ZRdb KZFP & Repeats
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LINE_L1MCB_5END

  • Name
    L1MCB_5END
  • Repbase
    L1MCB_5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000283
Description :

Identified in humans and rodents.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgacatgtaaagagcttggaagtcgtcactcccttcnacaacaagaaaaagctgaacaaactgaaaaatcaacgacttttcttggacccatcagagaactgaggtcgcagggcaaaccgccaccccgaaatctggagagacaggcgaatncagagaatcacagccgagatctgcttacctggagcagaagccgctggagncataaactggtaggaacacttaaatggtaattttgacgaattgctggaggctgagtgtggactagcntgagagtgagaaactcccgggggcccagtctaggggggcccccacactttcgtgggttttacctccaggaaccccaccaggttctcacggtgaagatccgagaaaaatcccctcgtggctctggcagggggaggggaaaagtaaccattntgaaatacgcccagagcgttctccataacaaagncctgccctncaggggaaaanactttaccagagccttatcccagcttnggggaagggnaattacccaactccagccccctctagccttcctgtctcacctaaggggagaaaaaaagctaagaaacacttgtgaaggtcacagcccagggacacaggcccactaaaagactgagatttaatcataagattatagaacgcttcccctcccccacaccttaccaccacatcaacagggctccagtataataacagtggattacagctgaaagagctgcaagacncagactctatttaagaaggagtncctagggaaacccaaagacaanaggggagacaaaaacaaggacactagaggaaantttagcctctggcacctacagctacagcaaacattaaacacagcccaactcctagccagatnaacataaaacctcacactaaaggcctatttacctcagttcctnttacccgatacatcatgtccggctttcaacaaaaaattacaaggcatgctaaaaggcaagaaaaaaaancacagtctgaagagacaaagcaagcatcagaaccagactcagatatgacanagatnttggaattatcagacngggaatttaaaataactatgattaatatgttaagggctctaatggaaaaagtagacaacatgcaagaacagatgggtaatgtaagcagagagatggaaactctaaganaagaatcaaaaggaaatgctagaaatnaaaacat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 52 99.0 Highly correlated
2 ZNF317 46 99.0 Highly correlated
3 ZIM3 34 87.0 Moderately correlated
4 ZNF558 29 99.0 Highly correlated
5 ZNF160 28 74.0 Weakly correlated
6 ZNF680 25 28.9 Weakly correlated
7 ZNF793 25 99.0 Highly correlated
8 ZNF679 22 28.9 Weakly correlated
9 ZNF133 17 99.0 Highly correlated
10 ZNF479 13 6.4 Weakly correlated
11 ZNF26 13 99.0 Highly correlated
12 ZNF705B 13 28.9 Weakly correlated
13 ZNF705D 13 28.9 Weakly correlated
14 ZNF582 13 99.0 Highly correlated
15 ZNF394 13 99.0 Highly correlated
16 ZNF136 11 74.0 Weakly correlated
17 ZNF92 11 28.9 Weakly correlated
18 ZNF506 10 28.9 Weakly correlated
19 ZNF597 10 94.0 Moderately correlated
20 ZNF766 9 43.0 Weakly correlated
21 ZNF567 9 99.0 Highly correlated
22 ZNF75D 8 94.0 Moderately correlated
23 ZNF723 7 15.2 Weakly correlated
24 ZNF101 7 43.0 Weakly correlated
25 ZNF585A 7 99.0 Highly correlated
26 ZNF486 7 8.6 Weakly correlated
27 ZNF248 7 99.0 Highly correlated
28 ZNF490 6 43.0 Weakly correlated
29 ZFP37 6 99.0 Highly correlated
30 ZNF251 6 94.0 Moderately correlated
31 ZNF182 6 99.0 Highly correlated
32 ZNF701 5 28.9 Weakly correlated
33 ZNF534 5 19.6 Weakly correlated
34 ZNF263 5 180.0 Weakly correlated
35 ZNF100 4 28.9 Weakly correlated
36 ZNF589 4 28.9 Weakly correlated
37 ZNF2 3 99.0 Highly correlated
38 ZNF707 3 74.0 Weakly correlated
39 ZNF202 3 160.0 Weakly correlated
40 ZNF736 3 43.0 Weakly correlated
41 ZNF610 3 28.9 Weakly correlated
42 ZKSCAN8 3 160.0 Weakly correlated
43 ZNF773 3 94.0 Moderately correlated
44 ZKSCAN1 3 160.0 Weakly correlated
45 ZNF8 3 99.0 Highly correlated
46 ZNF485 3 94.0 Moderately correlated
47 ZFP28 3 99.0 Highly correlated
48 ZNF510 2 99.0 Highly correlated
49 ZNF823 2 43.0 Weakly correlated
50 ZNF441 2 43.0 Weakly correlated
51 ZNF354A 2 99.0 Highly correlated
52 ZNF350 2 99.0 Highly correlated
53 ZNF33A 2 99.0 Highly correlated
54 ZNF257 2 0.0 Weakly correlated
55 ZNF274 2 99.0 Highly correlated
56 ZNF140 2 99.0 Highly correlated
57 ZNF114 2 28.9 Weakly correlated
58 ZNF28 2 28.9 Weakly correlated
59 ZNF786 1 99.0 Highly correlated
60 ZNF211 1 94.0 Moderately correlated
61 ZNF197 1 99.0 Highly correlated
62 ZNF18 1 160.0 Weakly correlated
63 ZNF175 1 94.0 Moderately correlated
64 ZNF735 1 28.9 Weakly correlated
65 ZNF169 1 94.0 Moderately correlated
66 ZKSCAN5 1 160.0 Weakly correlated
67 ZNF777 1 319.0 Weakly correlated
68 ZNF93 1 8.6 Weakly correlated
69 ZNF789 1 99.0 Highly correlated
70 ZFP82 1 99.0 Highly correlated
71 ZNF799 1 43.0 Weakly correlated
72 ZFP69 1 99.0 Highly correlated
73 ZNF845 1 28.9 Weakly correlated
74 ZFP69B 1 99.0 Highly correlated
75 ZNF91 1 6.0 Weakly correlated
76 ZFP57 1 87.0 Moderately correlated
77 ZNF440 1 28.9 Weakly correlated
78 ZNF585B 1 99.0 Highly correlated
79 ZNF425 1 94.0 Moderately correlated
80 ZNF347 1 43.0 Weakly correlated
81 ZNF519 1 19.6 Weakly correlated
82 ZNF525 1 19.6 Weakly correlated
83 ZNF334 1 99.0 Highly correlated
84 ZNF554 1 99.0 Highly correlated
85 ZNF555 1 94.0 Moderately correlated
86 ZNF331 1 94.0 Moderately correlated
87 ZNF324 1 99.0 Highly correlated
88 ZNF320 1 28.9 Weakly correlated
89 ZNF253 1 19.6 Weakly correlated
90 ZNF586 1 43.0 Weakly correlated
91 ZNF287 1 99.0 Highly correlated
92 ZNF284 1 43.0 Weakly correlated
93 ZNF607 1 43.0 Weakly correlated
94 ZNF282 1 319.0 Weakly correlated
95 ZNF665 1 28.9 Weakly correlated
96 ZNF677 1 99.0 Highly correlated
97 ZNF695 1 28.9 Weakly correlated
98 ZNF700 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 24 74.0 Weakly correlated
2 ZIM3 22 87.0 Moderately correlated
3 ZNF558 14 99.0 Highly correlated
4 ZNF793 13 99.0 Highly correlated
5 ZNF133 13 99.0 Highly correlated
6 ZNF26 11 99.0 Highly correlated
7 ZNF680 10 28.9 Weakly correlated
8 ZNF317 10 99.0 Highly correlated
9 ZNF567 9 99.0 Highly correlated
10 ZNF597 7 94.0 Moderately correlated
11 ZNF382 7 99.0 Highly correlated
12 ZNF101 6 43.0 Weakly correlated
13 ZNF136 6 74.0 Weakly correlated
14 ZNF479 5 6.4 Weakly correlated
15 ZNF723 5 15.2 Weakly correlated
16 ZNF585A 5 99.0 Highly correlated
17 ZNF248 4 99.0 Highly correlated
18 ZNF705B 4 28.9 Weakly correlated
19 ZNF766 3 43.0 Weakly correlated
20 ZNF534 3 19.6 Weakly correlated
21 ZNF75D 3 94.0 Moderately correlated
22 ZNF705D 3 28.9 Weakly correlated
23 ZNF506 3 28.9 Weakly correlated
24 ZNF257 2 0.0 Weakly correlated
25 ZFP28 2 99.0 Highly correlated
26 ZNF140 2 99.0 Highly correlated
27 ZNF100 2 28.9 Weakly correlated
28 ZNF202 2 160.0 Weakly correlated
29 ZNF28 1 28.9 Weakly correlated
30 ZNF695 1 28.9 Weakly correlated
31 ZNF175 1 94.0 Moderately correlated
32 ZNF169 1 94.0 Moderately correlated
33 ZNF789 1 99.0 Highly correlated
34 ZNF610 1 28.9 Weakly correlated
35 ZNF736 1 43.0 Weakly correlated
36 ZNF263 1 180.0 Weakly correlated
37 ZNF320 1 28.9 Weakly correlated
38 ZNF701 1 28.9 Weakly correlated
39 ZNF331 1 94.0 Moderately correlated
40 ZNF589 1 28.9 Weakly correlated
41 ZNF8 1 99.0 Highly correlated
42 ZFP37 1 99.0 Highly correlated
43 ZFP82 1 99.0 Highly correlated
44 ZKSCAN5 1 160.0 Weakly correlated
45 ZNF282 1 319.0 Weakly correlated
46 ZNF490 1 43.0 Weakly correlated
47 ZNF211 1 94.0 Moderately correlated
48 ZNF440 1 28.9 Weakly correlated
49 ZNF823 1 43.0 Weakly correlated
50 ZNF354A 1 99.0 Highly correlated
51 ZNF33A 1 99.0 Highly correlated
52 ZNF607 1 43.0 Weakly correlated
53 ZNF394 1 99.0 Highly correlated
54 ZNF485 1 94.0 Moderately correlated
55 ZNF585B 1 99.0 Highly correlated
56 ZNF677 1 99.0 Highly correlated
57 ZNF251 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF26 99.0 Highly correlated
3 ZNF317 99.0 Highly correlated
4 ZNF567 99.0 Highly correlated
5 ZNF597 94.0 Moderately correlated
6 ZNF680 28.9 Weakly correlated
7 ZNF793 99.0 Highly correlated