZNF471 1 94.0 Moderately correlated
66 ZNF584 1 99.0 Highly correlated
67 ZNF735 1 28.9 Weakly correlated
68 ZNF197 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF26 99.0 Highly correlated
3 ZNF567 99.0 Highly correlated
4 ZNF793 99.0 Highly correlated